HHsearch alignment for GI: 254780638 and conserved domain: COG1107

>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair].

Probab=97.54  E-value=3.7e-05  Score=57.55  Aligned_cols=55  Identities=18%  Similarity=0.376  Sum_probs=24.0

Q ss_pred             CCCCCEEEECCEECCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH-HHHHCCCCCCCCCCC
Q ss_conf             17788789888102006898865279999999298999999999999-998728888810058
Q gi|254780638|r  309 TQTGKQFRLKGKGMPVINSGRKGDLYVQVQVETPQKLNKRQRELLEE-FEQISSQDNNPQSTG  370 (384)
Q Consensus       309 ~~~~~~~~i~g~G~p~~~~~~rGdl~i~~~v~~P~~Ls~~qk~ll~~-l~~~~~~~~~~~~~~  370 (384)
T Consensus       259 ievGdiV~ViG~V~-----~r~g~lQiE--~~~me~L~G~ea~eVr~rid~ald~~AeP~~~~  314 (715)
T COG1107         259 IEVGDIVEVIGEVT-----RRDGRLQIE--IEAMEKLTGDEAAEVRKRIDEALDRRAEPADVG  314 (715)
T ss_pred             CCCCCEEEEEEEEE-----ECCCCEEEE--EHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             87785699987775-----047827876--243577518518999999999986203875345