HHsearch results for GI: 254780636 and protein with PDBid: 2p1j_A
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=99.05 E-value=3.1e-10 Score=77.45 Aligned_cols=142 Identities=20% Similarity=0.300 Sum_probs=87.5
Q ss_pred HHHCCCCCCEEEECCCCCCCCCCCEEEEEEEEE---CCCC----E-EEECCCCCCCC----------------------C
Q ss_conf 784248982799717778985445079999841---8942----8-99746577857----------------------0
Q gi|254780636|r 14 ECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP---GDGT----V-DIIRIAAGQKN----------------------A 63 (207)
Q Consensus 14 ~~~l~~~~~iaiDtEt~~l~~~~~~l~LiQl~~---~~~~----~-~l~~~~~~~~~----------------------~ 63 (207)
+--+.....|.+|+||||++|.++++ ||++. .++. + .++........ .
T Consensus 6 ~~~~~~~~yvviD~ETTGl~~~~~~I--ieig~v~~~~~~i~~~~~~~v~p~~~~~~~~~~i~gi~~~~~~~~~~~~~~~ 83 (186)
T 2p1j_A 6 DSTFGDATFVVLDFETTGLDPQVDEI--IEIGAVKIQGGQIVDEYHTLIKPSREISRKSSEITGITQEMLENKRSIEEVL 83 (186)
T ss_dssp -------CEEEEEEEESCSCTTTCCE--EEEEEEEEETTEEEEEEEEECBCSSCCCHHHHHHHCCCHHHHTTCCBHHHHH
T ss_pred CCCCCCCCEEEEEEECCCCCCCCCEE--EEEEEEEEECCEEEEEEEEEECCCCCCCHHHHHHCCCCHHHCCCCCHHHHHH
T ss_conf 98178884999998728999999868--9999999989968778899866887689899987098756500212199999
Q ss_pred HHHHHHHHCCCCCEEECCCCHHHHHHHHHHH----CC-CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCEEC
Q ss_conf 6776777323640230100001688865420----00-000045789886521100000088777654200246752003
Q gi|254780636|r 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFG----VR-VRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138 (207)
Q Consensus 64 ~~L~~ll~d~~i~KV~Hn~~~D~~~L~~~~g----i~-~~~i~DT~ias~l~~~~~~~~~L~~L~~~~lg~~ldK~~q~S 138 (207)
+.+.+++.+ ..-|+||+.||..+|.+.+. .. +.+++||+-.++.... ..+++|.+++++ +|+...+.
T Consensus 84 ~~~~~~~~~--~~~v~hn~~fD~~~L~~~~~~~~~~~~~~~~id~~~~~~~~~~-~~~~~L~~l~~~-~gi~~~~~---- 155 (186)
T 2p1j_A 84 PEFLGFLED--SIIVAHNANFDYRFLRLWIKKVMGLDWERPYIDTLALAKSLLK-LRSYSLDSVVEK-LGLGPFRH---- 155 (186)
T ss_dssp HHHHHHSSS--CEEEETTHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHTC-CSCCSHHHHHHH-TTCCSTTC----
T ss_pred HHHHHHCCC--CEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCC-CCCCCHHHHHHH-CCCCCCCC----
T ss_conf 999974699--9899977898799999999984498766762020999998656-789889999998-69998989----
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf 656544323689999864599999999999999974918
Q gi|254780636|r 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 (207)
Q Consensus 139 dW~~rpLs~~Qi~YAA~Dv~~l~~L~~~l~~~L~~~~~~ 177 (207)
.=|..||..+.++|.++.++++++|..
T Consensus 156 ------------H~Al~Da~~t~~l~~~l~~~~k~~G~~ 182 (186)
T 2p1j_A 156 ------------HRALDDARVTAQVFLRFVEMMKKEGHH 182 (186)
T ss_dssp ------------CHHHHHHHHHHHHHHHHTTCC------
T ss_pred ------------CCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf ------------788999999999999999999824997