HHsearch alignment for GI: 254780638 and conserved domain: COG1107
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair].
Probab=95.90 E-value=0.008 Score=40.81 Aligned_cols=64 Identities=34% Similarity=0.828 Sum_probs=27.5
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------------EEEEEEEECCCCCCCCEEE-ECCCCCCCCCCEE
Q ss_conf 000234322578854210355310112100110------------0124686166656554698-3541200112100
Q gi|254780638|r 153 KCSTCSGSGAKPGTNPMDCNICNGSGRVYTTAQ------------SFFSIERACSTCRGSGQII-PHPCSKCHGQGRV 217 (384)
Q Consensus 153 ~C~~C~G~g~~~~~~~~~C~~C~G~G~~~~~~~------------~~~~~~~~C~~C~G~g~i~-~~~c~~C~G~g~~ 217 (384)
T Consensus 4 ~C~~C~g~G~i~-v~~e~c~vc~gtG~~~~~d~k~~~~~~~~~~d~~~~~~~pc~~c~gkG~V~v~~~c~~c~G~gkv 80 (715)
T COG1107 4 KCPECGGKGKIV-VGEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTVYDTCPECGGTGKV 80 (715)
T ss_pred CCCCCCCCCEEE-EEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCEECCCEEEEEEEECCCCCCCEEE
T ss_conf 265668986275-31356564365134233483553112012434110379877711055168988625667981037