HHsearch results for GI: 254780636 and protein with PDBid: 2d5r_A
>2d5r_A CCR4-NOT transcription complex subunit 7; poly(A) deadenylase, antiproliferative protein, transcription; 2.50A {Homo sapiens} SCOP: c.55.3.9
Probab=97.58 E-value=0.00033 Score=42.41 Aligned_cols=141 Identities=17% Similarity=0.174 Sum_probs=84.9
Q ss_pred HCCCCCCEEEECCCCCCCCCC-------------------CEEEEEEEE----ECCC------CEEEECC--C--CCCCC
Q ss_conf 424898279971777898544-------------------507999984----1894------2899746--5--77857
Q gi|254780636|r 16 AARYVDAIAVDTETLGLMPRR-------------------DRLCIVQLS----PGDG------TVDIIRI--A--AGQKN 62 (207)
Q Consensus 16 ~l~~~~~iaiDtEt~~l~~~~-------------------~~l~LiQl~----~~~~------~~~l~~~--~--~~~~~ 62 (207)
..+..+.||+|||++|+.... +.+.+||++ ..++ .++-+.+ . .....
T Consensus 20 ~i~~~~fvAiDtEfpGl~~~~~~~~~~~~~~~Y~~lr~nv~~~~iiQlGlt~~~~~g~~~~~~~~w~FNf~f~~~~d~~~ 99 (252)
T 2d5r_A 20 VIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTEDMYA 99 (252)
T ss_dssp HHHHCCEEEEEEECCCCCCCCCSCCSSHHHHHHHHHHHHHTTCCCCEEEEEEECTTSCCCSSCCEEEEEBCCCTTTSCCC
T ss_pred HHHCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEEEEEECCCCCCCCCCEEEEEEEECCCCCCCC
T ss_conf 98649989998670684578876557998999999998775403037898986247877888612779987779766537
Q ss_pred CH-----------------------HHHHH------HHCCCCCEEECCCCHHHHHHHHHH-H-CCC--------------
Q ss_conf 06-----------------------77677------732364023010000168886542-0-000--------------
Q gi|254780636|r 63 AP-----------------------NLVGM------LVDEKREKIFHYGRFDIAVLFYTF-G-VRV-------------- 97 (207)
Q Consensus 63 ~~-----------------------~L~~l------l~d~~i~KV~Hn~~~D~~~L~~~~-g-i~~-------------- 97 (207)
+. .+.++ .-++++.||.|++-+|+..|.+.+ | -.|
T Consensus 100 ~~Si~fL~~~GfDF~k~~~~GI~~~~f~ell~~s~~~~~~~v~wv~f~g~yD~~~L~k~l~g~~LP~~~~~F~~~~~~~F 179 (252)
T 2d5r_A 100 QDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFF 179 (252)
T ss_dssp HHHHHHHHHHTCCHHHHHHHCBCHHHHHHHHHTTTSSSSSSCEEEESSCHHHHHHHHHHHHTSCCCSSHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHC
T ss_conf 78999999869977899980973899999888611432589737871345789999999809999977899999999977
Q ss_pred CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 00045789886521100000088777654200246752003656544323689999864599999999999999974
Q gi|254780636|r 98 RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 (207)
Q Consensus 98 ~~i~DT~ias~l~~~~~~~~~L~~L~~~~lg~~ldK~~q~SdW~~rpLs~~Qi~YAA~Dv~~l~~L~~~l~~~L~~~ 174 (207)
..++||...++-+.+ .+-||..+++. ||+. .. -+. +=|..|+..+..+|-++.+.+-..
T Consensus 180 p~~yD~K~i~~~~~~--~~~~L~~la~~-L~v~---r~---------g~~---H~AG~DSllT~~~F~~l~~~~~~~ 238 (252)
T 2d5r_A 180 PVIYDVKYLMKSCKN--LKGGLQEVAEQ-LELE---RI---------GPQ---HQAGSDSLLTGMAFFKMREMFFED 238 (252)
T ss_dssp SCEEEHHHHGGGCTT--CCSSHHHHHHH-HTCC---CC---------SST---TSHHHHHHHHHHHHHHHHHHTSCS
T ss_pred CHHEEHHHHHHHCCC--CCCHHHHHHHH-CCCC---CC---------CCC---CCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 346046989844566--57649999997-6999---87---------987---653678999999999999997147