HHsearch results for GI: 254780636 and protein with PDBid: 2gv9_A
>2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1 strain kos} PDB: 1dml_B*
Probab=96.73 E-value=0.0046 Score=35.82 Aligned_cols=97 Identities=10% Similarity=-0.026 Sum_probs=56.2
Q ss_pred HCCCCCEEECCC-CHHHHHHHHHHH----CCC------------------------------CC--HHHHHHHHHHHHHH
Q ss_conf 323640230100-001688865420----000------------------------------00--04578988652110
Q gi|254780636|r 71 VDEKREKIFHYG-RFDIAVLFYTFG----VRV------------------------------RP--VFCTKIASRLTRTY 113 (207)
Q Consensus 71 ~d~~i~KV~Hn~-~~D~~~L~~~~g----i~~------------------------------~~--i~DT~ias~l~~~~ 113 (207)
.||+|+ +|||+ .||+..|..... ..+ .+ ++|++-..+-- ..
T Consensus 415 ~dPDII-tGYNi~~FDlpYL~~Ra~~l~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~i~Gri~iDl~~~~k~~-~k 492 (1193)
T 2gv9_A 415 YGPEFV-TGYNIINFDWPFLLAKLTDIYKVPLDGYGRMNGRGVFRVWDIGQSHFQKRSKIKVNGMVNIDMYGIITDK-IK 492 (1193)
T ss_dssp HCCSEE-EESSTTTTHHHHHHHHHHHTTCCCCTTTSSBSSSCCEEECC----------CEEETTBEEEEHHHHHTTT-CC
T ss_pred CCCCEE-EEECCCCCCHHHHHHHHHHHCCCCHHHHCCCCCCCCCEECCCCCCCCCCCCEEEECCEEEEEHHHHHHHH-CC
T ss_conf 399889-9725547747899999999779987882755765662020356665565404623466998437887663-04
Q ss_pred CCCHHHHHHHHHHHCCCCCC-CC-EEC-CCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 00000887776542002467-52-003-6565443-236899998645999999999999
Q gi|254780636|r 114 TNQHGLKDNLKELLGINISK-AQ-QSS-DWSADDL-SDEQLQYAASDVVHLHALRLQFTE 169 (207)
Q Consensus 114 ~~~~~L~~L~~~~lg~~ldK-~~-q~S-dW~~rpL-s~~Qi~YAA~Dv~~l~~L~~~l~~ 169 (207)
..+++|.++++++||.+-.. +. ... -|...|- ...-..|+..|+..+..|+.++..
T Consensus 493 L~sY~L~~Va~~~Lg~~K~dv~~~~i~~~~~~~~~~~~~l~~Y~l~Da~lv~~L~~kl~~ 552 (1193)
T 2gv9_A 493 LSSYKLNAVAEAVLKDKKKDLSYRDIPAYYATGPAQRGVIGEYCIQDSLLVGQLFFKFLP 552 (1193)
T ss_dssp CSCCCHHHHHHHTSCCCCCCCCTTTHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred CCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 666889999999727777666888888887656778999999998879999999999878