HHsearch results for GI: 254780636 and protein with PDBid: 2p1j_A

>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=99.05  E-value=3.1e-10  Score=77.45  Aligned_cols=142  Identities=20%  Similarity=0.300  Sum_probs=87.5

Q ss_pred             HHHCCCCCCEEEECCCCCCCCCCCEEEEEEEEE---CCCC----E-EEECCCCCCCC----------------------C
Q ss_conf             784248982799717778985445079999841---8942----8-99746577857----------------------0
Q gi|254780636|r   14 ECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP---GDGT----V-DIIRIAAGQKN----------------------A   63 (207)
Q Consensus        14 ~~~l~~~~~iaiDtEt~~l~~~~~~l~LiQl~~---~~~~----~-~l~~~~~~~~~----------------------~   63 (207)
                      +--+.....|.+|+||||++|.++++  ||++.   .++.    + .++........                      .
T Consensus         6 ~~~~~~~~yvviD~ETTGl~~~~~~I--ieig~v~~~~~~i~~~~~~~v~p~~~~~~~~~~i~gi~~~~~~~~~~~~~~~   83 (186)
T 2p1j_A            6 DSTFGDATFVVLDFETTGLDPQVDEI--IEIGAVKIQGGQIVDEYHTLIKPSREISRKSSEITGITQEMLENKRSIEEVL   83 (186)
T ss_dssp             -------CEEEEEEEESCSCTTTCCE--EEEEEEEEETTEEEEEEEEECBCSSCCCHHHHHHHCCCHHHHTTCCBHHHHH
T ss_pred             CCCCCCCCEEEEEEECCCCCCCCCEE--EEEEEEEEECCEEEEEEEEEECCCCCCCHHHHHHCCCCHHHCCCCCHHHHHH
T ss_conf             98178884999998728999999868--9999999989968778899866887689899987098756500212199999


Q ss_pred             HHHHHHHHCCCCCEEECCCCHHHHHHHHHHH----CC-CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCEEC
Q ss_conf             6776777323640230100001688865420----00-000045789886521100000088777654200246752003
Q gi|254780636|r   64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFG----VR-VRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS  138 (207)
Q Consensus        64 ~~L~~ll~d~~i~KV~Hn~~~D~~~L~~~~g----i~-~~~i~DT~ias~l~~~~~~~~~L~~L~~~~lg~~ldK~~q~S  138 (207)
                      +.+.+++.+  ..-|+||+.||..+|.+.+.    .. +.+++||+-.++.... ..+++|.+++++ +|+...+.    
T Consensus        84 ~~~~~~~~~--~~~v~hn~~fD~~~L~~~~~~~~~~~~~~~~id~~~~~~~~~~-~~~~~L~~l~~~-~gi~~~~~----  155 (186)
T 2p1j_A           84 PEFLGFLED--SIIVAHNANFDYRFLRLWIKKVMGLDWERPYIDTLALAKSLLK-LRSYSLDSVVEK-LGLGPFRH----  155 (186)
T ss_dssp             HHHHHHSSS--CEEEETTHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHTC-CSCCSHHHHHHH-TTCCSTTC----
T ss_pred             HHHHHHCCC--CEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCC-CCCCCHHHHHHH-CCCCCCCC----
T ss_conf             999974699--9899977898799999999984498766762020999998656-789889999998-69998989----


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf             656544323689999864599999999999999974918
Q gi|254780636|r  139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS  177 (207)
Q Consensus       139 dW~~rpLs~~Qi~YAA~Dv~~l~~L~~~l~~~L~~~~~~  177 (207)
                                  .=|..||..+.++|.++.++++++|..
T Consensus       156 ------------H~Al~Da~~t~~l~~~l~~~~k~~G~~  182 (186)
T 2p1j_A          156 ------------HRALDDARVTAQVFLRFVEMMKKEGHH  182 (186)
T ss_dssp             ------------CHHHHHHHHHHHHHHHHTTCC------
T ss_pred             ------------CCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             ------------788999999999999999999824997