PSIBLAST alignment of GI: 254780636 and protein with PDB id: 1yt3

gi|75765643|pdb|1YT3|A Chain A, Crystal Structure Of Escherichia Coli Rnase D, An Exoribonuclease Involved In Structured Rna Processing Length = 375

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 48/192 (25%), Positives = 83/192 (43%), Gaps = 6/192 (3%)

Query: 2   TTIRVHEGD--IPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58
              ++   D  + + C A R   AIA+DTE +       +L ++QL  G+    I  +  
Sbjct: 1   MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL-- 58

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
           G  +   L  +L D    K  H G  D+ V    FG   +P+  T+I +          G
Sbjct: 59  GITDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPM-SWG 117

Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
               ++E  G+ + K++  +DW A  L++ Q +YAA+DV +L  +  +   + +  G   
Sbjct: 118 FASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLP 177

Query: 179 LATSCCNFLMDR 190
            A   C  +  R
Sbjct: 178 AALDECRLMQMR 189