HHsearch results for GI: 254780636 and protein with PDBid: 1yt3_A
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=100.00 E-value=0 Score=307.87 Aligned_cols=188 Identities=24% Similarity=0.361 Sum_probs=167.5
Q ss_pred CCEEECCC--CCCHHH-HCCCCCCEEEECCCCCCCCCCCEEEEEEEEECCCCEEEECCCCCCCCCHHHHHHHHCCCCCEE
Q ss_conf 72153257--888578-424898279971777898544507999984189428997465778570677677732364023
Q gi|254780636|r 2 TTIRVHEG--DIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78 (207)
Q Consensus 2 ~~~~~~~~--dl~~~~-~l~~~~~iaiDtEt~~l~~~~~~l~LiQl~~~~~~~~l~~~~~~~~~~~~L~~ll~d~~i~KV 78 (207)
|||+++.. +|.+.+ .++.+++|||||||+++++|++++||||||++++ +|++++.... ....|+++|+|++|+||
T Consensus 1 m~y~~I~t~~~L~~~~~~l~~~~~ia~DtE~~~~~ty~~~l~LiQi~~~~~-~~liD~l~~~-~~~~L~~ll~~~~i~kv 78 (375)
T 1yt3_A 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEH-LALIDPLGIT-DWSPLKAILRDPSITKF 78 (375)
T ss_dssp CCCEEECSHHHHHHHHHHHTTSSEEEEEEEEECCSCSSCEEEEEEEECSSC-EEEECGGGCS-CCHHHHHHHHCTTSEEE
T ss_pred CCEEEECCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEEEEEEEECCE-EEEEECCCCC-CHHHHHHHHHCCCCEEE
T ss_conf 927998989999999999847990899798489888888789999876892-7999658987-78999999819886199
Q ss_pred ECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCCHHHHHHHHHHHH
Q ss_conf 01000016888654200000004578988652110000008877765420024675200365654432368999986459
Q gi|254780636|r 79 FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158 (207)
Q Consensus 79 ~Hn~~~D~~~L~~~~gi~~~~i~DT~ias~l~~~~~~~~~L~~L~~~~lg~~ldK~~q~SdW~~rpLs~~Qi~YAA~Dv~ 158 (207)
|||+++|+.+|.+++|+.+.|+||||+|+.+++ ++.++||+.+++++||++++|+.|+|||+.||||++|+.|||.||+
T Consensus 79 ~h~~~~D~~~L~~~~~~~~~~~fDt~ia~~~~~-~~~~~~l~~l~~~~l~~~l~K~~~~sdW~~rPLs~~ql~YAa~Dv~ 157 (375)
T 1yt3_A 79 LHAGSEDLEVFLNVFGELPQPLIDTQILAAFCG-RPMSWGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVW 157 (375)
T ss_dssp ESSCHHHHHHHHHHHSSCCSSEEEHHHHHHHTT-CCTTCCHHHHHHHHHCCCCCCTTTTSCTTSSSCCHHHHHHHHHHHH
T ss_pred EECHHHHHHHHHHHCCCCCCCEEECHHHHHHHC-CCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHCCCE
T ss_conf 725586799999964988887166388898838-7506788899999864503305545222566687899999840732
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999974918999999964006899
Q gi|254780636|r 159 HLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192 (207)
Q Consensus 159 ~l~~L~~~l~~~L~~~~~~~~~~~e~~~l~~~~~ 192 (207)
||++||+.|.++|.+.|+.+|+.+||+.+.....
T Consensus 158 ~l~~l~~~l~~~L~~~~~~~~~~ee~~~l~~~~~ 191 (375)
T 1yt3_A 158 YLLPITAKLMVETEASGWLPAALDECRLMQMRRQ 191 (375)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 3799999999877630004678999999874431