HHsearch results for GI: 254780636 and protein with PDBid: 2py5_A

>2py5_A DNA polymerase; protein-DNA complex, replication, transferase/DNA complex; HET: DNA; 1.60A {Bacillus phage PHI29} SCOP: c.55.3.5 e.8.1.1 PDB: 1xhz_A* 1xhx_A* 2ex3_A* 1xi1_A* 2pyj_A* 2pyl_A* 2pzs_A*
Probab=97.34  E-value=0.0035  Score=36.51  Aligned_cols=142  Identities=11%  Similarity=0.049  Sum_probs=74.6

Q ss_pred             CCCEEEECCCCCCCCCCCEEEEEEEEECCCC-EEEECCCCCCCCCHHHHHHHH--CCCCCEEECCCCHHHHHHHHHHHC-
Q ss_conf             9827997177789854450799998418942-899746577857067767773--236402301000016888654200-
Q gi|254780636|r   20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGT-VDIIRIAAGQKNAPNLVGMLV--DEKREKIFHYGRFDIAVLFYTFGV-   95 (207)
Q Consensus        20 ~~~iaiDtEt~~l~~~~~~l~LiQl~~~~~~-~~l~~~~~~~~~~~~L~~ll~--d~~i~KV~Hn~~~D~~~L~~~~gi-   95 (207)
                      -+++.+|.||+ .+....++..+-+....+. .+-+.     .....+.+.+.  ||.|  +|||.+||..++..++.. 
T Consensus         6 ~~~~~~D~Et~-~~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~~f~~~i~~~dpdi--~~hNl~FD~~~i~~~~~~~   77 (575)
T 2py5_A            6 RKMYSCAFETT-TKVEDCRVWAYGYMNIEDHSEYKIG-----NSLDEFMAWVLKVQADL--YFHNLKFAGAFIINWLERN   77 (575)
T ss_dssp             CCEEEEEEEEC-CBTTBCCEEEEEEEESSCTTCEEEE-----SCHHHHHHHHHHHCCEE--EETTHHHHHHHHHHHHHHT
T ss_pred             CEEEEEEEEEC-CCCCCCEEEEEEEEECCCCEEEEHH-----HHHHHHHHHHHHCCCCE--EEECCCCCHHHHHHHHHHC
T ss_conf             51799999706-8977731479999717984077708-----99999999998659979--9988757999999999970


Q ss_pred             --CCCCHHH----------H-HHH---------------HHHHHHHC-CCHHHHHHHHHHHCCCCCCCC---EECCCCCC
Q ss_conf             --0000045----------7-898---------------86521100-000088777654200246752---00365654
Q gi|254780636|r   96 --RVRPVFC----------T-KIA---------------SRLTRTYT-NQHGLKDNLKELLGINISKAQ---QSSDWSAD  143 (207)
Q Consensus        96 --~~~~i~D----------T-~ia---------------s~l~~~~~-~~~~L~~L~~~~lg~~ldK~~---q~SdW~~r  143 (207)
                        ....-.+          . .+.               -.+.+++. .+.||.++++.+ +....|..   ...+|...
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~DS~~l~~~SL~~va~~f-~l~~~K~~~~~~~~~~~~~  156 (575)
T 2py5_A           78 GFKWSADGLPNTYNTIISRMGQWYMIDICLGYKGKRKIHTVIYDSLKKLPFPVKKIAKDF-KLTVLKGDIDYHKERPVGY  156 (575)
T ss_dssp             TCEECTTCCTTEEEEEEBTTCCEEEEEEEEEEETTEEEEEEEEEHHHHSCSCHHHHHHHT-TCCCCSSCCCTTSCCCTTC
T ss_pred             CCCCEECCCCCCCCCEEEECCEEEEEEEEEEECCEEEEEEEEEECCCCCCCCHHHHHHHH-CCCCCCCCCCHHHCCHHHH
T ss_conf             986203246766652267354579998999603301368999842144844799999873-7454556477444102233


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             432368999986459999999999999
Q gi|254780636|r  144 DLSDEQLQYAASDVVHLHALRLQFTEK  170 (207)
Q Consensus       144 pLs~~Qi~YAA~Dv~~l~~L~~~l~~~  170 (207)
                      .+.++.+.|+..||..|.+++..+.+.
T Consensus       157 ~~~~~~~~Y~~~Dv~ll~~i~~~~~~~  183 (575)
T 2py5_A          157 KITPEEYAYIKNDIQIIAEALLIQFKQ  183 (575)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             232989999999999999999999998