HHsearch results for GI: 254780636 and protein with PDBid: 2kfn_A
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=99.97 E-value=2e-31 Score=200.64 Aligned_cols=199 Identities=20% Similarity=0.167 Sum_probs=156.8
Q ss_pred CEEECCC--CCCHHHH-CCCCCCEEEECCCCCCCCCCCEEEEEEEEECCCCEEEECCCCCCCC----------CHHHHHH
Q ss_conf 2153257--8885784-2489827997177789854450799998418942899746577857----------0677677
Q gi|254780636|r 3 TIRVHEG--DIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN----------APNLVGM 69 (207)
Q Consensus 3 ~~~~~~~--dl~~~~~-l~~~~~iaiDtEt~~l~~~~~~l~LiQl~~~~~~~~l~~~~~~~~~----------~~~L~~l 69 (207)
||+.+.+ +|...+. +...+.+||||||+|++++.+++++||+|..++.++++|+.+.... ...|+++
T Consensus 6 ~y~~i~~~~~l~~~~~~l~~~~~~a~D~ETt~ld~~~~~ivgis~s~~~~~~~yipi~h~~~~~~~~~~~~~vl~~Lk~~ 85 (605)
T 2kfn_A 6 NYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELLKPL 85 (605)
T ss_dssp SSEECCSHHHHHHHHHHHHTSSSEEEEEEESCSCTTTCCEEEEEEEEETTEEEEEECCCCSTTCCCCCCHHHHHHHHHHH
T ss_pred CCEEECCHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCEEEEEEEECCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 65288989999999999852994999831799983657499999982498599998226667775558999999999999
Q ss_pred HHCCCCCEEECCCCHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCC--
Q ss_conf 732364023010000168886542000000-04578988652110000008877765420024675200365654432--
Q gi|254780636|r 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLS-- 146 (207)
Q Consensus 70 l~d~~i~KV~Hn~~~D~~~L~~~~gi~~~~-i~DT~ias~l~~~~~~~~~L~~L~~~~lg~~ldK~~q~SdW~~rpLs-- 146 (207)
|+|+++.||+||++||+.+|.++ |+.+.+ ++|||+|+++++.....+++..+++++++..+++.....+|++..++
T Consensus 86 l~~~~i~kV~HNakFD~~~L~~~-Gi~l~~~~~DTmiaa~ll~~~~~~~~l~~~~~~~l~~~~~~~~~~~g~~k~~~~~~ 164 (605)
T 2kfn_A 86 LEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFN 164 (605)
T ss_dssp HTCTTSCEEESSHHHHHHHHHTT-TCCCCCEEEEHHHHHHHHCTTSSCCSHHHHHHHHSCCCCCCHHHHHCSSTTCCCGG
T ss_pred HHCCCCCEEEECHHHHHHHHHHC-CCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCHHHHHCCCCCCCCHH
T ss_conf 81899979997269999999977-99889840207778777256555565899999863877675898705774438801
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-HHHHH-HHHHHHHHHHHHHHCCCCCCCC
Q ss_conf ----368999986459999999999999997491-89999-9996400689998667988884
Q gi|254780636|r 147 ----DEQLQYAASDVVHLHALRLQFTEKLQRLGR-SDLAT-SCCNFLMDRAELDLLGWENVDI 203 (207)
Q Consensus 147 ----~~Qi~YAA~Dv~~l~~L~~~l~~~L~~~~~-~~~~~-~e~~~l~~~~~me~~g~~~~~~ 203 (207)
.....|++.|+..+..++..+...+.+... ..++. .|+++.+++++|+..|+. +|.
T Consensus 165 ~~~~~~~~~y~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~lE~pl~~vla~Me~~Gi~-vD~ 226 (605)
T 2kfn_A 165 QIALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVK-IDP 226 (605)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHTHHHHHHHHHHHHHHCBC-BCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH-HHH
T ss_conf 22377899999999999999999999999986899999999981738999988440176-529