HHsearch alignment for GI: 254780638 and conserved domain: TIGR01213
>TIGR01213 TIGR01213 conserved hypothetical protein TIGR01213; InterPro: IPR005912 The members of this family of conserved hypothetical proteins show a low level of similarity to several predicted RNA pseudouridine synthases. All trusted members of this family are archaeal. Several eukaryotic homologs lack N-terminal homology including two CXXC motifs. .
Probab=96.90 E-value=0.00042 Score=50.04 Aligned_cols=68 Identities=25% Similarity=0.572 Sum_probs=51.1
Q ss_pred CCCCCCCCEEEEEEEECCCCCCCCEEEECCCCCCCCCCEECCCCCCCHHHHHCCC--CCCCEEECCCCCC
Q ss_conf 1210011001246861666565546983541200112100011100000110011--4850120367765
Q gi|254780638|r 178 GRVYTTAQSFFSIERACSTCRGSGQIIPHPCSKCHGQGRVSEEKLLSVNVPPGVD--DGTRIRLSGEGGA 245 (384)
Q Consensus 178 G~~~~~~~~~~~~~~~C~~C~G~g~i~~~~c~~C~G~g~~~~~~~~~I~Ip~G~~--~G~~i~~~g~G~~ 245 (384)
T Consensus 201 GRYRKL~RgIPQT~WP~r~C~G~GtlvdsPCe~CnyTGk~y~~sve~~i~~p~~~~~~G~~~~fHGaGRE 270 (450)
T TIGR01213 201 GRYRKLVRGIPQTRWPCRKCRGKGTLVDSPCERCNYTGKLYPESVEELIAKPFLKATGGTDAVFHGAGRE 270 (450)
T ss_pred EEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEEHHHHHHCCCEEEEEEECCCC
T ss_conf 1232321788888886568884143515888777888775874068882014664228806999625664