RPSBLAST alignment for GI: 254780636 and conserved domain: TIGR01388
>gnl|CDD|130455 TIGR01388, rnd, ribonuclease D. This model describes ribonuclease D, a 3'-exonuclease shown to act on tRNA both in vitro and when overexpressed in vivo. Trusted members of this family are restricted to the Proteobacteria; Aquifex, Mycobacterial, and eukaryotic homologs are not full-length homologs. Ribonuclease D is not essential in E. coli and is deleterious when overexpressed. Its precise biological role is still unknown. Length = 367
Score = 92.5 bits (230), Expect = 7e-20
Identities = 55/194 (28%), Positives = 92/194 (47%), Gaps = 14/194 (7%)
Query: 7 HEGDIPAEC-AARYVDAIAVDTETLGLMPRRDR-----LCIVQLSPGDGTVDIIRIAAGQ 60
+ ++ C A R +A+DTE + R+R L ++Q++ G+ I +
Sbjct: 4 TDDELATVCEAVRTFPFVALDTEFV-----RERTFWPQLGLIQVADGEQLALIDPLVIID 58
Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
+ L +L DE K+ H D+ V FG +P+F T+IA+ + G
Sbjct: 59 WSP--LKELLRDESVVKVLHAASEDLEVFLNLFGELPQPLFDTQIAAAFC-GFGMSMGYA 115
Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
++E+LG+ + K++ +DW A L+D QL+YAA+DV +L L + E+L+ GR
Sbjct: 116 KLVQEVLGVELDKSESRTDWLARPLTDAQLEYAAADVTYLLPLYAKLMERLEESGRLAWL 175
Query: 181 TSCCNFLMDRAELD 194
C L DR
Sbjct: 176 EEECTLLTDRRTYV 189