Query gi|254780638|ref|YP_003065051.1| molecular chaperone protein DnaJ [Candidatus Liberibacter asiaticus str. psy62] Match_columns 384 No_of_seqs 155 out of 4697 Neff 7.9 Searched_HMMs 23785 Date Tue May 31 21:55:08 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780638.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3lz8_A Putative chaperone DNAJ 100.0 0 0 547.4 15.6 303 1-372 25-327 (329) 2 1nlt_A Protein YDJ1, mitochond 100.0 0 0 399.7 14.7 236 118-356 5-247 (248) 3 2q2g_A HSP40 protein, heat sho 100.0 6.5E-39 2.7E-43 298.3 13.7 177 124-358 3-180 (180) 4 2qld_A DNAJ homolog subfamily 100.0 1E-38 4.3E-43 296.9 12.7 177 123-356 3-180 (183) 5 1c3g_A Heat shock protein 40; 100.0 7.8E-37 3.3E-41 283.4 9.4 169 125-354 1-170 (170) 6 1bq0_A DNAJ, HSP40; chaperone, 100.0 1.6E-29 6.9E-34 230.8 3.0 102 2-109 1-102 (103) 7 3i38_A Putative chaperone DNAJ 99.9 1.3E-23 5.3E-28 188.6 11.8 105 262-371 2-106 (109) 8 2o37_A Protein SIS1; HSP40, J- 99.9 2.3E-23 9.5E-28 186.8 9.9 81 1-84 5-85 (92) 9 2ctq_A DNAJ homolog subfamily 99.9 4.6E-24 1.9E-28 191.7 6.2 71 3-73 19-89 (112) 10 2ctw_A DNAJ homolog subfamily 99.9 2E-23 8.5E-28 187.1 8.2 74 2-75 15-88 (109) 11 2ctr_A DNAJ homolog subfamily 99.9 7.4E-23 3.1E-27 183.1 9.1 77 2-79 5-81 (88) 12 2yua_A Williams-beuren syndrom 99.9 6.3E-23 2.6E-27 183.6 8.4 71 1-71 14-84 (99) 13 1hdj_A Human HSP40, HDJ-1; mol 99.9 1.2E-22 4.9E-27 181.6 8.4 74 1-76 1-74 (77) 14 2dn9_A DNAJ homolog subfamily 99.9 5E-22 2.1E-26 177.1 7.8 70 2-71 5-74 (79) 15 2qsa_A DNAJ homolog DNJ-2; J-d 99.9 3.8E-22 1.6E-26 178.0 6.4 69 3-71 14-86 (109) 16 2dmx_A DNAJ homolog subfamily 99.9 4.3E-22 1.8E-26 177.6 6.5 75 4-78 9-84 (92) 17 1xao_A YDJ1, mitochondrial pro 99.8 5.8E-21 2.4E-25 169.5 10.1 91 266-356 1-95 (121) 18 1fpo_A HSC20, chaperone protei 99.8 1.3E-21 5.4E-26 174.2 6.4 66 5-70 2-74 (171) 19 2cug_A Mkiaa0962 protein; DNAJ 99.8 2.7E-21 1.1E-25 171.9 7.5 68 3-71 16-83 (88) 20 2ctp_A DNAJ homolog subfamily 99.8 5.4E-21 2.3E-25 169.7 7.7 68 3-71 6-73 (78) 21 3hho_A CO-chaperone protein HS 99.8 5.7E-21 2.4E-25 169.5 7.1 68 3-70 3-77 (174) 22 2och_A Hypothetical protein DN 99.8 1.1E-20 4.8E-25 167.3 8.6 69 1-72 5-73 (73) 23 1gh6_A Large T antigen; tumor 99.8 3.8E-23 1.6E-27 185.1 -4.6 64 4-71 8-73 (114) 24 2ej7_A HCG3 gene; HCG3 protein 99.8 8.9E-21 3.7E-25 168.1 6.8 68 4-71 9-77 (82) 25 3bvo_A CO-chaperone protein HS 99.8 1.6E-20 6.6E-25 166.4 7.2 68 3-70 42-116 (207) 26 1wjz_A 1700030A21RIK protein; 99.8 8.2E-21 3.4E-25 168.4 5.2 68 3-70 15-88 (94) 27 1iur_A KIAA0730 protein; DNAJ 99.7 1.9E-18 7.8E-23 151.5 3.0 64 4-70 16-80 (88) 28 2ctt_A DNAJ homolog subfamily 99.7 8.8E-18 3.7E-22 146.6 6.0 101 124-225 1-101 (104) 29 2pf4_E Small T antigen; PP2A, 99.7 9.1E-19 3.8E-23 153.7 -0.1 64 4-71 11-76 (174) 30 1faf_A Large T antigen; J doma 99.6 4.1E-17 1.7E-21 141.8 3.7 62 4-69 11-74 (79) 31 1n4c_A Auxilin; four helix bun 99.5 1.2E-15 4.9E-20 131.4 0.3 63 4-66 117-182 (182) 32 2guz_A Mitochondrial import in 99.5 5.1E-15 2.1E-19 126.8 2.1 59 1-63 11-70 (71) 33 2qwo_B Putative tyrosine-prote 99.4 1.1E-14 4.4E-19 124.5 1.2 56 4-59 33-91 (92) 34 3ag7_A Putative uncharacterize 99.4 1.7E-14 7.2E-19 123.0 2.1 58 3-60 39-103 (106) 35 1exk_A DNAJ protein; extended 99.2 6.3E-12 2.6E-16 104.6 5.5 78 141-219 1-78 (79) 36 2guz_B Mitochondrial import in 99.2 2.4E-11 1E-15 100.4 4.7 61 1-65 1-64 (65) 37 2ys8_A RAB-related GTP-binding 98.2 2.5E-06 1E-10 64.4 6.8 54 3-57 26-79 (90) 38 1nlt_A Protein YDJ1, mitochond 98.2 2E-06 8.6E-11 65.0 5.2 46 219-264 187-234 (248) 39 2qld_A DNAJ homolog subfamily 98.1 1.1E-05 4.7E-10 59.8 7.5 43 221-263 122-165 (183) 40 2k3v_A Tetraheme cytochrome C- 98.1 4.2E-07 1.8E-11 70.0 0.2 67 153-219 14-86 (86) 41 2q2g_A HSP40 protein, heat sho 97.9 1.4E-05 6E-10 59.0 6.1 43 221-263 120-163 (180) 42 1c3g_A Heat shock protein 40; 97.9 1.8E-05 7.7E-10 58.2 6.2 44 220-263 113-157 (170) 43 3i38_A Putative chaperone DNAJ 97.7 1.2E-05 5.1E-10 59.5 3.0 73 121-265 8-80 (109) 44 3lz8_A Putative chaperone DNAJ 97.5 4.1E-05 1.7E-09 55.7 3.0 42 221-264 258-300 (329) 45 1xao_A YDJ1, mitochondrial pro 97.5 3.6E-05 1.5E-09 56.1 2.3 73 122-263 4-78 (121) 46 2ctt_A DNAJ homolog subfamily 95.3 0.01 4.3E-07 38.5 3.1 45 152-205 46-95 (104) 47 1exk_A DNAJ protein; extended 93.2 0.03 1.2E-06 35.2 1.9 26 169-203 51-76 (79) 48 2bx9_A Anti-trap, AT, tryptoph 90.2 0.071 3E-06 32.5 1.1 27 191-217 9-35 (53) 49 3lcz_A YCZA, inhibitor of trap 90.0 0.075 3.1E-06 32.3 1.1 27 191-217 9-35 (53) 50 1m1q_A Small tetraheme cytochr 89.0 0.034 1.4E-06 34.7 -1.3 68 153-220 14-87 (91) 51 2bx9_A Anti-trap, AT, tryptoph 85.4 0.34 1.4E-05 27.6 2.1 12 193-204 25-36 (53) 52 3lcz_A YCZA, inhibitor of trap 85.2 0.35 1.5E-05 27.5 2.1 13 193-205 25-37 (53) 53 2k3v_A Tetraheme cytochrome C- 83.8 0.15 6.2E-06 30.2 -0.3 42 153-203 34-84 (86) 54 2dzj_A Synaptic glycoprotein S 78.0 0.48 2E-05 26.5 0.7 33 5-37 22-55 (88) 55 1cf7_A Protein (transcription 66.6 4.8 0.0002 19.3 3.6 45 14-69 8-52 (76) 56 3epv_A CNRX, nickel and cobalt 52.4 11 0.00046 16.7 5.1 32 45-77 76-107 (109) 57 1p9r_A General secretion pathw 46.9 10 0.00042 17.0 2.5 34 317-353 335-368 (418) 58 1y0p_A Fumarate reductase flav 45.3 4.5 0.00019 19.5 0.5 16 47-62 193-208 (571) 59 1gyx_A YDCE, B1461, hypothetic 42.8 15 0.00064 15.7 3.4 23 335-358 3-26 (76) 60 2cqn_A Formin-binding protein 41.6 16 0.00066 15.6 6.8 60 11-72 1-64 (77) 61 1wz6_A HMG-box transcription f 38.7 17 0.00073 15.3 5.3 44 22-70 19-62 (82) 62 2r6f_A Excinuclease ABC subuni 38.5 14 0.00058 16.0 2.1 19 148-166 418-436 (972) 63 2jrp_A Putative cytoplasmic pr 38.2 18 0.00075 15.2 3.7 52 151-213 2-59 (81) 64 1wgf_A Upstream binding factor 38.0 18 0.00075 15.2 5.1 42 22-68 32-73 (90) 65 2jne_A Hypothetical protein YF 37.5 18 0.00076 15.2 3.3 56 148-214 29-90 (101) 66 1vq8_S 50S ribosomal protein L 35.4 19 0.00079 15.1 2.4 17 12-28 29-45 (85) 67 2kdx_A HYPA, hydrogenase/ureas 33.4 18 0.00076 15.2 2.0 31 148-178 70-100 (119) 68 2qkd_A Zinc finger protein ZPR 32.7 21 0.0009 14.7 3.9 27 289-320 295-321 (404) 69 2crj_A SWI/SNF-related matrix- 31.7 22 0.00094 14.5 4.7 43 23-70 20-62 (92) 70 3m1g_A Putative glutathione S- 31.1 19 0.00081 15.0 1.9 16 341-356 177-192 (362) 71 2bx2_L Ribonuclease E, RNAse E 30.5 9.3 0.00039 17.2 0.2 21 13-33 179-199 (517) 72 2dod_A Transcription elongatio 30.0 24 0.001 14.3 5.3 61 15-76 13-73 (82) 73 1d4d_A Flavocytochrome C fumar 29.9 9.2 0.00039 17.3 0.1 17 46-62 192-208 (572) 74 2fiy_A Protein FDHE homolog; F 29.7 17 0.00073 15.3 1.4 47 168-214 182-231 (309) 75 1aie_A P53; oligomer, DNA; 1.5 28.3 24 0.001 14.3 2.0 15 42-56 11-25 (31) 76 1qo8_A Flavocytochrome C3 fuma 27.2 10 0.00042 17.0 -0.1 18 45-62 186-203 (566) 77 1olg_A Tumor suppressor P53 (o 25.8 28 0.0012 13.8 2.0 15 42-56 18-32 (42) 78 1uzc_A Hypothetical protein FL 25.6 28 0.0012 13.8 3.4 55 14-71 10-67 (71) 79 2e6o_A HMG box-containing prot 25.5 28 0.0012 13.8 4.3 41 23-68 30-70 (87) 80 2vf7_A UVRA2, excinuclease ABC 23.9 30 0.0013 13.6 2.0 18 148-165 281-298 (842) 81 3fn2_A Putative sensor histidi 23.3 19 0.00078 15.1 0.6 36 43-78 17-56 (106) 82 2gmg_A Hypothetical protein PF 21.6 33 0.0014 13.3 1.7 10 167-176 83-92 (105) 83 3f27_D Transcription factor SO 21.2 34 0.0014 13.2 4.4 41 23-68 19-59 (83) 84 1nnq_A Rubrerythrin; structura 21.2 28 0.0012 13.8 1.2 28 148-177 136-163 (171) 85 1a1u_A P53; oligomerization do 20.9 34 0.0014 13.2 2.0 15 42-56 13-27 (35) 86 1jei_A Emerin; membrane protei 20.4 16 0.00067 15.6 -0.2 19 53-71 2-20 (53) No 1 >3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein structure initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Probab=100.00 E-value=0 Score=547.38 Aligned_cols=303 Identities=33% Similarity=0.596 Sum_probs=246.1 Q ss_pred CCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCC Q ss_conf 98745248718799889999999999999997569988798799999999999876099899999877248765314555 Q gi|254780638|r 1 MKKADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDPQKRALYDQGGHEALEYGAQS 80 (384) Q Consensus 1 ~~~~DyY~iLGV~~~As~~eIKkAYrklA~k~HPDkn~~d~~A~ekFkeI~eAYevLsD~~kR~~YD~~G~~~~~~~~~~ 80 (384) |+.+|||+||||+++||++||||||||||+|||||||+ +++|++|||+|+|||||||||+||++||++|..+...+... T Consensus 25 m~~kDyY~iLGV~~~AS~~EIKkAYRkLA~k~HPDkn~-~~~AeekFkeI~eAYevLsD~~kR~~YD~~g~~~~~~~~~~ 103 (329) T 3lz8_A 25 MELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSK-ENDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQHRNDPGFGR 103 (329) T ss_dssp -------------------------------------------------------------------------------- T ss_pred CCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCC-CCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCC T ss_conf 66477789809999979999999999999986889897-94699999999999972103445555666653035877675 Q ss_pred CCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCEECCCCCC Q ss_conf 66521001443222222334443561013760344422221222221123222100000135544455443100023432 Q gi|254780638|r 81 QGAGGFGAGMYGNSDFSELFEGIFGGIMGSGRSYKRSSSTGEAGADLRYNLEISLEEAFSGKTVQIRFPTAVKCSTCSGS 160 (384) Q Consensus 81 ~~~~~~~~~~~~~~~~~d~f~~~f~~~~~~~~~~~~~~~~~~~~~d~~~~~~islee~~~G~~~~i~~~~~~~C~~C~G~ 160 (384) .. .+..+.....++.++|..+|+..... .......++.++...+.+++++.+.|....+.+.. T Consensus 104 ~~--~~~~~~~~~~~~~d~~~~~~~~~~~~-----~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~---------- 166 (329) T 3lz8_A 104 QR--QTHEQSYSQQDFDDIFSSMFGQQAHQ-----RRRQHAARGHDLEIEVAVFLEETLAEQTRTISYNL---------- 166 (329) T ss_dssp ----------------------------------------CCCCCCEEEEECCCTTGGGSCEEEEEEEEE---------- T ss_pred CC--CCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCC---------- T ss_conf 45--65677667888544330304676555-----55566667887033112221101245532222124---------- Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEECCCCCCCCCCEECCCCCCCHHHHHCCCCCCCEEEC Q ss_conf 25788542103553101121001100124686166656554698354120011210001110000011001148501203 Q gi|254780638|r 161 GAKPGTNPMDCNICNGSGRVYTTAQSFFSIERACSTCRGSGQIIPHPCSKCHGQGRVSEEKLLSVNVPPGVDDGTRIRLS 240 (384) Q Consensus 161 g~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~C~~C~G~g~i~~~~c~~C~G~g~~~~~~~~~I~Ip~G~~~G~~i~~~ 240 (384) .|..|.+.+...+.++++|.||||+.+|++|+++ T Consensus 167 ----------------------------------------------~~~~~~~~~~~~~~~~~~v~ip~G~~~G~~i~~~ 200 (329) T 3lz8_A 167 ----------------------------------------------PVYNVFGMIESETPKTLNVKIPAGVVDGQRIRLK 200 (329) T ss_dssp ----------------------------------------------EECCSCC-CCEEEEEEEEEEECTTCCTTCEEEES T ss_pred ----------------------------------------------CCCCCCCCEEECCCCEECCCCCCCCCCCEEEEEC T ss_conf ----------------------------------------------6534467312026743788679898598289989 Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCCCEEEECCCCEEEEEECHHHHCCCCEEEEECCCCCCCCEEECCCCCCCCEEEECCE Q ss_conf 67765678841664157531034684286414846999846665135424885167888231011685177887898881 Q gi|254780638|r 241 GEGGAGVYGGAPGDLYIFISVKKHQFFKRDGADLYCTVPISIVTVAMGGTFDVATLDATHSRVTIPEGTQTGKQFRLKGK 320 (384) Q Consensus 241 g~G~~~~~~~~~GDl~i~i~~~~h~~f~r~g~dL~~~~~I~l~eal~G~~~~i~tldG~~i~i~i~~~~~~~~~~~i~g~ 320 (384) |+|++.+.+..+|||+|+|.+++|+.|+|+|+||+++++|++++||+|+++.|+||+|. +.|+||++++||++++|+|+ T Consensus 201 g~G~~~~~~~~~GDl~i~i~~~~~~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~tldg~-~~v~ip~g~~~G~~~ri~Gk 279 (329) T 3lz8_A 201 GQGTPGENGGPNGDLWLVIHIAPHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKES-ILLTVPPGSQAGQRLRIKGK 279 (329) T ss_dssp SCSCCC---CCCCCEEEEECCCCCSSCEEETTEEEEEEEECHHHHHHCEEEEECCSSSC-EEEEECTTCCTTCEEEETTC T ss_pred CEECCCCCCCCCCCEEEEEEEECCCCCEECCCCEEEEEEECCHHHCCCCCEEEECCCCC-EEEEECCCCCCCCEEEECCC T ss_conf 70335878887875799999824775232277337888866322036993176678987-89987989899968998898 Q ss_pred ECCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHH Q ss_conf 0200689886527999999929899999999999999872888881005889 Q gi|254780638|r 321 GMPVINSGRKGDLYVQVQVETPQKLNKRQRELLEEFEQISSQDNNPQSTGFF 372 (384) Q Consensus 321 G~p~~~~~~rGdl~i~~~v~~P~~Ls~~qk~ll~~l~~~~~~~~~~~~~~~~ 372 (384) |||. .+.||||||+|+|+||++||++||+||++|+++.. ..+|++ +|| T Consensus 280 G~p~--~~~rGDL~V~~~V~~P~~ls~~qkell~~l~~~~~-~~~p~~-~~~ 327 (329) T 3lz8_A 280 GLVS--KTHTGDLFAVIKIVMPTKPDEKARELWQQLAAAEA-SFDPRK-TWG 327 (329) T ss_dssp SCBC--SSCBCCEEEEEEECCCSSCCHHHHHHHHHHHHHTT-TCCTTT-TC- T ss_pred CCCC--CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCC-CCCCHH-HHC T ss_conf 9899--99988989999998699999999999999985136-899414-321 No 2 >1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1 Probab=100.00 E-value=0 Score=399.65 Aligned_cols=236 Identities=31% Similarity=0.647 Sum_probs=215.8 Q ss_pred CCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---EEEEEEEEC Q ss_conf 22212222211232221000001355444554431000234322578854210355310112100110---012468616 Q gi|254780638|r 118 SSTGEAGADLRYNLEISLEEAFSGKTVQIRFPTAVKCSTCSGSGAKPGTNPMDCNICNGSGRVYTTAQ---SFFSIERAC 194 (384) Q Consensus 118 ~~~~~~~~d~~~~~~islee~~~G~~~~i~~~~~~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~~~~~---~~~~~~~~C 194 (384) ++.+++++|+.+++.|||+|+|.|+++++.+.+.+.|+.|+|+|++++. ...|+.|+|+|.+....+ ++++++.+| T Consensus 5 ~~~~~kg~di~~~l~isLee~~~G~~k~i~i~r~~~C~~C~G~G~~~~~-~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C 83 (248) T 1nlt_A 5 PRGPQRGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGA-VKKCTSCNGQGIKFVTRQMGPMIQRFQTEC 83 (248) T ss_dssp ---CCBCCCEEEEEEECTTHHHHCEEEEEEEEEEEECTTTTTCSBSTTT-CCCCTTSSSSSCEEEEEESSSEEEEEECSC T ss_pred CCCCCCCCCEEEEEEEEHHHHHCCCEEEEEEEEEEECCCCCCCCCCCCC-CCCCCCCCCCCCCCCEEECCCCCEEEEEEC T ss_conf 8989899899999898999974797699997763576898563168998-873788799787814540245420446761 Q ss_pred CCCCCCCEEE--ECCCCCCCCCCEECCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCCCCCEEEEEECCCCCCEEEECC Q ss_conf 6656554698--35412001121000111000001100114850120367765678841664157531034684286414 Q gi|254780638|r 195 STCRGSGQII--PHPCSKCHGQGRVSEEKLLSVNVPPGVDDGTRIRLSGEGGAGVYGGAPGDLYIFISVKKHQFFKRDGA 272 (384) Q Consensus 195 ~~C~G~g~i~--~~~c~~C~G~g~~~~~~~~~I~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~i~i~~~~h~~f~r~g~ 272 (384) +.|+|+|+++ ++.|..|+|.|++.++++++|+||||+.+|++|+|+|+|++. ++..+|||+|+|.+++|+.|+|+|+ T Consensus 84 ~~c~g~G~~~~~~~~C~~C~G~g~~~~~~~i~v~Ip~G~~~G~~i~~~g~g~~~-~~~~~GDl~v~i~~~~h~~f~r~g~ 162 (248) T 1nlt_A 84 DVCHGTGDIIDPKDRCKSCNGKKVENERKILEVHVEPGMKDGQRIVFKGEADQA-PDVIPGDVVFIVSERPHKSFKRDGD 162 (248) T ss_dssp TTCSSSSSCCCTTSBCSSSTTSCEEEEEEEEEEEECTTCCTTCEEEETTCSCCC-TTCBCCCEEEEEEECCCSSCEEETT T ss_pred CCCCCCCEEECCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCEEECCCCCCCC-CCCCCCCEEEEEEEECCCCEEEECC T ss_conf 354787147614788711289778857899998969999899699766787731-1478886799999953876189667 Q ss_pred CCEEEEEECHHHHCCCCEEEEECCCCCCCCEEECCC--CCCCCEEEECCEECCCCCCCCCCCEEEEEEEECCCCCCHHHH Q ss_conf 846999846665135424885167888231011685--177887898881020068988652799999992989999999 Q gi|254780638|r 273 DLYCTVPISIVTVAMGGTFDVATLDATHSRVTIPEG--TQTGKQFRLKGKGMPVINSGRKGDLYVQVQVETPQKLNKRQR 350 (384) Q Consensus 273 dL~~~~~I~l~eal~G~~~~i~tldG~~i~i~i~~~--~~~~~~~~i~g~G~p~~~~~~rGdl~i~~~v~~P~~Ls~~qk 350 (384) |||++++|+|+|||+|+++.|+||||+.+.|++|++ ++|+++++|+|+|||..+++.+|||||+|+|+||++||.+|+ T Consensus 163 dL~~~~~Isl~eal~G~~~~i~~ldG~~~~i~i~~g~~~~~g~~~~i~g~G~p~~~~~~~GdL~V~~~v~~P~~l~~~q~ 242 (248) T 1nlt_A 163 DLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIKDPENHFTSEE 242 (248) T ss_dssp EEEEEEEEEHHHHHHCBCCEEECSSSCEEECCBCTTTTCSTTCEEEETTCSCBCSSSCSBCCEEEEEEEECCC------- T ss_pred EEEEEEECCHHHHCCCCEEEEEECCCCEEEECCCCCCEECCCEEEEEECCCCCCCCCCCCCCEEEEEEEECCCCCCHHHH T ss_conf 78999944711204798899774289867750589998899989999389988789899557899999994999998699 Q ss_pred HHHHHH Q ss_conf 999999 Q gi|254780638|r 351 ELLEEF 356 (384) Q Consensus 351 ~ll~~l 356 (384) +| ++| T Consensus 243 ~L-~~l 247 (248) T 1nlt_A 243 NL-KKL 247 (248) T ss_dssp ------ T ss_pred HH-HHC T ss_conf 89-752 No 3 >2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II} Probab=100.00 E-value=6.5e-39 Score=298.31 Aligned_cols=177 Identities=32% Similarity=0.499 Sum_probs=160.8 Q ss_pred CCCCCCCCCCCCCHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEE Q ss_conf 22211232221000001355444554431000234322578854210355310112100110012468616665655469 Q gi|254780638|r 124 GADLRYNLEISLEEAFSGKTVQIRFPTAVKCSTCSGSGAKPGTNPMDCNICNGSGRVYTTAQSFFSIERACSTCRGSGQI 203 (384) Q Consensus 124 ~~d~~~~~~islee~~~G~~~~i~~~~~~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~C~~C~G~g~i 203 (384) +.++...+++||+|+|+|+++.+.+. T Consensus 3 p~~~~~~l~itLee~~~G~~k~i~~~------------------------------------------------------ 28 (180) T 2q2g_A 3 PRSHEVPLLVTLEELYLGKRKKIKVT------------------------------------------------------ 28 (180) T ss_dssp -CEEEEEEEECHHHHHHCEEEEEEEE------------------------------------------------------ T ss_pred CCEEEEEEEEEHHHHHCCCCEEEEEE------------------------------------------------------ T ss_conf 96089996899999728987799986------------------------------------------------------ Q ss_pred EECCCCCCCCCCEECCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCCCCCEEEEEECCCCCCEEEECCCCEEEEEECHH Q ss_conf 83541200112100011100000110011485012036776567884166415753103468428641484699984666 Q gi|254780638|r 204 IPHPCSKCHGQGRVSEEKLLSVNVPPGVDDGTRIRLSGEGGAGVYGGAPGDLYIFISVKKHQFFKRDGADLYCTVPISIV 283 (384) Q Consensus 204 ~~~~c~~C~G~g~~~~~~~~~I~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~i~i~~~~h~~f~r~g~dL~~~~~I~l~ 283 (384) |..|.|.+.+.++++++|+||||+.+|++|+|+|+|++..+++.+|||+|+|++++|+.|+|+|+||+++++|+++ T Consensus 29 ----~~~c~g~~~~~~~~~i~V~Ip~Gv~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~~~~f~r~g~dL~~~~~I~~~ 104 (180) T 2q2g_A 29 ----RKRFIEHKVRNEENIVEVEIKPGWKDGTKLTYSGEGDQESPGTSPGDLVLIIQTKTHPRFTRDDCHLIMKVTIPLV 104 (180) T ss_dssp ----EEEEETTEEEEEEEEEEEEECTTCCTTCEEEETTCSCCSSTTSCCCEEEEEEEECCCSSCEEETTEEEEEEEEEHH T ss_pred ----EEEECCCCEEEEEEEEEEEECCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEECCCCCCEEEEECEEEEECCCCHH T ss_conf ----4786699759777999998599954898999886456789999786689997217998487550328797235768 Q ss_pred HHCCCCEEEEECCCCCCCCEEECCCCCCCCEEEECCEECCCCC-CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHH Q ss_conf 5135424885167888231011685177887898881020068-98865279999999298999999999999998 Q gi|254780638|r 284 TVAMGGTFDVATLDATHSRVTIPEGTQTGKQFRLKGKGMPVIN-SGRKGDLYVQVQVETPQKLNKRQRELLEEFEQ 358 (384) Q Consensus 284 eal~G~~~~i~tldG~~i~i~i~~~~~~~~~~~i~g~G~p~~~-~~~rGdl~i~~~v~~P~~Ls~~qk~ll~~l~~ 358 (384) +|++|+++.|+||||+.+.|++|++++|++.++|+|+|||+.+ .+.+|||||+|+|.||++||++|+++|++|.+ T Consensus 105 ~al~G~~~~i~~ldG~~i~i~i~~~~~~~~~~~i~g~G~P~~~~~~~~GDL~I~~~v~~P~~ls~~q~~~l~~il~ 180 (180) T 2q2g_A 105 RALTGFTCPVTTLDNRNLQIPIKEIVNPKTRKIVPNEGMPIKNQPGQKGDLILEFDICFPKSLTPEQKKLIKEALD 180 (180) T ss_dssp HHHHCEEEEEECTTCCEEEEEECSCCCTTCEEEETTCSCBCSSSTTCBCCEEEEEEEECCSCCCHHHHHHHHHHC- T ss_pred HHCCCCEEEEECCCCCCEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHC T ss_conf 8706989998215655306622982589859999399884389899974899999999199999999999998639 No 4 >2qld_A DNAJ homolog subfamily B member 1; primarily beta sheets, chaperone; 2.70A {Homo sapiens} Probab=100.00 E-value=1e-38 Score=296.93 Aligned_cols=177 Identities=28% Similarity=0.513 Sum_probs=159.3 Q ss_pred CCCCCCCCCCCCCCHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCE Q ss_conf 22221123222100000135544455443100023432257885421035531011210011001246861666565546 Q gi|254780638|r 123 AGADLRYNLEISLEEAFSGKTVQIRFPTAVKCSTCSGSGAKPGTNPMDCNICNGSGRVYTTAQSFFSIERACSTCRGSGQ 202 (384) Q Consensus 123 ~~~d~~~~~~islee~~~G~~~~i~~~~~~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~C~~C~G~g~ 202 (384) +++++.+.+++||||+|.|+++++.+.+ T Consensus 3 ~~p~i~~~l~vtLee~~~G~~k~i~i~~---------------------------------------------------- 30 (183) T 2qld_A 3 QDPPVTHDLRVSLEEIYSGCTKKMKISH---------------------------------------------------- 30 (183) T ss_dssp --CCEEEEEEECHHHHHHCEEEEEEEEC---------------------------------------------------- T ss_pred CCCCEEEEEEEEHHHHHCCCCEEEEEEE---------------------------------------------------- T ss_conf 8999899999889998489827999976---------------------------------------------------- Q ss_pred EEECCCCCCCCCCEECCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCCCCCEEEEEECCCCCCEEEECCCCEEEEEECH Q ss_conf 98354120011210001110000011001148501203677656788416641575310346842864148469998466 Q gi|254780638|r 203 IIPHPCSKCHGQGRVSEEKLLSVNVPPGVDDGTRIRLSGEGGAGVYGGAPGDLYIFISVKKHQFFKRDGADLYCTVPISI 282 (384) Q Consensus 203 i~~~~c~~C~G~g~~~~~~~~~I~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~i~i~~~~h~~f~r~g~dL~~~~~I~l 282 (384) .|..|.|.+++.++++++|+||+|+.+|++|+|+|+|++.. ++.+|||+|+|++++|+.|+|+|+||+++++|++ T Consensus 31 ----~~~~c~G~~~~~~~~~i~I~Ip~G~~~G~~i~~~g~G~~~~-~~~~gDl~i~i~~~~~~~f~r~g~dL~~~~~I~l 105 (183) T 2qld_A 31 ----KRLNPDGKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTS-NNIPADIVFVLKDKPHNIFKRDGSDVIYPARISL 105 (183) T ss_dssp ----CCCTTTSSCCCCCEEEEEEEECTTCCTTCEEEETTCSCCC----CCCCEEEEEEECCCSSCEEETTEEEEEEEEEH T ss_pred ----EEECCCCCEEEEEEEEEEEECCCCCCCCCEEEEECCCCCCC-CCCCCCEEEEEEECCCCCCEECCCEEEEEECCCH T ss_conf ----77569995788766999997189962898999871645689-9986545899776068863004614633501159 Q ss_pred HHHCCCCEEEEECCCCCCCCEEECCCCCCCCEEEECCEECCCCC-CCCCCCEEEEEEEECCCCCCHHHHHHHHHH Q ss_conf 65135424885167888231011685177887898881020068-988652799999992989999999999999 Q gi|254780638|r 283 VTVAMGGTFDVATLDATHSRVTIPEGTQTGKQFRLKGKGMPVIN-SGRKGDLYVQVQVETPQKLNKRQRELLEEF 356 (384) Q Consensus 283 ~eal~G~~~~i~tldG~~i~i~i~~~~~~~~~~~i~g~G~p~~~-~~~rGdl~i~~~v~~P~~Ls~~qk~ll~~l 356 (384) +|||+|+++.|+||+|+.+.|++|++++++++++|+|+|||..+ ++.+|||||+|+|.||++||++|+++|+++ T Consensus 106 ~eal~G~~~~I~~l~G~~v~i~i~~~~~~g~~~~i~g~G~p~~~~~~~~GdL~I~~~v~~P~~ls~~q~~~l~~i 180 (183) T 2qld_A 106 REALCGCTVNVPTLDGRTIPVVFKDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQV 180 (183) T ss_dssp HHHHHCEEEEEECTTSCEEEEEECSCCCTTCEEEETTCSCBCSSCTTSBCCEEEEEEEECCSCCCHHHHHHTC-- T ss_pred HHHHCCCCEEEEECCCCEEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHH T ss_conf 998259858644147987998738961278699967846870799898688999999990999999999999976 No 5 >1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A Probab=100.00 E-value=7.8e-37 Score=283.39 Aligned_cols=169 Identities=28% Similarity=0.459 Sum_probs=151.5 Q ss_pred CCCCCCCCCCCCHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEE Q ss_conf 22112322210000013554445544310002343225788542103553101121001100124686166656554698 Q gi|254780638|r 125 ADLRYNLEISLEEAFSGKTVQIRFPTAVKCSTCSGSGAKPGTNPMDCNICNGSGRVYTTAQSFFSIERACSTCRGSGQII 204 (384) Q Consensus 125 ~d~~~~~~islee~~~G~~~~i~~~~~~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~C~~C~G~g~i~ 204 (384) +++++++++||||+|.|+++.+.+.+.. T Consensus 1 e~i~~~l~itLEe~~~G~~k~i~~~r~~---------------------------------------------------- 28 (170) T 1c3g_A 1 ETVQVNLPVSLEDLFVGKKKSFKIGRKG---------------------------------------------------- 28 (170) T ss_dssp CEEEEEEEECHHHHHHTCEEEEEEEEEE---------------------------------------------------- T ss_pred CCEEEEEEEEHHHHHCCCCEEEEEEEEC---------------------------------------------------- T ss_conf 9599996879999848984899998407---------------------------------------------------- Q ss_pred ECCCCCCCCCCEECCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCCCCCEEEEEECCCCCCEEEECCCCEEEEEECHHH Q ss_conf 35412001121000111000001100114850120367765678841664157531034684286414846999846665 Q gi|254780638|r 205 PHPCSKCHGQGRVSEEKLLSVNVPPGVDDGTRIRLSGEGGAGVYGGAPGDLYIFISVKKHQFFKRDGADLYCTVPISIVT 284 (384) Q Consensus 205 ~~~c~~C~G~g~~~~~~~~~I~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~i~i~~~~h~~f~r~g~dL~~~~~I~l~e 284 (384) .+...+.+.++|.||||+.+|++|+|+|+||+.+.++.+|||+|++++++|+.|+|+|+||+++++|++++ T Consensus 29 ---------~~~~~~~~~i~i~Ip~G~~~G~~i~~~g~G~~~~~~~~~gdl~v~i~~~~h~~f~r~g~dL~~~~~i~~~~ 99 (170) T 1c3g_A 29 ---------PHGASEKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKRDGDDLIYTLPLSFKE 99 (170) T ss_dssp ---------TTTEEEEEEEEEECCTTCCTTCEEEESSCSSBCSSSSCBCEEEEEEEECCCSSEEEETTEEEEEECCBHHH T ss_pred ---------CCCCEEEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCEEEEECCCCCCCEEEECCCEEEEEEEEEHH T ss_conf ---------98740369999998999728989998530112789863685899955579986687088279999741035 Q ss_pred HCCCCEEEEECCCCCCCCEEECCCCCCCCEEEECCEECCCC-CCCCCCCEEEEEEEECCCCCCHHHHHHHH Q ss_conf 13542488516788823101168517788789888102006-89886527999999929899999999999 Q gi|254780638|r 285 VAMGGTFDVATLDATHSRVTIPEGTQTGKQFRLKGKGMPVI-NSGRKGDLYVQVQVETPQKLNKRQRELLE 354 (384) Q Consensus 285 al~G~~~~i~tldG~~i~i~i~~~~~~~~~~~i~g~G~p~~-~~~~rGdl~i~~~v~~P~~Ls~~qk~ll~ 354 (384) |++|+++.|+||||+.+.|++|++++|++.++|+|+|||.. +++.||||||+|+|.||++||++||++|+ T Consensus 100 al~G~~~~i~~ldG~~i~i~i~~~~~~g~~~~i~g~Gmp~~~~~~~~GdL~I~~~V~~P~~l~~~qk~~le 170 (170) T 1c3g_A 100 SLLGFSKTIQTIDGRTLPLSRVQPVQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYPISLNDAQKRAID 170 (170) T ss_dssp HHHCEEEEEECSSSCEEEEEESSCCCTTCEEECTTCSCBCSSCTTSBCCEEEEECCBCCSSCCTTHHHHTC T ss_pred HHCCCCEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHC T ss_conf 63398266402389703234578766897899888777618998996889999999929999999999629 No 6 >1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A Probab=99.95 E-value=1.6e-29 Score=230.84 Aligned_cols=102 Identities=51% Similarity=0.941 Sum_probs=83.9 Q ss_pred CCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 87452487187998899999999999999975699887987999999999998760998999998772487653145556 Q gi|254780638|r 2 KKADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDPQKRALYDQGGHEALEYGAQSQ 81 (384) Q Consensus 2 ~~~DyY~iLGV~~~As~~eIKkAYrklA~k~HPDkn~~d~~A~ekFkeI~eAYevLsD~~kR~~YD~~G~~~~~~~~~~~ 81 (384) +++|||+||||+++||.+|||+|||+||++||||+|+++++|+++|++|++||+|||||++|+.||++|..+...+.... T Consensus 1 A~~dyY~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~~~~F~~I~~Ay~vLsd~~~R~~YD~~g~~~~~~~~~~~ 80 (103) T 1bq0_A 1 AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQGGMGG 80 (103) T ss_dssp CCCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTTSSCSCC--- T ss_pred CCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCC T ss_conf 99877988099999899999999999986623566899889999999999999861899999999812875322578899 Q ss_pred CCCCEECCCCCCCCCCCCCCCCCCCCCC Q ss_conf 6521001443222222334443561013 Q gi|254780638|r 82 GAGGFGAGMYGNSDFSELFEGIFGGIMG 109 (384) Q Consensus 82 ~~~~~~~~~~~~~~~~d~f~~~f~~~~~ 109 (384) .+..+..+|.++|+++|+.++| T Consensus 81 ------~~~~~~~~f~d~f~~~F~~~FG 102 (103) T 1bq0_A 81 ------GGFGGGADFSDIFGDVFGDIFG 102 (103) T ss_dssp ---------------------------- T ss_pred ------CCCCCCCCHHHHHHHHHCCCCC T ss_conf ------9998998978879998654258 No 7 >3i38_A Putative chaperone DNAJ; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp} Probab=99.90 E-value=1.3e-23 Score=188.60 Aligned_cols=105 Identities=28% Similarity=0.569 Sum_probs=96.4 Q ss_pred CCCCCEEEECCCCEEEEEECHHHHCCCCEEEEECCCCCCCCEEECCCCCCCCEEEECCEECCCCCCCCCCCEEEEEEEEC Q ss_conf 34684286414846999846665135424885167888231011685177887898881020068988652799999992 Q gi|254780638|r 262 KKHQFFKRDGADLYCTVPISIVTVAMGGTFDVATLDATHSRVTIPEGTQTGKQFRLKGKGMPVINSGRKGDLYVQVQVET 341 (384) Q Consensus 262 ~~h~~f~r~g~dL~~~~~I~l~eal~G~~~~i~tldG~~i~i~i~~~~~~~~~~~i~g~G~p~~~~~~rGdl~i~~~v~~ 341 (384) .||+.|+|+|+||+++++|+++||++|+++.|+||||+ +.|+||+++++|++++|+|+|||. ++.+|||||+|+|++ T Consensus 2 ~pH~~F~r~G~dL~~~~~I~~~~AllG~~v~v~tldg~-v~i~Ip~gt~~g~~lri~g~G~p~--~~~~GDl~v~~~v~~ 78 (109) T 3i38_A 2 NAHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKES-ILLTVPPGSQAGQRLRIKGKGLVS--KTHTGDLFAVIKIVM 78 (109) T ss_dssp --CCCCEEETTEEEEEEEECHHHHHHCEEEEECCSSSC-EEEEECTTCCTTCEEEETTCSCBC--SSCBCCEEEEEEECC T ss_pred CCCCCCEECCCEEEEEEECCHHHHHCCCEEEEECCCCC-EEEEECCCCCCCCEEEEECCCCCC--CCCCCCEEEEEEEEC T ss_conf 88988468089899998748999858987998279985-878678971699799980889888--899857899999992 Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCCCCH Q ss_conf 989999999999999987288888100588 Q gi|254780638|r 342 PQKLNKRQRELLEEFEQISSQDNNPQSTGF 371 (384) Q Consensus 342 P~~Ls~~qk~ll~~l~~~~~~~~~~~~~~~ 371 (384) |++||++|+++|++|+++.. ..+|++ +| T Consensus 79 P~~ls~~~~~ll~~l~~~~~-~~~pr~-~~ 106 (109) T 3i38_A 79 PTKPDEKARELWQQLAAAEA-SFDPRK-TW 106 (109) T ss_dssp CSSCCHHHHHHHHHHHHHTT-TCCTTC-CC T ss_pred CCCCCHHHHHHHHHHHHHCC-CCCCHH-HH T ss_conf 99999999999999997536-899325-33 No 8 >2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} Probab=99.89 E-value=2.3e-23 Score=186.75 Aligned_cols=81 Identities=48% Similarity=0.854 Sum_probs=73.7 Q ss_pred CCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCC Q ss_conf 98745248718799889999999999999997569988798799999999999876099899999877248765314555 Q gi|254780638|r 1 MKKADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDPQKRALYDQGGHEALEYGAQS 80 (384) Q Consensus 1 ~~~~DyY~iLGV~~~As~~eIKkAYrklA~k~HPDkn~~d~~A~ekFkeI~eAYevLsD~~kR~~YD~~G~~~~~~~~~~ 80 (384) |+++|||+||||+++||.+|||+|||+|+++||||+|+++ +++|++|++||+||||+.+|+.||++|.++++.+.++ T Consensus 5 v~d~~yY~vLgv~~~As~~eIk~aYr~l~~~~HPDk~~~~---~e~f~~i~~Ay~vLsDp~~R~~YD~~G~~~~~~ggP~ 81 (92) T 2o37_A 5 VKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD---TEKFKEISEAFEILNDPQKREIYDQYGLEAARSGGPS 81 (92) T ss_dssp CSCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCC---HHHHHHHHHHHHHHTSHHHHHHHHHHCHHHHHTTCCT T ss_pred CCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCH---HHHHHHHHHHHHHHCCHHHHHHHHHHCHHHHHCCCCC T ss_conf 5534199994999995999999999998654188665899---9999999999999699999999998787765278998 Q ss_pred CCCC Q ss_conf 6652 Q gi|254780638|r 81 QGAG 84 (384) Q Consensus 81 ~~~~ 84 (384) .+.+ T Consensus 82 ~~~~ 85 (92) T 2o37_A 82 FGPG 85 (92) T ss_dssp TCC- T ss_pred CCCC T ss_conf 6200 No 9 >2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=99.89 E-value=4.6e-24 Score=191.72 Aligned_cols=71 Identities=31% Similarity=0.587 Sum_probs=67.5 Q ss_pred CCCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH Q ss_conf 74524871879988999999999999999756998879879999999999987609989999987724876 Q gi|254780638|r 3 KADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDPQKRALYDQGGHEA 73 (384) Q Consensus 3 ~~DyY~iLGV~~~As~~eIKkAYrklA~k~HPDkn~~d~~A~ekFkeI~eAYevLsD~~kR~~YD~~G~~~ 73 (384) ..|||+||||+++||.+|||+|||+||++||||||+++++|+++|++|++||+|||||.+|+.||+++... T Consensus 19 ~~dyY~iLgv~~~as~~eIk~AYr~l~~~~HPDkn~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~~ 89 (112) T 2ctq_A 19 TEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRSQ 89 (112) T ss_dssp CCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHT T ss_pred CCCCHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCC T ss_conf 88808870999995999999999999998784988784899999999999999978999999998725214 No 10 >2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} Probab=99.89 E-value=2e-23 Score=187.10 Aligned_cols=74 Identities=45% Similarity=0.811 Sum_probs=69.4 Q ss_pred CCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH Q ss_conf 87452487187998899999999999999975699887987999999999998760998999998772487653 Q gi|254780638|r 2 KKADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDPQKRALYDQGGHEALE 75 (384) Q Consensus 2 ~~~DyY~iLGV~~~As~~eIKkAYrklA~k~HPDkn~~d~~A~ekFkeI~eAYevLsD~~kR~~YD~~G~~~~~ 75 (384) .++|||+||||+++||.+|||+|||+|+++||||+|++.++|+++|++|++||+|||||.+|+.||++|..+.. T Consensus 15 ~~~dyY~iLgV~~~As~~eIk~ay~~l~~~~HPDk~~~~~~~~~~~~~i~~AY~vLsdp~~R~~YD~~~~~~~~ 88 (109) T 2ctw_A 15 SGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSLGLY 88 (109) T ss_dssp CSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCHHHHH T ss_pred CCCCHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCC T ss_conf 78898888298999899999999999999809975777889999999899999997899999999703886755 No 11 >2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=99.88 E-value=7.4e-23 Score=183.06 Aligned_cols=77 Identities=47% Similarity=0.880 Sum_probs=71.3 Q ss_pred CCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCC Q ss_conf 874524871879988999999999999999756998879879999999999987609989999987724876531455 Q gi|254780638|r 2 KKADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDPQKRALYDQGGHEALEYGAQ 79 (384) Q Consensus 2 ~~~DyY~iLGV~~~As~~eIKkAYrklA~k~HPDkn~~d~~A~ekFkeI~eAYevLsD~~kR~~YD~~G~~~~~~~~~ 79 (384) +..|||+||||+++||.+|||+|||+||++||||+|+ +++++++|+.|++||+|||||.+|++||++|++++..+.+ T Consensus 5 ~~~dyY~vLgv~~~As~~eIk~aYr~l~~~~hPd~~~-~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~g~~~~~~~~~ 81 (88) T 2ctr_A 5 SSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNK-SPDAEAKFREIAEAYETLSDANRRKEYDTLGHSAFTSGKG 81 (88) T ss_dssp CCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCC-SHHHHHHHHHHHHHHHHHHSSHHHHHHHHTCHHHHTCSSS T ss_pred CCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCC-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHCCCCCC T ss_conf 9978888749999959999999999997043898655-4769999999999999969999999998224010106899 No 12 >2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=99.88 E-value=6.3e-23 Score=183.57 Aligned_cols=71 Identities=38% Similarity=0.649 Sum_probs=67.1 Q ss_pred CCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH Q ss_conf 98745248718799889999999999999997569988798799999999999876099899999877248 Q gi|254780638|r 1 MKKADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDPQKRALYDQGGH 71 (384) Q Consensus 1 ~~~~DyY~iLGV~~~As~~eIKkAYrklA~k~HPDkn~~d~~A~ekFkeI~eAYevLsD~~kR~~YD~~G~ 71 (384) ++.+|||+||||+++||.+|||+|||+||++||||+|+++++++++|++|++||+||+|+++|+.||+++. T Consensus 14 ~~~~~~Y~iLgv~~~as~~eIk~aY~~la~~~HPDk~~~~~~~~~~f~~i~~Ay~iL~d~~~R~~YD~~~~ 84 (99) T 2yua_A 14 YSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGLL 84 (99) T ss_dssp SCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHTCC T ss_pred CCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCC T ss_conf 76355998849999969999999999999997965356666899999999999999799999999977687 No 13 >1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 Probab=99.87 E-value=1.2e-22 Score=181.62 Aligned_cols=74 Identities=51% Similarity=0.967 Sum_probs=68.9 Q ss_pred CCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC Q ss_conf 9874524871879988999999999999999756998879879999999999987609989999987724876531 Q gi|254780638|r 1 MKKADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDPQKRALYDQGGHEALEY 76 (384) Q Consensus 1 ~~~~DyY~iLGV~~~As~~eIKkAYrklA~k~HPDkn~~d~~A~ekFkeI~eAYevLsD~~kR~~YD~~G~~~~~~ 76 (384) |.+ |||+||||+++||.+|||+|||+|+++||||+|+ +++++++|++|++||+||+||++|+.||++|.+++++ T Consensus 1 m~k-d~Y~vLgv~~~as~~eIk~ay~~l~~~~hPD~~~-~~~~~~~~~~i~~Ay~vL~d~~~R~~YD~~g~~~~~~ 74 (77) T 1hdj_A 1 MGK-DYYQTLGLARGASDEEIKRAYRRQALRYHPDKNK-EPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGLKG 74 (77) T ss_dssp CCC-CSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCC-CTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGCCS T ss_pred CCC-CHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCC-CCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCC T ss_conf 999-7598859999959999999999999852710269-8409999999999999978999999998443886448 No 14 >2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=99.86 E-value=5e-22 Score=177.12 Aligned_cols=70 Identities=54% Similarity=0.944 Sum_probs=67.1 Q ss_pred CCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH Q ss_conf 8745248718799889999999999999997569988798799999999999876099899999877248 Q gi|254780638|r 2 KKADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDPQKRALYDQGGH 71 (384) Q Consensus 2 ~~~DyY~iLGV~~~As~~eIKkAYrklA~k~HPDkn~~d~~A~ekFkeI~eAYevLsD~~kR~~YD~~G~ 71 (384) +.+|||+||||+++||.+|||+|||+|+++||||+|+++++|+++|++|++||+||+||++|+.||+||. T Consensus 5 ~~~d~Y~iLgv~~~as~~eIk~aYr~l~~~~hPDk~~~~~~a~~~~~~I~~Ay~vL~dp~~R~~YD~~g~ 74 (79) T 2dn9_A 5 SSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGS 74 (79) T ss_dssp CCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCC T ss_pred CCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCC T ss_conf 9998698849999949999999999999765866579967999999999999999799999999865899 No 15 >2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, protein structure initiative; 1.68A {Caenorhabditis elegans} Probab=99.86 E-value=3.8e-22 Score=177.97 Aligned_cols=69 Identities=36% Similarity=0.588 Sum_probs=63.7 Q ss_pred CCCCHHHHCCCCCC-CHHHHHHHHHHHHHHHCCCCCCCCH---HHHHHHHHHHHHHHHHCCHHHHHHHHHHHH Q ss_conf 74524871879988-9999999999999997569988798---799999999999876099899999877248 Q gi|254780638|r 3 KADFYQVLGIDRNA-TDRQLKTAFRSLAMKYHPDQNRNDP---EAKEKFAQISEAYEVLRDPQKRALYDQGGH 71 (384) Q Consensus 3 ~~DyY~iLGV~~~A-s~~eIKkAYrklA~k~HPDkn~~d~---~A~ekFkeI~eAYevLsD~~kR~~YD~~G~ 71 (384) ++|||+||||+++| |.+|||+|||+||++||||+|+++. .|+++|++|++||+|||||++|+.||+++. T Consensus 14 ~~n~Y~vLgv~~~a~s~~eIk~AYrkla~~~HPDk~~~~~~~~~a~~kf~~I~~AyeiLsd~~kR~~YD~~~~ 86 (109) T 2qsa_A 14 LENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLD 86 (109) T ss_dssp TSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHH T ss_pred CCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCC T ss_conf 9984876398999889999999999999998859799946888999999999999999589999999971588 No 16 >2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=99.85 E-value=4.3e-22 Score=177.59 Aligned_cols=75 Identities=45% Similarity=0.876 Sum_probs=68.3 Q ss_pred CCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC-HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCC Q ss_conf 4524871879988999999999999999756998879-87999999999998760998999998772487653145 Q gi|254780638|r 4 ADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRND-PEAKEKFAQISEAYEVLRDPQKRALYDQGGHEALEYGA 78 (384) Q Consensus 4 ~DyY~iLGV~~~As~~eIKkAYrklA~k~HPDkn~~d-~~A~ekFkeI~eAYevLsD~~kR~~YD~~G~~~~~~~~ 78 (384) +|||+||||+++||.+|||+|||+|+++||||+|+++ ++++++|++|++||+||+||.+|+.||++|.++++.+. T Consensus 9 ~DyY~iLgv~~~as~~eIk~aYr~~~~~~hPd~~~~~~~~~~~~~~~i~~Ay~vL~d~~~R~~YD~~g~~~~~~~~ 84 (92) T 2dmx_A 9 ANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCDSWRAGG 84 (92) T ss_dssp CCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCSCSSCCCC T ss_pred CCHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHCCC T ss_conf 7899980999996999999999999988487768886799999999999999993999999999832752332379 No 17 >1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae} Probab=99.84 E-value=5.8e-21 Score=169.48 Aligned_cols=91 Identities=31% Similarity=0.551 Sum_probs=83.5 Q ss_pred CEEEECCCCEEEEEECHHHHCCCCEEEEECCCCCCCCEEECCC--CCCCCEEEECCEECCCCCCCCCCCEEEEEEEECCC Q ss_conf 4286414846999846665135424885167888231011685--17788789888102006898865279999999298 Q gi|254780638|r 266 FFKRDGADLYCTVPISIVTVAMGGTFDVATLDATHSRVTIPEG--TQTGKQFRLKGKGMPVINSGRKGDLYVQVQVETPQ 343 (384) Q Consensus 266 ~f~r~g~dL~~~~~I~l~eal~G~~~~i~tldG~~i~i~i~~~--~~~~~~~~i~g~G~p~~~~~~rGdl~i~~~v~~P~ 343 (384) .|+|+|+||+++++|+|+|||+|+++.|+||||+.+.|++|++ ++||+.++|+|+|||+.+++.||||||+|+|.||+ T Consensus 1 sF~R~G~DL~~~~~Isl~eal~G~~~~I~~ldG~~l~i~i~~g~~~~~g~~~~i~g~GmP~~~~~~~GdL~I~~~v~~P~ 80 (121) T 1xao_A 1 SFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIKFPE 80 (121) T ss_dssp CCEEETTEEEEEEEEEHHHHHHCEEEEEECTTSCEEEEEECTTSCCCTTCEEEETTCSCC------CCCEEEEEEEECCC T ss_pred CCEEECCEEEEEEEECHHHHHCCCEEEEECCCCCEEEEEECCCCEECCCCEEEECCCCCCCCCCCCCCCEEEEEEEECCC T ss_conf 96796989999988189998379879986678875898628997864897689819898878979956789999998499 Q ss_pred C--CCHHHHHHHHHH Q ss_conf 9--999999999999 Q gi|254780638|r 344 K--LNKRQRELLEEF 356 (384) Q Consensus 344 ~--Ls~~qk~ll~~l 356 (384) + ++++|.++|+++ T Consensus 81 ~~~~~~~~l~~L~~~ 95 (121) T 1xao_A 81 NHFTSEENLKKLEEI 95 (121) T ss_dssp TTCSCHHHHHHHHHH T ss_pred CCCCCHHHHHHHHHH T ss_conf 899899999999987 No 18 >1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 Probab=99.84 E-value=1.3e-21 Score=174.17 Aligned_cols=66 Identities=29% Similarity=0.510 Sum_probs=61.3 Q ss_pred CCHHHHCCCCCCC--HHHHHHHHHHHHHHHCCCCCCCCH-----HHHHHHHHHHHHHHHHCCHHHHHHHHHHH Q ss_conf 5248718799889--999999999999997569988798-----79999999999987609989999987724 Q gi|254780638|r 5 DFYQVLGIDRNAT--DRQLKTAFRSLAMKYHPDQNRNDP-----EAKEKFAQISEAYEVLRDPQKRALYDQGG 70 (384) Q Consensus 5 DyY~iLGV~~~As--~~eIKkAYrklA~k~HPDkn~~d~-----~A~ekFkeI~eAYevLsD~~kR~~YD~~G 70 (384) |||+||||+++|| .+|||+|||+||++||||||++++ .|+++|++|++||+|||||.+|+.||... T Consensus 2 dyy~iLgl~~~~~~d~~eIkkaYrkLa~~~HPDk~~~~~~~~~~~a~~~f~~In~AYevL~dp~~R~~Yd~~~ 74 (171) T 1fpo_A 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSL 74 (171) T ss_dssp HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHT T ss_pred CHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH T ss_conf 7588789999999999999999999999869885655207789999999999999999988813889988986 No 19 >2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} Probab=99.84 E-value=2.7e-21 Score=171.90 Aligned_cols=68 Identities=46% Similarity=0.840 Sum_probs=64.4 Q ss_pred CCCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH Q ss_conf 745248718799889999999999999997569988798799999999999876099899999877248 Q gi|254780638|r 3 KADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDPQKRALYDQGGH 71 (384) Q Consensus 3 ~~DyY~iLGV~~~As~~eIKkAYrklA~k~HPDkn~~d~~A~ekFkeI~eAYevLsD~~kR~~YD~~G~ 71 (384) +.|||+||||+++||.+|||+|||+|+++||||+|+ +++++++|++|++||+||+||.+|+.||+||. T Consensus 16 ~~d~Y~iLgv~~~as~~eIkkaY~~l~~~~hPd~~~-~~~~~e~f~~i~~Ay~vLsd~~~R~~YD~~G~ 83 (88) T 2cug_A 16 DFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNK-DPGAEDRFIQISKAYEILSNEEKRTNYDHYGS 83 (88) T ss_dssp SSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCC-STTHHHHHHHHHHHHHHHHSHHHHHHHHHHTT T ss_pred CCCCHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCC-CHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCC T ss_conf 898087779999939999999999999864964479-86799999999999999699999998806899 No 20 >2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=99.83 E-value=5.4e-21 Score=169.68 Aligned_cols=68 Identities=50% Similarity=0.918 Sum_probs=64.5 Q ss_pred CCCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH Q ss_conf 745248718799889999999999999997569988798799999999999876099899999877248 Q gi|254780638|r 3 KADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDPQKRALYDQGGH 71 (384) Q Consensus 3 ~~DyY~iLGV~~~As~~eIKkAYrklA~k~HPDkn~~d~~A~ekFkeI~eAYevLsD~~kR~~YD~~G~ 71 (384) ..|||+||||+++||.+|||+|||+|+++||||+|. +++++++|++|++||+||+||.+|+.||+||. T Consensus 6 ~~dyY~vLgv~~~as~~eIk~aY~~l~~~~hPDk~~-~~~~~~~f~~i~~Ay~iL~d~~~R~~YD~~g~ 73 (78) T 2ctp_A 6 SGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNH-APGATEAFKAIGTAYAVLSNPEKRKQYDQFGS 73 (78) T ss_dssp SCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCS-SHHHHHHHHHHHHHHHHHTSHHHHHHHHHTCS T ss_pred CCCHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCC-CHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCC T ss_conf 998488729899949999999999999750864579-86499999999999999089999999965699 No 21 >3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae} Probab=99.83 E-value=5.7e-21 Score=169.53 Aligned_cols=68 Identities=29% Similarity=0.563 Sum_probs=60.7 Q ss_pred CCCCHHHHCCCC--CCCHHHHHHHHHHHHHHHCCCCCCCCHHH-----HHHHHHHHHHHHHHCCHHHHHHHHHHH Q ss_conf 745248718799--88999999999999999756998879879-----999999999987609989999987724 Q gi|254780638|r 3 KADFYQVLGIDR--NATDRQLKTAFRSLAMKYHPDQNRNDPEA-----KEKFAQISEAYEVLRDPQKRALYDQGG 70 (384) Q Consensus 3 ~~DyY~iLGV~~--~As~~eIKkAYrklA~k~HPDkn~~d~~A-----~ekFkeI~eAYevLsD~~kR~~YD~~G 70 (384) .-|||+||||++ +|+.+|||+|||+||++||||+|++++.+ +++|++|++||+||+||.+|+.||+.. T Consensus 3 ~~nyy~iLgl~~~~~~d~~eIkkaYr~La~~~HPDk~~~~~~~ek~~~~~~f~~In~AY~vL~dp~~R~~Yd~~~ 77 (174) T 3hho_A 3 AMNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRAEYLLSL 77 (174) T ss_dssp -CCHHHHTTCCSSSCCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHH T ss_pred CCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH T ss_conf 868799839998899999999999999999847233432028899989999999999999978834677899997 No 22 >2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, PSI-2, protein structure initiative; 1.86A {Caenorhabditis elegans} Probab=99.83 E-value=1.1e-20 Score=167.35 Aligned_cols=69 Identities=52% Similarity=0.979 Sum_probs=63.8 Q ss_pred CCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH Q ss_conf 987452487187998899999999999999975699887987999999999998760998999998772487 Q gi|254780638|r 1 MKKADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDPQKRALYDQGGHE 72 (384) Q Consensus 1 ~~~~DyY~iLGV~~~As~~eIKkAYrklA~k~HPDkn~~d~~A~ekFkeI~eAYevLsD~~kR~~YD~~G~~ 72 (384) ++++|||+||||+++||.+|||+|||+|+++||||+|+. |+++|.+|++||+||+||.+|+.||+||++ T Consensus 5 ~k~~dyY~iLgv~~~as~~eIk~aYr~l~~~~hPD~~~~---~~~~~~~i~~Ay~vL~dp~~R~~YD~~g~~ 73 (73) T 2och_A 5 VKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPD---GAEQFKQISQAYEVLSDEKKRQIYDQGGEE 73 (73) T ss_dssp -CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTT---CHHHHHHHHHHHHHHTSHHHHHHHHHTC-- T ss_pred CCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCC---HHHHHHHHHHHHHHHCCHHHHHHHHCCCCC T ss_conf 454779998198999599999999999989879699988---999999999999996999999998175889 No 23 >1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 Probab=99.83 E-value=3.8e-23 Score=185.12 Aligned_cols=64 Identities=23% Similarity=0.436 Sum_probs=59.6 Q ss_pred CCCHHHHCCCCCC--CHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH Q ss_conf 4524871879988--9999999999999997569988798799999999999876099899999877248 Q gi|254780638|r 4 ADFYQVLGIDRNA--TDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDPQKRALYDQGGH 71 (384) Q Consensus 4 ~DyY~iLGV~~~A--s~~eIKkAYrklA~k~HPDkn~~d~~A~ekFkeI~eAYevLsD~~kR~~YD~~G~ 71 (384) .|||+||||+++| |+++||+|||+||++||||||++ +++|++|++||+||||+.+|+.||+++. T Consensus 8 ~~~y~lLGl~~~a~~~~~~IKkAYrkla~~~HPDk~~~----~ekF~~I~eAYevLsd~~kR~~yD~~~~ 73 (114) T 1gh6_A 8 LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMEDGVKYAHQPDFGG 73 (114) T ss_dssp HHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT----TTTTHHHHHHHHHHHHHHHSCCSSCCSC T ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC----HHHHHHHHHHHHHHCCHHHHHHHCCCCC T ss_conf 89999919998878899999999999999878674650----2899999999999789899988654476 No 24 >2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=99.82 E-value=8.9e-21 Score=168.12 Aligned_cols=68 Identities=47% Similarity=0.887 Sum_probs=64.0 Q ss_pred CCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCH-HHHHHHHHHHHHHHHHCCHHHHHHHHHHHH Q ss_conf 45248718799889999999999999997569988798-799999999999876099899999877248 Q gi|254780638|r 4 ADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDP-EAKEKFAQISEAYEVLRDPQKRALYDQGGH 71 (384) Q Consensus 4 ~DyY~iLGV~~~As~~eIKkAYrklA~k~HPDkn~~d~-~A~ekFkeI~eAYevLsD~~kR~~YD~~G~ 71 (384) .|||+||||+++||.+|||+|||+|+++||||+|+.+. +++++|++|++||+||+||.+|+.||+||. T Consensus 9 ~dyY~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~I~~Ay~iL~d~~~R~~YD~~g~ 77 (82) T 2ej7_A 9 VDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGS 77 (82) T ss_dssp CCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCC T ss_pred CCHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCC T ss_conf 538998299999699999999999998768576845799999999999999999798999999976799 No 25 >3bvo_A CO-chaperone protein HSCB, mitochondrial precursor; structural genomics medical relevance, protein structure initiative, PSI-2; 3.00A {Homo sapiens} Probab=99.82 E-value=1.6e-20 Score=166.37 Aligned_cols=68 Identities=21% Similarity=0.413 Sum_probs=61.0 Q ss_pred CCCCHHHHCCCCC--CCHHHHHHHHHHHHHHHCCCCCCCCHH-----HHHHHHHHHHHHHHHCCHHHHHHHHHHH Q ss_conf 7452487187998--899999999999999975699887987-----9999999999987609989999987724 Q gi|254780638|r 3 KADFYQVLGIDRN--ATDRQLKTAFRSLAMKYHPDQNRNDPE-----AKEKFAQISEAYEVLRDPQKRALYDQGG 70 (384) Q Consensus 3 ~~DyY~iLGV~~~--As~~eIKkAYrklA~k~HPDkn~~d~~-----A~ekFkeI~eAYevLsD~~kR~~YD~~G 70 (384) .+|||+||||++. ++.+|||+|||+||++||||||+++++ |+++|++|++||+||+||.+|+.||... T Consensus 42 ~~dyy~iLgl~~~~~iD~~eIKkaYr~La~~~HPDk~~~~~~~ek~~a~~~f~~IneAY~~L~Dp~kR~~Yd~~l 116 (207) T 3bvo_A 42 TRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLKL 116 (207) T ss_dssp TCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHH T ss_pred CCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH T ss_conf 888799809898899999999999999999878687876427899989999999999999948999999989987 No 26 >1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 Probab=99.81 E-value=8.2e-21 Score=168.39 Aligned_cols=68 Identities=34% Similarity=0.661 Sum_probs=62.8 Q ss_pred CCCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC------HHHHHHHHHHHHHHHHHCCHHHHHHHHHHH Q ss_conf 74524871879988999999999999999756998879------879999999999987609989999987724 Q gi|254780638|r 3 KADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRND------PEAKEKFAQISEAYEVLRDPQKRALYDQGG 70 (384) Q Consensus 3 ~~DyY~iLGV~~~As~~eIKkAYrklA~k~HPDkn~~d------~~A~ekFkeI~eAYevLsD~~kR~~YD~~G 70 (384) ++|||+||||+++||.+|||+|||+|+++||||||+.+ ++++++|++|++||+||+||++|+.||+.. T Consensus 15 ~kd~Y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~I~~Ay~vL~d~~~R~~YD~~~ 88 (94) T 1wjz_A 15 KKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQR 88 (94) T ss_dssp CSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHS T ss_pred CCCHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCC T ss_conf 35839884999995999999999999998886757775026778899999999999999969999999998625 No 27 >1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1 Probab=99.71 E-value=1.9e-18 Score=151.48 Aligned_cols=64 Identities=27% Similarity=0.455 Sum_probs=58.5 Q ss_pred CCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHH-HHHHHHHHHHHHHHHCCHHHHHHHHHHH Q ss_conf 452487187998899999999999999975699887987-9999999999987609989999987724 Q gi|254780638|r 4 ADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPE-AKEKFAQISEAYEVLRDPQKRALYDQGG 70 (384) Q Consensus 4 ~DyY~iLGV~~~As~~eIKkAYrklA~k~HPDkn~~d~~-A~ekFkeI~eAYevLsD~~kR~~YD~~G 70 (384) +|+|+||||+.+||++|||+|||+||++||||+|+++++ |+++|++|++||++|+ +|..||+.+ T Consensus 16 ~~~y~vLev~~~as~eeIkkAYrklal~~HPDkn~~~~~~a~~~F~~I~~AYe~L~---~~~~~d~~~ 80 (88) T 1iur_A 16 KEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLE---KQAFLDQNA 80 (88) T ss_dssp HHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHH---HHTTCSSSS T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH---HHHHHHCCC T ss_conf 99999929988999999999999999997966589866899999999999999980---288774441 No 28 >2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=99.71 E-value=8.8e-18 Score=146.64 Aligned_cols=101 Identities=29% Similarity=0.642 Sum_probs=92.6 Q ss_pred CCCCCCCCCCCCCHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEE Q ss_conf 22211232221000001355444554431000234322578854210355310112100110012468616665655469 Q gi|254780638|r 124 GADLRYNLEISLEEAFSGKTVQIRFPTAVKCSTCSGSGAKPGTNPMDCNICNGSGRVYTTAQSFFSIERACSTCRGSGQI 203 (384) Q Consensus 124 ~~d~~~~~~islee~~~G~~~~i~~~~~~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~C~~C~G~g~i 203 (384) |+|+.+.|+|+|+|+|.|.++++.+.+...|+.|+|+|++++..+..|+.|+|+|+++. ..++|+++++|+.|+|+|++ T Consensus 1 G~~~~~~l~isleea~~G~~k~i~~~r~~~C~~C~G~G~~~g~~~~~C~~C~G~G~v~~-~~G~~~~~~~C~~C~G~G~i 79 (104) T 2ctt_A 1 GSSGSSGMELTFNQAAKGVNKEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSGMETI-NTGPFVMRSTCRRCGGRGSI 79 (104) T ss_dssp CCCCCCCCCCCCSSCCSSSCTTCCSSCCEECSSSSSSSSCTTCCCEECSSSSSSCEEEE-EETTEEEEEECSSSSSSSEE T ss_pred CCCEEEEEEEEHHHHHCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE-ECCCCCCEEECCHHCCCCEE T ss_conf 99728840689999759936999855234168888878148981741896545858988-11762462477241663408 Q ss_pred EECCCCCCCCCCEECCCCCCCH Q ss_conf 8354120011210001110000 Q gi|254780638|r 204 IPHPCSKCHGQGRVSEEKLLSV 225 (384) Q Consensus 204 ~~~~c~~C~G~g~~~~~~~~~I 225 (384) +.++|+.|+|.|++.+++.++| T Consensus 80 i~~~C~~C~G~G~v~~~kk~~v 101 (104) T 2ctt_A 80 IISPCVVCRGAGQAKQKKRSGP 101 (104) T ss_dssp CSSCCSSSSSCSEECCCCSSCC T ss_pred CCCCCCCCCCCEEEEEEEECCC T ss_conf 7898988889326972157466 No 29 >2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulator/viral protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Probab=99.70 E-value=9.1e-19 Score=153.69 Aligned_cols=64 Identities=23% Similarity=0.436 Sum_probs=59.0 Q ss_pred CCCHHHHCCCCCC--CHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH Q ss_conf 4524871879988--9999999999999997569988798799999999999876099899999877248 Q gi|254780638|r 4 ADFYQVLGIDRNA--TDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDPQKRALYDQGGH 71 (384) Q Consensus 4 ~DyY~iLGV~~~A--s~~eIKkAYrklA~k~HPDkn~~d~~A~ekFkeI~eAYevLsD~~kR~~YD~~G~ 71 (384) ++||+||||+++| +..+||+|||+||++||||+|++ +++|++|++||+||+|+.+|+.||++|. T Consensus 11 ~~ly~lLgl~~~~~~~~~~Ik~ayr~l~~~~HPDk~~~----~e~f~~i~~Ay~~L~d~~~r~~yD~~~~ 76 (174) T 2pf4_E 11 LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMEDGVKYAHQPDFGG 76 (174) T ss_dssp HHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---C----CTTTTHHHHHHHHHHHHHHHHTSCGGGG T ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHHHCCHHHHHHHCCCCC T ss_conf 88999909998988899999999999999979885753----9999999999999699999988734688 No 30 >1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 Probab=99.65 E-value=4.1e-17 Score=141.83 Aligned_cols=62 Identities=11% Similarity=0.299 Sum_probs=57.3 Q ss_pred CCCHHHHCCCCCC--CHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH Q ss_conf 4524871879988--99999999999999975699887987999999999998760998999998772 Q gi|254780638|r 4 ADFYQVLGIDRNA--TDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDPQKRALYDQG 69 (384) Q Consensus 4 ~DyY~iLGV~~~A--s~~eIKkAYrklA~k~HPDkn~~d~~A~ekFkeI~eAYevLsD~~kR~~YD~~ 69 (384) .|||+||||+++| |.+|||+|||+||++||||+++ |+ ++|++|++||++|+|+.+|..||.. T Consensus 11 ~~~y~iLgl~~~~~~~~~~Ik~aYr~l~~~~HPDk~~-d~---e~~~~i~~Ay~~L~d~~~r~r~~~~ 74 (79) T 1faf_A 11 ERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGG-SH---ALMQELNSLWGTFKTEVYNLRMNLG 74 (79) T ss_dssp HHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSC-CH---HHHHHHHHHHHHHHHHHHHHTTCCS T ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC-CH---HHHHHHHHHHHHHCCHHHHHHHCCC T ss_conf 9999991989887899999999999999984987688-79---9999999999997589999986479 No 31 >1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J Probab=99.51 E-value=1.2e-15 Score=131.40 Aligned_cols=63 Identities=24% Similarity=0.491 Sum_probs=58.6 Q ss_pred CCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCH---HHHHHHHHHHHHHHHHCCHHHHHHH Q ss_conf 45248718799889999999999999997569988798---7999999999998760998999998 Q gi|254780638|r 4 ADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDP---EAKEKFAQISEAYEVLRDPQKRALY 66 (384) Q Consensus 4 ~DyY~iLGV~~~As~~eIKkAYrklA~k~HPDkn~~d~---~A~ekFkeI~eAYevLsD~~kR~~Y 66 (384) .++|++|||+..+|.++||+|||+|+++|||||+.+++ .|++.|++|++||++|+|+.+|++| T Consensus 117 ~~~~~~l~~~~l~~~~~VK~aYrk~~~~~HPDk~~~~~~~~~a~~~F~~l~~Ay~~l~~~~~R~~Y 182 (182) T 1n4c_A 117 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY 182 (182) T ss_dssp CCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC T ss_pred CCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHCC T ss_conf 778855675666899999999999999869665899578999999999999999997899777219 No 32 >2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Probab=99.49 E-value=5.1e-15 Score=126.81 Aligned_cols=59 Identities=27% Similarity=0.445 Sum_probs=51.9 Q ss_pred CCCCCCHHHHCCCCCC-CHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHH Q ss_conf 9874524871879988-99999999999999975699887987999999999998760998999 Q gi|254780638|r 1 MKKADFYQVLGIDRNA-TDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDPQKR 63 (384) Q Consensus 1 ~~~~DyY~iLGV~~~A-s~~eIKkAYrklA~k~HPDkn~~d~~A~ekFkeI~eAYevLsD~~kR 63 (384) |+..+.|+||||+++| |.+|||+|||+||++||||+|+ ++ +.|++|++||+||.+...| T Consensus 11 Mt~~eA~~iLgl~~~a~t~~~Ik~ayr~la~~~HPDk~g-s~---~~~~~i~~Aye~L~~~~~r 70 (71) T 2guz_A 11 MNSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGG-SP---FLATKINEAKDFLEKRGIS 70 (71) T ss_dssp CCHHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTC-CH---HHHHHHHHHHHHHHHHCCC T ss_pred CCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC-CH---HHHHHHHHHHHHHCCCCCC T ss_conf 699999998299999789999999999999987989898-99---9999999999998161438 No 33 >2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphorylation; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A Probab=99.44 E-value=1.1e-14 Score=124.54 Aligned_cols=56 Identities=21% Similarity=0.416 Sum_probs=51.8 Q ss_pred CCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHH---HHHHHHHHHHHHHHHCC Q ss_conf 452487187998899999999999999975699887987---99999999999876099 Q gi|254780638|r 4 ADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPE---AKEKFAQISEAYEVLRD 59 (384) Q Consensus 4 ~DyY~iLGV~~~As~~eIKkAYrklA~k~HPDkn~~d~~---A~ekFkeI~eAYevLsD 59 (384) .++|++|||+..||.+|||+|||+++++||||+|++++. |+++|+.|++||++|++ T Consensus 33 ~~~~~~Lg~~~~~t~~eIKkaYrk~~~~~HPDk~~~~~~~~~A~~~f~~i~~Aye~~~~ 91 (92) T 2qwo_B 33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91 (92) T ss_dssp CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH T ss_pred CCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC T ss_conf 67883578666699999999999999987977689977899999999999999999855 No 34 >3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana} Probab=99.44 E-value=1.7e-14 Score=123.03 Aligned_cols=58 Identities=12% Similarity=0.272 Sum_probs=51.5 Q ss_pred CCCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC---H----HHHHHHHHHHHHHHHHCCH Q ss_conf 74524871879988999999999999999756998879---8----7999999999998760998 Q gi|254780638|r 3 KADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRND---P----EAKEKFAQISEAYEVLRDP 60 (384) Q Consensus 3 ~~DyY~iLGV~~~As~~eIKkAYrklA~k~HPDkn~~d---~----~A~ekFkeI~eAYevLsD~ 60 (384) ..+.|++|||+..||.+|||+|||+||++|||||+++. + .|+++|++|++||+.|+++ T Consensus 39 ~~~~~~~Lgl~~~~~~~eIKkaYrkl~~~~HPDk~~~~~~~~e~~~~A~~~F~~I~eAYe~~~~~ 103 (106) T 3ag7_A 39 SGSGWKPVPLMDMIEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTL 103 (106) T ss_dssp TTSCCCCCCGGGSCSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTT T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 74558207876558999999999999999895768898622788999999999999999998634 No 35 >1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1 Probab=99.24 E-value=6.3e-12 Score=104.62 Aligned_cols=78 Identities=51% Similarity=1.139 Sum_probs=71.1 Q ss_pred CCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEECCCCCCCCCCEECC Q ss_conf 3554445544310002343225788542103553101121001100124686166656554698354120011210001 Q gi|254780638|r 141 GKTVQIRFPTAVKCSTCSGSGAKPGTNPMDCNICNGSGRVYTTAQSFFSIERACSTCRGSGQIIPHPCSKCHGQGRVSE 219 (384) Q Consensus 141 G~~~~i~~~~~~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~C~~C~G~g~i~~~~c~~C~G~g~~~~ 219 (384) |.+++|.+.+.+.|+.|+|+|++++..+..|+.|+|+|++.. ..++++++++|+.|+|+|+++.++|..|+|+|++.+ T Consensus 1 G~~k~i~i~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~v~~-~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~k 78 (79) T 1exk_A 1 GVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQM-RQGFFAVQQTCPHCQGRGTLIKDPCNKCHGHGRVER 78 (79) T ss_dssp CTTTSCCCCCEEECGGGTTTSBCSSSCCEECTTTTTSSEEEE-EETTEEEEEECTTTTTSSEECSSBCGGGTTSSEEEC T ss_pred CCEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEEEE-ECCCCEEEEECCCCCCEEEECCCCCCCCCCCEEECC T ss_conf 956999763557888997741889998828988788127978-458715787995477524678998999999638717 No 36 >2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Probab=99.15 E-value=2.4e-11 Score=100.42 Aligned_cols=61 Identities=13% Similarity=0.111 Sum_probs=53.6 Q ss_pred CCCCCCHHHHCCCC---CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHH Q ss_conf 98745248718799---889999999999999997569988798799999999999876099899999 Q gi|254780638|r 1 MKKADFYQVLGIDR---NATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDPQKRAL 65 (384) Q Consensus 1 ~~~~DyY~iLGV~~---~As~~eIKkAYrklA~k~HPDkn~~d~~A~ekFkeI~eAYevLsD~~kR~~ 65 (384) |+..+.|+||||++ +||.+||++|||+|++++|||+. |++ ..|++|++||++|.++.+|+. T Consensus 1 Mt~~EA~~ILgl~~~~~~~~~~~I~~ayr~L~~~~hPD~G-Gs~---yl~~kI~~A~e~L~~~~~~~e 64 (65) T 2guz_B 1 MTLDESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKG-GSF---YLQSKVYRAAERLKWELAQRE 64 (65) T ss_dssp CCHHHHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGT-CCH---HHHHHHHHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC-CCH---HHHHHHHHHHHHHHHHHHHHC T ss_conf 9899999996898665538999999999999996498779-999---999999999999989998742 No 37 >2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=98.23 E-value=2.5e-06 Score=64.43 Aligned_cols=54 Identities=28% Similarity=0.549 Sum_probs=46.9 Q ss_pred CCCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 7452487187998899999999999999975699887987999999999998760 Q gi|254780638|r 3 KADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVL 57 (384) Q Consensus 3 ~~DyY~iLGV~~~As~~eIKkAYrklA~k~HPDkn~~d~~A~ekFkeI~eAYevL 57 (384) -+|-|+.|||.+.||.+|+-+||||||.-.||||-. -|.+|.-||.+-+|-..| T Consensus 26 skdswdmlgvkpgasrdevnkayrklavllhpdkcv-apgsedafkavvnartal 79 (90) T 2ys8_A 26 SKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCV-APGSEDAFKAVVNARTAL 79 (90) T ss_dssp CSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCC-CTTHHHHHHHHHHHHHHH T ss_pred CCCCHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCC-CCCCHHHHHHHHHHHHHH T ss_conf 541188747788856889999999888750664345-889588999999999999 No 38 >1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1 Probab=98.16 E-value=2e-06 Score=65.05 Aligned_cols=46 Identities=28% Similarity=0.422 Sum_probs=33.5 Q ss_pred CCCCCCHHHHHC--CCCCCCEEECCCCCCCCCCCCCCCEEEEEECCCC Q ss_conf 111000001100--1148501203677656788416641575310346 Q gi|254780638|r 219 EEKLLSVNVPPG--VDDGTRIRLSGEGGAGVYGGAPGDLYIFISVKKH 264 (384) Q Consensus 219 ~~~~~~I~Ip~G--~~~G~~i~~~g~G~~~~~~~~~GDl~i~i~~~~h 264 (384) ..+.+.|.|||| +..|+.++++|+|=.......+|||+|.+.++-- T Consensus 187 dG~~~~i~i~~g~~~~~g~~~~i~g~G~p~~~~~~~GdL~V~~~v~~P 234 (248) T 1nlt_A 187 SGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIKDP 234 (248) T ss_dssp SSCEEECCBCTTTTCSTTCEEEETTCSCBCSSSCSBCCEEEEEEEECC T ss_pred CCCEEEECCCCCCEECCCEEEEEECCCCCCCCCCCCCCEEEEEEEECC T ss_conf 898677505899988999899993899887898995578999999949 No 39 >2qld_A DNAJ homolog subfamily B member 1; primarily beta sheets, chaperone; 2.70A {Homo sapiens} Probab=98.08 E-value=1.1e-05 Score=59.77 Aligned_cols=43 Identities=26% Similarity=0.245 Sum_probs=31.2 Q ss_pred CCCCHHHHHCCCCCCCEEECCCCCCCC-CCCCCCCEEEEEECCC Q ss_conf 100000110011485012036776567-8841664157531034 Q gi|254780638|r 221 KLLSVNVPPGVDDGTRIRLSGEGGAGV-YGGAPGDLYIFISVKK 263 (384) Q Consensus 221 ~~~~I~Ip~G~~~G~~i~~~g~G~~~~-~~~~~GDl~i~i~~~~ 263 (384) +.++|.||+++.+|+.++++|+|=... .....|||+|.+++.- T Consensus 122 ~~v~i~i~~~~~~g~~~~i~g~G~p~~~~~~~~GdL~I~~~v~~ 165 (183) T 2qld_A 122 RTIPVVFKDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIF 165 (183) T ss_dssp CEEEEEECSCCCTTCEEEETTCSCBCSSCTTSBCCEEEEEEEEC T ss_pred CEEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEEEE T ss_conf 87998738961278699967846870799898688999999990 No 40 >2k3v_A Tetraheme cytochrome C-type; multihaem cytochromes, redox proteins, electron transport, iron, metal-binding, periplasm, transport; HET: HEM; NMR {Shewanella frigidimarina} Probab=98.08 E-value=4.2e-07 Score=69.96 Aligned_cols=67 Identities=19% Similarity=0.455 Sum_probs=54.8 Q ss_pred EECCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCEE---EEEEEECCCCCCCCEEEECCCCCCCCCCEECC Q ss_conf 0002343225788542---1035531011210011001---24686166656554698354120011210001 Q gi|254780638|r 153 KCSTCSGSGAKPGTNP---MDCNICNGSGRVYTTAQSF---FSIERACSTCRGSGQIIPHPCSKCHGQGRVSE 219 (384) Q Consensus 153 ~C~~C~G~g~~~~~~~---~~C~~C~G~G~~~~~~~~~---~~~~~~C~~C~G~g~i~~~~c~~C~G~g~~~~ 219 (384) .|..|+|+|++++..+ ..|+.|+|+|.+....+.. +...++|+.|+|+|++++..|..|+|.|++.+ T Consensus 14 ~C~~Chg~G~~~~~~~~~~~tC~~ChG~g~~~~~~~~~~~~~~~c~~Ch~chg~g~~~~~~C~~Chg~Gr~~k 86 (86) T 2k3v_A 14 GCENCHADGEPSKDGAYEFEQCQSCHGSLAEMDDNHKPHDGLLMCADCHAPHEAKVGEKPTCDTCHDDGRTAK 86 (86) T ss_dssp CGGGSCSSSCCCSSSHHHHHHTSSSSCCGGGSCTTHHHHSSSSCHHHHSCTTTCBSSCCCCGGGTCCSCCCCC T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEECC T ss_conf 8899979688899878758738889995417876036776255634588887887707885432589882883 No 41 >2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II} Probab=97.95 E-value=1.4e-05 Score=59.00 Aligned_cols=43 Identities=23% Similarity=0.221 Sum_probs=31.3 Q ss_pred CCCCHHHHHCCCCCCCEEECCCCCCCCC-CCCCCCEEEEEECCC Q ss_conf 1000001100114850120367765678-841664157531034 Q gi|254780638|r 221 KLLSVNVPPGVDDGTRIRLSGEGGAGVY-GGAPGDLYIFISVKK 263 (384) Q Consensus 221 ~~~~I~Ip~G~~~G~~i~~~g~G~~~~~-~~~~GDl~i~i~~~~ 263 (384) +.+.|+||+++..|+.++++|+|=.-.. ....|||+|.+++.- T Consensus 120 ~~i~i~i~~~~~~~~~~~i~g~G~P~~~~~~~~GDL~I~~~v~~ 163 (180) T 2q2g_A 120 RNLQIPIKEIVNPKTRKIVPNEGMPIKNQPGQKGDLILEFDICF 163 (180) T ss_dssp CEEEEEECSCCCTTCEEEETTCSCBCSSSTTCBCCEEEEEEEEC T ss_pred CCEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEEEE T ss_conf 53066229825898599993998843898999748999999991 No 42 >1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A Probab=97.91 E-value=1.8e-05 Score=58.20 Aligned_cols=44 Identities=16% Similarity=0.172 Sum_probs=35.2 Q ss_pred CCCCCHHHHHCCCCCCCEEECCCCCCCC-CCCCCCCEEEEEECCC Q ss_conf 1100000110011485012036776567-8841664157531034 Q gi|254780638|r 220 EKLLSVNVPPGVDDGTRIRLSGEGGAGV-YGGAPGDLYIFISVKK 263 (384) Q Consensus 220 ~~~~~I~Ip~G~~~G~~i~~~g~G~~~~-~~~~~GDl~i~i~~~~ 263 (384) .+.+.|.||+++..|+.++++|+|=... ....+|||+|.+.++- T Consensus 113 G~~i~i~i~~~~~~g~~~~i~g~Gmp~~~~~~~~GdL~I~~~V~~ 157 (170) T 1c3g_A 113 GRTLPLSRVQPVQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDY 157 (170) T ss_dssp SCEEEEEESSCCCTTCEEECTTCSCBCSSCTTSBCCEEEEECCBC T ss_pred CCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEEEC T ss_conf 970323457876689789988877761899899688999999992 No 43 >3i38_A Putative chaperone DNAJ; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp} Probab=97.75 E-value=1.2e-05 Score=59.51 Aligned_cols=73 Identities=27% Similarity=0.433 Sum_probs=56.7 Q ss_pred CCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCC Q ss_conf 12222211232221000001355444554431000234322578854210355310112100110012468616665655 Q gi|254780638|r 121 GEAGADLRYNLEISLEEAFSGKTVQIRFPTAVKCSTCSGSGAKPGTNPMDCNICNGSGRVYTTAQSFFSIERACSTCRGS 200 (384) Q Consensus 121 ~~~~~d~~~~~~islee~~~G~~~~i~~~~~~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~C~~C~G~ 200 (384) ...|.|+...+.|+|.++..|++..+..- T Consensus 8 ~r~G~dL~~~~~I~~~~AllG~~v~v~tl--------------------------------------------------- 36 (109) T 3i38_A 8 DIVGHNLEIVLPLAPWEAALGAKVTVPTL--------------------------------------------------- 36 (109) T ss_dssp EEETTEEEEEEEECHHHHHHCEEEEECCS--------------------------------------------------- T ss_pred EECCCEEEEEEECCHHHHHCCCEEEEECC--------------------------------------------------- T ss_conf 68089899998748999858987998279--------------------------------------------------- Q ss_pred CEEEECCCCCCCCCCEECCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCCCCCEEEEEECCCCC Q ss_conf 46983541200112100011100000110011485012036776567884166415753103468 Q gi|254780638|r 201 GQIIPHPCSKCHGQGRVSEEKLLSVNVPPGVDDGTRIRLSGEGGAGVYGGAPGDLYIFISVKKHQ 265 (384) Q Consensus 201 g~i~~~~c~~C~G~g~~~~~~~~~I~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~i~i~~~~h~ 265 (384) . ..++|.||+|+.+|++++++|+|=. .++.+|||+|+|.+.--. T Consensus 37 ------------------d-g~v~i~Ip~gt~~g~~lri~g~G~p--~~~~~GDl~v~~~v~~P~ 80 (109) T 3i38_A 37 ------------------K-ESILLTVPPGSQAGQRLRIKGKGLV--SKTHTGDLFAVIKIVMPT 80 (109) T ss_dssp ------------------S-SCEEEEECTTCCTTCEEEETTCSCB--CSSCBCCEEEEEEECCCS T ss_pred ------------------C-CCEEEEECCCCCCCCEEEEECCCCC--CCCCCCCEEEEEEEECCC T ss_conf ------------------9-8587867897169979998088988--889985789999999299 No 44 >3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein structure initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Probab=97.52 E-value=4.1e-05 Score=55.67 Aligned_cols=42 Identities=31% Similarity=0.621 Sum_probs=35.4 Q ss_pred CCCCHHHHHCCCCCCCEEECCCCCCCCCCCCCCCEEEEEECC-CC Q ss_conf 100000110011485012036776567884166415753103-46 Q gi|254780638|r 221 KLLSVNVPPGVDDGTRIRLSGEGGAGVYGGAPGDLYIFISVK-KH 264 (384) Q Consensus 221 ~~~~I~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~i~i~~~-~h 264 (384) ..+.|.||+|+.+|++|+++|+|-. ..+.+|||+|.|+++ |. T Consensus 258 g~~~v~ip~g~~~G~~~ri~GkG~p--~~~~rGDL~V~~~V~~P~ 300 (329) T 3lz8_A 258 ESILLTVPPGSQAGQRLRIKGKGLV--SKTHTGDLFAVIKIVMPT 300 (329) T ss_dssp SCEEEEECTTCCTTCEEEETTCSCB--CSSCBCCEEEEEEECCCS T ss_pred CCEEEEECCCCCCCCEEEECCCCCC--CCCCCCCEEEEEEEECCC T ss_conf 8789987989899968998898989--999988989999998699 No 45 >1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae} Probab=97.48 E-value=3.6e-05 Score=56.08 Aligned_cols=73 Identities=30% Similarity=0.441 Sum_probs=57.7 Q ss_pred CCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCC Q ss_conf 22222112322210000013554445544310002343225788542103553101121001100124686166656554 Q gi|254780638|r 122 EAGADLRYNLEISLEEAFSGKTVQIRFPTAVKCSTCSGSGAKPGTNPMDCNICNGSGRVYTTAQSFFSIERACSTCRGSG 201 (384) Q Consensus 122 ~~~~d~~~~~~islee~~~G~~~~i~~~~~~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~C~~C~G~g 201 (384) +.|.|+...+.|+|.+++.|++..+..- T Consensus 4 R~G~DL~~~~~Isl~eal~G~~~~I~~l---------------------------------------------------- 31 (121) T 1xao_A 4 RDGDDLVYEAEIDLLTAIAGGEFALEHV---------------------------------------------------- 31 (121) T ss_dssp EETTEEEEEEEEEHHHHHHCEEEEEECT---------------------------------------------------- T ss_pred EECCEEEEEEEECHHHHHCCCEEEEECC---------------------------------------------------- T ss_conf 9698999998818999837987998667---------------------------------------------------- Q ss_pred EEEECCCCCCCCCCEECCCCCCCHHHHHC--CCCCCCEEECCCCCCCCCCCCCCCEEEEEECCC Q ss_conf 69835412001121000111000001100--114850120367765678841664157531034 Q gi|254780638|r 202 QIIPHPCSKCHGQGRVSEEKLLSVNVPPG--VDDGTRIRLSGEGGAGVYGGAPGDLYIFISVKK 263 (384) Q Consensus 202 ~i~~~~c~~C~G~g~~~~~~~~~I~Ip~G--~~~G~~i~~~g~G~~~~~~~~~GDl~i~i~~~~ 263 (384) ..+.+.|.||+| +..|+.++++|+|=....+..+|||+|.+++.- T Consensus 32 -----------------dG~~l~i~i~~g~~~~~g~~~~i~g~GmP~~~~~~~GdL~I~~~v~~ 78 (121) T 1xao_A 32 -----------------SGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIKF 78 (121) T ss_dssp -----------------TSCEEEEEECTTSCCCTTCEEEETTCSCC------CCCEEEEEEEEC T ss_pred -----------------CCCEEEEEECCCCEECCCCEEEECCCCCCCCCCCCCCCEEEEEEEEC T ss_conf -----------------88758986289978648976898198988789799567899999984 No 46 >2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=95.27 E-value=0.01 Score=38.52 Aligned_cols=45 Identities=33% Similarity=0.750 Sum_probs=20.5 Q ss_pred CEECCCCCCCCCC-----CCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEE Q ss_conf 1000234322578-----85421035531011210011001246861666565546983 Q gi|254780638|r 152 VKCSTCSGSGAKP-----GTNPMDCNICNGSGRVYTTAQSFFSIERACSTCRGSGQIIP 205 (384) Q Consensus 152 ~~C~~C~G~g~~~-----~~~~~~C~~C~G~G~~~~~~~~~~~~~~~C~~C~G~g~i~~ 205 (384) ..|+.|+|.|... .....+|+.|+|+|.+. ..+|..|+|.|.+.. T Consensus 46 ~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~ii---------~~~C~~C~G~G~v~~ 95 (104) T 2ctt_A 46 QHCHYCGGSGMETINTGPFVMRSTCRRCGGRGSII---------ISPCVVCRGAGQAKQ 95 (104) T ss_dssp EECSSSSSSCEEEEEETTEEEEEECSSSSSSSEEC---------SSCCSSSSSCSEECC T ss_pred CCCCCCCCEEEEEEECCCCCCEEECCHHCCCCEEC---------CCCCCCCCCCEEEEE T ss_conf 41896545858988117624624772416634087---------898988889326972 No 47 >1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1 Probab=93.22 E-value=0.03 Score=35.19 Aligned_cols=26 Identities=31% Similarity=0.985 Sum_probs=11.2 Q ss_pred CCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEE Q ss_conf 10355310112100110012468616665655469 Q gi|254780638|r 169 MDCNICNGSGRVYTTAQSFFSIERACSTCRGSGQI 203 (384) Q Consensus 169 ~~C~~C~G~G~~~~~~~~~~~~~~~C~~C~G~g~i 203 (384) ..|+.|+|+|.+. ..+|..|+|.|+| T Consensus 51 ~~C~~C~G~G~~i---------~~~C~~C~G~G~v 76 (79) T 1exk_A 51 QTCPHCQGRGTLI---------KDPCNKCHGHGRV 76 (79) T ss_dssp EECTTTTTSSEEC---------SSBCGGGTTSSEE T ss_pred EECCCCCCEEEEC---------CCCCCCCCCCEEE T ss_conf 7995477524678---------9989999996387 No 48 >2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibitory protein; transcription regulation, Trp RNA-binding attenuation protein; 2.8A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C* Probab=90.21 E-value=0.071 Score=32.46 Aligned_cols=27 Identities=41% Similarity=1.010 Sum_probs=14.6 Q ss_pred EEECCCCCCCCEEEECCCCCCCCCCEE Q ss_conf 861666565546983541200112100 Q gi|254780638|r 191 ERACSTCRGSGQIIPHPCSKCHGQGRV 217 (384) Q Consensus 191 ~~~C~~C~G~g~i~~~~c~~C~G~g~~ 217 (384) +.+|+.|.|.|.+-..+|+.|.|.|++ T Consensus 9 e~tcp~c~~~g~~e~~pcp~c~~kgvi 35 (53) T 2bx9_A 9 EVACPKCERAGEIEGTPCPACSGKGVI 35 (53) T ss_dssp EEECTTTTTSSEETTEECTTTTTSSEE T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEE T ss_conf 002867667576379848644575369 No 49 >3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) sequence RTPA; anti-trap, tryptophan RNA-binding attenuation protein; 2.06A {Bacillus licheniformis} PDB: 3ld0_A Probab=90.05 E-value=0.075 Score=32.30 Aligned_cols=27 Identities=48% Similarity=1.181 Sum_probs=14.1 Q ss_pred EEECCCCCCCCEEEECCCCCCCCCCEE Q ss_conf 861666565546983541200112100 Q gi|254780638|r 191 ERACSTCRGSGQIIPHPCSKCHGQGRV 217 (384) Q Consensus 191 ~~~C~~C~G~g~i~~~~c~~C~G~g~~ 217 (384) +.+|+.|.|.|..-..+|+.|.|.|++ T Consensus 9 e~tcp~c~~~g~~e~~pcp~c~~kgvi 35 (53) T 3lcz_A 9 ETTCPNCNGSGREEPEPCPKCLGKGVI 35 (53) T ss_dssp EEECTTTTTSCEETTEECTTTTTSSEE T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEE T ss_conf 002867667576279838634575369 No 50 >1m1q_A Small tetraheme cytochrome C; atomic structure of oxidized tetraheme cytochrome C, electron transport; HET: HEM; 0.97A {Shewanella oneidensis mr-1} SCOP: a.138.1.3 PDB: 1m1p_A* 1m1r_A* Probab=89.03 E-value=0.034 Score=34.75 Aligned_cols=68 Identities=21% Similarity=0.498 Sum_probs=44.5 Q ss_pred EECCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCEEEEEEEECCCCC---CCCEEEECCCCCCCCCCEECCC Q ss_conf 000234322578854---2103553101121001100124686166656---5546983541200112100011 Q gi|254780638|r 153 KCSTCSGSGAKPGTN---PMDCNICNGSGRVYTTAQSFFSIERACSTCR---GSGQIIPHPCSKCHGQGRVSEE 220 (384) Q Consensus 153 ~C~~C~G~g~~~~~~---~~~C~~C~G~G~~~~~~~~~~~~~~~C~~C~---G~g~i~~~~c~~C~G~g~~~~~ 220 (384) .|.+|.+.+...... +..|..|++.+...............|..|. +.++.+...|..|++.++..+. T Consensus 14 ~C~~CH~~~~~~~~~~~~~~~C~~CH~~~~~~~~~~~~~~~~~~C~~CH~~H~~~~~~~~~C~~CH~d~r~~~~ 87 (91) T 1m1q_A 14 GCESCHKDGTPSADGAFEFAQCQSCHGKLSEMDAVHKPHDGNLVCADCHAVHDMNVGQKPTCESCHDDGRTSAS 87 (91) T ss_dssp CGGGTSGGGCCCSSSHHHHHHHHHHHCCGGGSCTTTGGGTTTCCGGGTCCTTTSBTTCCCCSTTTCSSCCCHHH T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCHHH T ss_conf 65554888886666787787181249971322103456777530144766556787678841121467760114 No 51 >2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibitory protein; transcription regulation, Trp RNA-binding attenuation protein; 2.8A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C* Probab=85.38 E-value=0.34 Score=27.61 Aligned_cols=12 Identities=42% Similarity=1.185 Sum_probs=7.4 Q ss_pred ECCCCCCCCEEE Q ss_conf 166656554698 Q gi|254780638|r 193 ACSTCRGSGQII 204 (384) Q Consensus 193 ~C~~C~G~g~i~ 204 (384) +|+.|.|+|.|. T Consensus 25 pcp~c~~kgvil 36 (53) T 2bx9_A 25 PCPACSGKGVIL 36 (53) T ss_dssp ECTTTTTSSEEE T ss_pred CCCCCCCCEEEE T ss_conf 486445753699 No 52 >3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) sequence RTPA; anti-trap, tryptophan RNA-binding attenuation protein; 2.06A {Bacillus licheniformis} PDB: 3ld0_A Probab=85.20 E-value=0.35 Score=27.50 Aligned_cols=13 Identities=38% Similarity=1.032 Sum_probs=8.0 Q ss_pred ECCCCCCCCEEEE Q ss_conf 1666565546983 Q gi|254780638|r 193 ACSTCRGSGQIIP 205 (384) Q Consensus 193 ~C~~C~G~g~i~~ 205 (384) +|+.|.|+|.|.. T Consensus 25 pcp~c~~kgvilt 37 (53) T 3lcz_A 25 PCPKCLGKGVILT 37 (53) T ss_dssp ECTTTTTSSEEEC T ss_pred CCCCCCCCEEEEE T ss_conf 3863457536997 No 53 >2k3v_A Tetraheme cytochrome C-type; multihaem cytochromes, redox proteins, electron transport, iron, metal-binding, periplasm, transport; HET: HEM; NMR {Shewanella frigidimarina} Probab=83.82 E-value=0.15 Score=30.17 Aligned_cols=42 Identities=26% Similarity=0.524 Sum_probs=20.6 Q ss_pred EECCCCCCCCCCC---------CCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEE Q ss_conf 0002343225788---------54210355310112100110012468616665655469 Q gi|254780638|r 153 KCSTCSGSGAKPG---------TNPMDCNICNGSGRVYTTAQSFFSIERACSTCRGSGQI 203 (384) Q Consensus 153 ~C~~C~G~g~~~~---------~~~~~C~~C~G~G~~~~~~~~~~~~~~~C~~C~G~g~i 203 (384) .|..|+|.|.... ..-..|+.|+|.|++ +...|..|+|.|++ T Consensus 34 tC~~ChG~g~~~~~~~~~~~~~~~c~~Ch~chg~g~~---------~~~~C~~Chg~Gr~ 84 (86) T 2k3v_A 34 QCQSCHGSLAEMDDNHKPHDGLLMCADCHAPHEAKVG---------EKPTCDTCHDDGRT 84 (86) T ss_dssp HTSSSSCCGGGSCTTHHHHSSSSCHHHHSCTTTCBSS---------CCCCGGGTCCSCCC T ss_pred CCCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCCCC---------CCCCCCCCCCCCEE T ss_conf 3888999541787603677625563458888788770---------78854325898828 No 54 >2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=77.99 E-value=0.48 Score=26.47 Aligned_cols=33 Identities=18% Similarity=0.293 Sum_probs=27.7 Q ss_pred CCHHHH-CCCCCCCHHHHHHHHHHHHHHHCCCCC Q ss_conf 524871-879988999999999999999756998 Q gi|254780638|r 5 DFYQVL-GIDRNATDRQLKTAFRSLAMKYHPDQN 37 (384) Q Consensus 5 DyY~iL-GV~~~As~~eIKkAYrklA~k~HPDkn 37 (384) ..+-+| .|+++||-.|||+.++++-.+|+|.|- T Consensus 22 k~l~~ld~V~~~aTV~dlK~~~~k~~pk~yp~RQ 55 (88) T 2dzj_A 22 EKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQ 55 (88) T ss_dssp CCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTC T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCEE T ss_conf 7789984579988099999999987789983316 No 55 >1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17 Probab=66.64 E-value=4.8 Score=19.29 Aligned_cols=45 Identities=29% Similarity=0.269 Sum_probs=33.4 Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH Q ss_conf 98899999999999999975699887987999999999998760998999998772 Q gi|254780638|r 14 RNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDPQKRALYDQG 69 (384) Q Consensus 14 ~~As~~eIKkAYrklA~k~HPDkn~~d~~A~ekFkeI~eAYevLsD~~kR~~YD~~ 69 (384) ++.|...+-+.|-+|-.. .||-.- .|++|.+.|.=.+||++||-. T Consensus 8 ~ekSL~~lt~kFi~l~~~-~~~~~i----------~l~~~a~~l~v~~kRRlYDI~ 52 (76) T 1cf7_A 8 HEKSLGLLTTKFVSLLQE-AKDGVL----------DLKLAADTLAVRQKRRIYDIT 52 (76) T ss_dssp TTTCHHHHHHHHHHHHHH-SSTTEE----------EHHHHHHHTTTCCTHHHHHHH T ss_pred HHCCHHHHHHHHHHHHHH-CCCCCE----------EHHHHHHHHCCCCHHHHHHHH T ss_conf 240199999999999846-899848----------099999996685214588999 No 56 >3epv_A CNRX, nickel and cobalt resistance protein CNRR; all alpha helix, coiled coil, periplasm, plasmid, metal binding protein; HET: MSE; 1.74A {Ralstonia metallidurans CH34} Probab=52.37 E-value=11 Score=16.74 Aligned_cols=32 Identities=28% Similarity=0.421 Sum_probs=20.5 Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC Q ss_conf 999999999876099899999877248765314 Q gi|254780638|r 45 EKFAQISEAYEVLRDPQKRALYDQGGHEALEYG 77 (384) Q Consensus 45 ekFkeI~eAYevLsD~~kR~~YD~~G~~~~~~~ 77 (384) .++....+.|+||+ |+.|..|+..-..+...| T Consensus 76 ~~~~~~~~i~~vLT-peQr~k~~~~~~~~~~r~ 107 (109) T 3epv_A 76 ATLVHVFEMRAGLK-PEHRPAYDRVLIDALRRG 107 (109) T ss_dssp HHHHHHHHHHHTSC-GGGHHHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHCC-HHHHHHHHHHHHHHHCCC T ss_conf 99999999987089-999999999999986145 No 57 >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* Probab=46.90 E-value=10 Score=17.03 Aligned_cols=34 Identities=15% Similarity=0.097 Sum_probs=16.9 Q ss_pred ECCEECCCCCCCCCCCEEEEEEEECCCCCCHHHHHHH Q ss_conf 8881020068988652799999992989999999999 Q gi|254780638|r 317 LKGKGMPVINSGRKGDLYVQVQVETPQKLNKRQRELL 353 (384) Q Consensus 317 i~g~G~p~~~~~~rGdl~i~~~v~~P~~Ls~~qk~ll 353 (384) ..+.|=|.=++.++---++-+.|..|+ ++-+++| T Consensus 335 ~~~~GC~~C~~~G~~GR~~v~Evl~~~---~~l~~~i 368 (418) T 1p9r_A 335 YRATGCPKCNHKGYRGRTGIHELLLVD---DALQELI 368 (418) T ss_dssp EECCCCSSSCSSSEEEEEEEEEEEECC---HHHHHHH T ss_pred EECCCCCCCCCCCCCCCEEEEEEEECC---HHHHHHH T ss_conf 848986424899888704999998389---9999999 No 58 >1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* Probab=45.30 E-value=4.5 Score=19.54 Aligned_cols=16 Identities=19% Similarity=0.339 Sum_probs=5.8 Q ss_pred HHHHHHHHHHHCCHHH Q ss_conf 9999999876099899 Q gi|254780638|r 47 FAQISEAYEVLRDPQK 62 (384) Q Consensus 47 FkeI~eAYevLsD~~k 62 (384) |+++-.+=.-+.|++- T Consensus 193 ~~d~~~~g~~~~d~~l 208 (571) T 1y0p_A 193 FEDTMKGGQNINDPAL 208 (571) T ss_dssp HHHHHHHTTTCSCHHH T ss_pred HHHHHHHCCCCCCHHH T ss_conf 9999986089887999 No 59 >1gyx_A YDCE, B1461, hypothetical protein YDCE; tautomerase, isomerase, complete proteo; HET: EPE; 1.35A {Escherichia coli} SCOP: d.80.1.1 PDB: 1gyj_A* 1gyy_A* Probab=42.76 E-value=15 Score=15.73 Aligned_cols=23 Identities=17% Similarity=0.556 Sum_probs=13.5 Q ss_pred EEEEEECCCCCCHHHHHHH-HHHHH Q ss_conf 9999992989999999999-99998 Q gi|254780638|r 335 VQVQVETPQKLNKRQRELL-EEFEQ 358 (384) Q Consensus 335 i~~~v~~P~~Ls~~qk~ll-~~l~~ 358 (384) |.+++ ||..||.+||+.| +++-+ T Consensus 3 I~Ik~-~~g~lt~EQK~~L~~~iT~ 26 (76) T 1gyx_A 3 IDIKC-FPRELDEQQKAALAADITD 26 (76) T ss_dssp EEEEE-SCCCCCHHHHHHHHHHHHH T ss_pred EEEEE-CCCCCCHHHHHHHHHHHHH T ss_conf 99996-7999999999999999999 No 60 >2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 Probab=41.61 E-value=16 Score=15.61 Aligned_cols=60 Identities=15% Similarity=0.231 Sum_probs=41.9 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH---HHHHHHHCCH-HHHHHHHHHHHH Q ss_conf 8799889999999999999997569988798799999999---9998760998-999998772487 Q gi|254780638|r 11 GIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQI---SEAYEVLRDP-QKRALYDQGGHE 72 (384) Q Consensus 11 GV~~~As~~eIKkAYrklA~k~HPDkn~~d~~A~ekFkeI---~eAYevLsD~-~kR~~YD~~G~~ 72 (384) |-+..+.....+.||+.|-..++|+.++... .+.++.. ...|..|+++ +++..|+.|-.. T Consensus 1 ~~~~~~~lrk~~~aF~~mLke~~~~I~~~t~--W~~v~~~~~~Dpry~av~~e~eRe~lF~eYi~~ 64 (77) T 2cqn_A 1 GSSGSSGMKRKESAFKSMLKQAAPPIELDAV--WEDIRERFVKEPAFEDITLESERKRIFKDFMHV 64 (77) T ss_dssp CCSCCCSHHHHHHHHHHHHHTCSSCCCTTCC--HHHHHHHHTTSHHHHTCCCHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--HHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHH T ss_conf 9227789999999999999983899999994--999999874788877548878999999999999 No 61 >1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus} Probab=38.71 E-value=17 Score=15.30 Aligned_cols=44 Identities=20% Similarity=0.256 Sum_probs=32.7 Q ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH Q ss_conf 9999999999756998879879999999999987609989999987724 Q gi|254780638|r 22 KTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDPQKRALYDQGG 70 (384) Q Consensus 22 KkAYrklA~k~HPDkn~~d~~A~ekFkeI~eAYevLsD~~kR~~YD~~G 70 (384) .+.+|...++-||+.... +.-+.|++.+.-|++++|..=+|+.- T Consensus 19 ~~~~R~~i~~~~P~~~~~-----eisk~l~~~Wk~ls~~eK~~y~~~A~ 62 (82) T 1wz6_A 19 CKRHRSLVRQEHPRLDNR-----GATKILADWWAVLDPKEKQKYTDMAK 62 (82) T ss_dssp HHHHHHHHHHHCSSSCTT-----HHHHHHHHHHHTCCHHHHHHHHHHHH T ss_pred HHHHHHHHHHHCCCCCHH-----HHHHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 999999999987799999-----99999999998399999999999999 No 62 >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, ATP-binding cassette, cytoplasm; HET: ADP; 3.20A {Geobacillus stearothermophilus 10} Probab=38.47 E-value=14 Score=16.03 Aligned_cols=19 Identities=26% Similarity=0.581 Sum_probs=11.2 Q ss_pred CCCCCEECCCCCCCCCCCC Q ss_conf 5443100023432257885 Q gi|254780638|r 148 FPTAVKCSTCSGSGAKPGT 166 (384) Q Consensus 148 ~~~~~~C~~C~G~g~~~~~ 166 (384) |-...+|+.|+|+.-++.. T Consensus 418 y~~~~~Cp~C~G~RL~~~a 436 (972) T 2r6f_A 418 YMAEQPCPTCQGYRLKKES 436 (972) T ss_dssp GEEEEECTTTTTSCBCTTT T ss_pred HCCCCCCCCCCCCCCCHHH T ss_conf 5368776665465577787 No 63 >2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2} Probab=38.20 E-value=18 Score=15.25 Aligned_cols=52 Identities=25% Similarity=0.646 Sum_probs=30.0 Q ss_pred CCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEE------CCCCCCCC Q ss_conf 3100023432257885421035531011210011001246861666565546983------54120011 Q gi|254780638|r 151 AVKCSTCSGSGAKPGTNPMDCNICNGSGRVYTTAQSFFSIERACSTCRGSGQIIP------HPCSKCHG 213 (384) Q Consensus 151 ~~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~C~~C~G~g~i~~------~~c~~C~G 213 (384) ...|+.|+..= .+......|..|.. -+...-.|+.|.-.-.+.+ .-|..|+| T Consensus 2 ~~~CP~Cq~~L-~~~~~~~hC~~C~~----------~~~~~a~CPdC~~~Lq~LkACGAvdYFC~~cng 59 (81) T 2jrp_A 2 EITCPVCHHAL-ERNGDTAHCETCAK----------DFSLQALCPDCRQPLQVLKACGAVDYFCQNGHG 59 (81) T ss_dssp CCCCSSSCSCC-EECSSEEECTTTCC----------EEEEEEECSSSCSCCCEEEETTEEEECCTTTTC T ss_pred CCCCCCCCCCC-EECCCCEECHHHHH----------HHHHEEECCCCCCHHHHHHHCCCHHHHHCCCCC T ss_conf 88787778942-44699778067664----------466466487643679998772621576547986 No 64 >1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1 Probab=38.03 E-value=18 Score=15.23 Aligned_cols=42 Identities=12% Similarity=0.146 Sum_probs=29.7 Q ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHH Q ss_conf 99999999997569988798799999999999876099899999877 Q gi|254780638|r 22 KTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDPQKRALYDQ 68 (384) Q Consensus 22 KkAYrklA~k~HPDkn~~d~~A~ekFkeI~eAYevLsD~~kR~~YD~ 68 (384) .+.+|..-+..|||.+. .+..+.|++.+.-||+++|-.=+++ T Consensus 32 ~~~~r~~~~~~~p~~~~-----~ei~k~l~~~Wk~Ls~~eK~~Y~~~ 73 (90) T 1wgf_A 32 SEEKRRQLQEERPELSE-----SELTRLLARMWNDLSEKKKAKYKAR 73 (90) T ss_dssp HHHTHHHHHHHCTTSCH-----HHHHHHHHHHHHHSCHHHHHHHHHH T ss_pred HHHHHHHHHHHCCCCCH-----HHHHHHHHHHHHHCCHHHHHHHHHH T ss_conf 99999999987889989-----9999999999984999999999999 No 65 >2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1 Probab=37.53 E-value=18 Score=15.18 Aligned_cols=56 Identities=20% Similarity=0.521 Sum_probs=32.4 Q ss_pred CCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEE------CCCCCCCCC Q ss_conf 5443100023432257885421035531011210011001246861666565546983------541200112 Q gi|254780638|r 148 FPTAVKCSTCSGSGAKPGTNPMDCNICNGSGRVYTTAQSFFSIERACSTCRGSGQIIP------HPCSKCHGQ 214 (384) Q Consensus 148 ~~~~~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~C~~C~G~g~i~~------~~c~~C~G~ 214 (384) ..+...|+.|+..= .+......|..|.. -+...-.|+.|+-.-.+.+ .-|..|+|- T Consensus 29 ~~Me~~CP~Cq~~L-~~~~g~~hC~~C~~----------~f~~~a~CPdC~~~Lq~LkACGAvdYFC~~chgL 90 (101) T 2jne_A 29 SHMELHCPQCQHVL-DQDNGHARCRSCGE----------FIEMKALCPDCHQPLQVLKACGAVDYFCQHGHGL 90 (101) T ss_dssp --CCCBCSSSCSBE-EEETTEEEETTTCC----------EEEEEEECTTTCSBCEEEEETTEEEEEETTTTEE T ss_pred CCCCCCCCCCCCCC-EECCCCEECHHHHH----------HHHHEECCCCCCCHHHHHHHCCCHHHHHCCCCCE T ss_conf 84104585568812-24799799677765----------5676156974020999998716137776338752 No 66 >1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ... Probab=35.43 E-value=19 Score=15.08 Aligned_cols=17 Identities=18% Similarity=0.311 Sum_probs=7.9 Q ss_pred CCCCCCHHHHHHHHHHH Q ss_conf 79988999999999999 Q gi|254780638|r 12 IDRNATDRQLKTAFRSL 28 (384) Q Consensus 12 V~~~As~~eIKkAYrkl 28 (384) |+++||-.|||+|.-++ T Consensus 29 V~~~a~K~eIK~Ave~~ 45 (85) T 1vq8_S 29 VDDRASKGEVADAVEEQ 45 (85) T ss_dssp ECTTCCHHHHHHHHHHH T ss_pred ECCCCCHHHHHHHHHHH T ss_conf 85899989999999998 No 67 >2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori} Probab=33.36 E-value=18 Score=15.20 Aligned_cols=31 Identities=16% Similarity=0.325 Sum_probs=15.0 Q ss_pred CCCCCEECCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 5443100023432257885421035531011 Q gi|254780638|r 148 FPTAVKCSTCSGSGAKPGTNPMDCNICNGSG 178 (384) Q Consensus 148 ~~~~~~C~~C~G~g~~~~~~~~~C~~C~G~G 178 (384) .+....|.+|.............||.|.+.. T Consensus 70 ~p~~~~C~~Cg~~~~~~~~~~~~CP~Cgs~~ 100 (119) T 2kdx_A 70 EKVELECKDCSHVFKPNALDYGVCEKCHSKN 100 (119) T ss_dssp ECCEEECSSSSCEECSCCSTTCCCSSSSSCC T ss_pred CCCEEECCCCCCEECCCCCCCCCCCCCCCCC T ss_conf 2867898789988334775477290978999 No 68 >2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus} Probab=32.71 E-value=21 Score=14.65 Aligned_cols=27 Identities=19% Similarity=0.296 Sum_probs=14.8 Q ss_pred CEEEEECCCCCCCCEEECCCCCCCCEEEECCE Q ss_conf 24885167888231011685177887898881 Q gi|254780638|r 289 GTFDVATLDATHSRVTIPEGTQTGKQFRLKGK 320 (384) Q Consensus 289 ~~~~i~tldG~~i~i~i~~~~~~~~~~~i~g~ 320 (384) +++.||-|+ +.+.+|+..|..-.|.|. T Consensus 295 ati~IPEL~-----lev~pG~~~G~~TTVEGl 321 (404) T 2qkd_A 295 CSVEIPELE-----FELGMAVLGGKFTTLEGL 321 (404) T ss_dssp CEEEEGGGT-----EEECTTTTCSEEEEHHHH T ss_pred CEEEEEEEE-----EEECCCCCCCEEEEHHHH T ss_conf 417730257-----787587666707748999 No 69 >2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus} Probab=31.72 E-value=22 Score=14.54 Aligned_cols=43 Identities=19% Similarity=0.227 Sum_probs=31.6 Q ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH Q ss_conf 999999999756998879879999999999987609989999987724 Q gi|254780638|r 23 TAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDPQKRALYDQGG 70 (384) Q Consensus 23 kAYrklA~k~HPDkn~~d~~A~ekFkeI~eAYevLsD~~kR~~YD~~G 70 (384) +.+|...+.-|||... .+.-+.|++.+.-||+.+|..=+|++- T Consensus 20 ~~~r~~~k~~~p~~~~-----~ei~k~l~~~Wk~Ls~~eK~~y~~~a~ 62 (92) T 2crj_A 20 NERREQIRTRHPDLPF-----PEITKMLGAEWSKLQPAEKQRYLDEAE 62 (92) T ss_dssp HHHHHHHHHHCTTCCH-----HHHHHHHHHHHHTCCTTHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCCH-----HHHHHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 9999999999789999-----999999999987399999999999999 No 70 >3m1g_A Putative glutathione S-transferase; ECM4-like subfamily, GST_C family, structural genomics, PSI- 2, protein structure initiative; 2.10A {Corynebacterium glutamicum} Probab=31.12 E-value=19 Score=14.98 Aligned_cols=16 Identities=13% Similarity=0.370 Sum_probs=8.2 Q ss_pred CCCCCCHHHHHHHHHH Q ss_conf 2989999999999999 Q gi|254780638|r 341 TPQKLNKRQRELLEEF 356 (384) Q Consensus 341 ~P~~Ls~~qk~ll~~l 356 (384) +|+.|-++--++.+-+ T Consensus 177 yP~~Lr~eID~ln~~i 192 (362) T 3m1g_A 177 YPAELREEMAPVMKRI 192 (362) T ss_dssp SCGGGHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHH T ss_conf 8778888888899999 No 71 >2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A Probab=30.55 E-value=9.3 Score=17.24 Aligned_cols=21 Identities=5% Similarity=0.011 Sum_probs=15.6 Q ss_pred CCCCCHHHHHHHHHHHHHHHC Q ss_conf 998899999999999999975 Q gi|254780638|r 13 DRNATDRQLKTAFRSLAMKYH 33 (384) Q Consensus 13 ~~~As~~eIKkAYrklA~k~H 33 (384) ..+|+.++|.+....|..+|. T Consensus 179 a~~~~~~~l~~d~~~L~~~w~ 199 (517) T 2bx2_L 179 GVGKSAEALQWDLSFRLKHWE 199 (517) T ss_dssp GGGCCHHHHHHHHHHHHHHHH T ss_pred CCCCCHHHHHHHHHHHHHHHH T ss_conf 569999999999999999998 No 72 >2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 Probab=30.01 E-value=24 Score=14.34 Aligned_cols=61 Identities=11% Similarity=0.111 Sum_probs=38.9 Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC Q ss_conf 88999999999999999756998879879999999999987609989999987724876531 Q gi|254780638|r 15 NATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDPQKRALYDQGGHEALEY 76 (384) Q Consensus 15 ~As~~eIKkAYrklA~k~HPDkn~~d~~A~ekFkeI~eAYevLsD~~kR~~YD~~G~~~~~~ 76 (384) ..-.+|.+.+|++|-..+..|-+-.=.++..+|. -...|.+|...+++.+|..|-.+-.+. T Consensus 13 ~~~~ee~~~~Fk~LL~e~~i~~~~~W~~~~~~l~-~DpRy~~l~~~eR~~lF~ey~~~~~~e 73 (82) T 2dod_A 13 IVPLEARMKQFKDMLLERGVSAFSTWEKELHKIV-FDPRYLLLNPKERKQVFDQYVKTRAEE 73 (82) T ss_dssp SCCHHHHHHHHHHHHHHTTCCSSSCHHHHHHHHH-TCSGGGTSCHHHHHHHHHHHHHHHHHG T ss_pred HCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH-HCHHHCCCCHHHHHHHHHHHHHHHHHH T ss_conf 3449999999999999849799997999999986-597850498799999999999999999 No 73 >1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* Probab=29.90 E-value=9.2 Score=17.30 Aligned_cols=17 Identities=12% Similarity=0.180 Sum_probs=6.3 Q ss_pred HHHHHHHHHHHHCCHHH Q ss_conf 99999999876099899 Q gi|254780638|r 46 KFAQISEAYEVLRDPQK 62 (384) Q Consensus 46 kFkeI~eAYevLsD~~k 62 (384) .|+++-++-.-|.|++- T Consensus 192 ~~~d~~~~g~~~~d~~l 208 (572) T 1d4d_A 192 MIDDTMKGGRNINDPEL 208 (572) T ss_dssp HHHHHHHHTTTCSCHHH T ss_pred HHHHHHHHCCCCCCHHH T ss_conf 99999983379888999 No 74 >2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics; 2.10A {Pseudomonas aeruginosa PAO1} SCOP: e.59.1.1 Probab=29.74 E-value=17 Score=15.31 Aligned_cols=47 Identities=19% Similarity=0.328 Sum_probs=27.4 Q ss_pred CCCCCCCCCCCCCCCCCCEE--EEE-EEECCCCCCCCEEEECCCCCCCCC Q ss_conf 21035531011210011001--246-861666565546983541200112 Q gi|254780638|r 168 PMDCNICNGSGRVYTTAQSF--FSI-ERACSTCRGSGQIIPHPCSKCHGQ 214 (384) Q Consensus 168 ~~~C~~C~G~G~~~~~~~~~--~~~-~~~C~~C~G~g~i~~~~c~~C~G~ 214 (384) ...||+|.+........... -+. --.|..|.-.=...+..|+.|... T Consensus 182 ~g~CPvCGs~P~~s~l~~~~~~~G~R~L~CslC~teW~~~R~~C~~Cg~~ 231 (309) T 2fiy_A 182 RTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309) T ss_dssp CSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC T ss_pred CCCCCCCCCCCHHHEEECCCCCCCCEEEECCCCCCCCCEECCCCCCCCCC T ss_conf 99499999803103242368777856887688888452007779199999 No 75 >1aie_A P53; oligomer, DNA; 1.50A {Homo sapiens} SCOP: a.53.1.1 PDB: 2j0z_A 1c26_A 1pes_A 1pet_A 2j10_A 1hs5_A 2j11_A Probab=28.26 E-value=24 Score=14.28 Aligned_cols=15 Identities=40% Similarity=0.558 Sum_probs=11.4 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 799999999999876 Q gi|254780638|r 42 EAKEKFAQISEAYEV 56 (384) Q Consensus 42 ~A~ekFkeI~eAYev 56 (384) +.=|.|+|+|||-|. T Consensus 11 ~r~emfrelnealel 25 (31) T 1aie_A 11 ERFEMFRELNEALEL 25 (31) T ss_dssp HHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHH T ss_conf 899999999998752 No 76 >1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 Probab=27.20 E-value=10 Score=17.00 Aligned_cols=18 Identities=6% Similarity=-0.202 Sum_probs=7.8 Q ss_pred HHHHHHHHHHHHHCCHHH Q ss_conf 999999999876099899 Q gi|254780638|r 45 EKFAQISEAYEVLRDPQK 62 (384) Q Consensus 45 ekFkeI~eAYevLsD~~k 62 (384) +-|+++-.+=.-+.|++- T Consensus 186 ~~~~d~~~~g~~~~d~~l 203 (566) T 1qo8_A 186 WFIEDAMKGGRQQNDIKL 203 (566) T ss_dssp HHHHHHHHHTTTCSCHHH T ss_pred HHHHHHHHHCCCCCCHHH T ss_conf 999999984178785999 No 77 >1olg_A Tumor suppressor P53 (oligomerization domain); anti-oncogene; NMR {Homo sapiens} SCOP: a.53.1.1 PDB: 1olh_A 1sae_A 1saf_A 1sag_A 1sah_A 1sai_A 1saj_A 1sak_A 1sal_A 3sak_A Probab=25.75 E-value=28 Score=13.83 Aligned_cols=15 Identities=40% Similarity=0.558 Sum_probs=11.5 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 799999999999876 Q gi|254780638|r 42 EAKEKFAQISEAYEV 56 (384) Q Consensus 42 ~A~ekFkeI~eAYev 56 (384) +-=|+|.++|||.|. T Consensus 18 ~r~emfrelNeAlEl 32 (42) T 1olg_A 18 ERFEMFRELNEALEL 32 (42) T ss_dssp HHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHH T ss_conf 899999999998750 No 78 >1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 Probab=25.63 E-value=28 Score=13.82 Aligned_cols=55 Identities=18% Similarity=0.221 Sum_probs=34.0 Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH--HHHHHHHCCH-HHHHHHHHHHH Q ss_conf 9889999999999999997569988798799999999--9998760998-99999877248 Q gi|254780638|r 14 RNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQI--SEAYEVLRDP-QKRALYDQGGH 71 (384) Q Consensus 14 ~~As~~eIKkAYrklA~k~HPDkn~~d~~A~ekFkeI--~eAYevLsD~-~kR~~YD~~G~ 71 (384) .-++.+|.+.+|++|-..+. .++... .++-.+.| ...|..|.+. +++.+|..|-. T Consensus 10 ~~~~~eea~~~F~~LL~e~~--v~~~~~-W~~~~~~~~~DpRy~av~~~~eRe~lF~ey~~ 67 (71) T 1uzc_A 10 TWNTKEEAKQAFKELLKEKR--VPSNAS-WEQAMKMIINDPRYSALAKLSEKKQAFNAYKV 67 (71) T ss_dssp CCCSHHHHHHHHHHHHHHTT--CCTTCC-HHHHHHHHHTSGGGGGCSSHHHHHHHHHHHHH T ss_pred HHCCHHHHHHHHHHHHHHCC--CCCCCC-HHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHH T ss_conf 01269999999999999869--798996-99999986579451206988899999999999 No 79 >2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens} Probab=25.50 E-value=28 Score=13.80 Aligned_cols=41 Identities=7% Similarity=0.246 Sum_probs=29.0 Q ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHH Q ss_conf 9999999997569988798799999999999876099899999877 Q gi|254780638|r 23 TAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDPQKRALYDQ 68 (384) Q Consensus 23 kAYrklA~k~HPDkn~~d~~A~ekFkeI~eAYevLsD~~kR~~YD~ 68 (384) +.+|....+-|||.+. .+.-+.|++.+--|++++|..=+++ T Consensus 30 ~~~R~~i~~~~P~~~~-----~eisk~l~~~Wk~Ls~~eK~~y~~~ 70 (87) T 2e6o_A 30 KKYRVEYTQMYPGKDN-----RAISVILGDRWKKMKNEERRMYTLE 70 (87) T ss_dssp HHTHHHHHHHCTTSCH-----HHHHHHHHHHHHHSCHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCCH-----HHHHHHHHHHHHHCCHHHHHHHHHH T ss_conf 9999999999779988-----9999999999873999999999999 No 80 >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* Probab=23.89 E-value=30 Score=13.60 Aligned_cols=18 Identities=17% Similarity=0.567 Sum_probs=9.8 Q ss_pred CCCCCEECCCCCCCCCCC Q ss_conf 544310002343225788 Q gi|254780638|r 148 FPTAVKCSTCSGSGAKPG 165 (384) Q Consensus 148 ~~~~~~C~~C~G~g~~~~ 165 (384) +-....|+.|+|+.-++. T Consensus 281 ~~~~~~Cp~C~G~RL~~e 298 (842) T 2vf7_A 281 YMISEECPLCHGKRLRQE 298 (842) T ss_dssp GCEEEECSSSSSSCBCTT T ss_pred HCCCCCCCCCCCCCCCHH T ss_conf 316674764568767899 No 81 >3fn2_A Putative sensor histidine kinase domain; GUT microbiome, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Clostridium symbiosum atcc 14940} Probab=23.28 E-value=19 Score=15.09 Aligned_cols=36 Identities=19% Similarity=0.220 Sum_probs=21.4 Q ss_pred HHHHHHHHHHHHHH----HCCHHHHHHHHHHHHHHHHCCC Q ss_conf 99999999999876----0998999998772487653145 Q gi|254780638|r 43 AKEKFAQISEAYEV----LRDPQKRALYDQGGHEALEYGA 78 (384) Q Consensus 43 A~ekFkeI~eAYev----LsD~~kR~~YD~~G~~~~~~~~ 78 (384) |...|..++.--+- ||-.+-|..|..|+++.++-.+ T Consensus 17 Ar~mf~~~n~di~yL~grlSe~Eir~kYr~y~~~yvRItd 56 (106) T 3fn2_A 17 AVYMFEEINRDVEYLSGRLSEKELKDKYRYYGRGYVRITD 56 (106) T ss_dssp HHHHHHHHHHHHHHHTTTSCHHHHHHHHSSTTTCEEEEEC T ss_pred HHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHCCCEEEEEC T ss_conf 9999998711368765502589999998750574178974 No 82 >2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structural genomics, PSI; NMR {Pyrococcus furiosus dsm 3638} SCOP: a.4.5.82 Probab=21.64 E-value=33 Score=13.29 Aligned_cols=10 Identities=30% Similarity=0.810 Sum_probs=4.4 Q ss_pred CCCCCCCCCC Q ss_conf 4210355310 Q gi|254780638|r 167 NPMDCNICNG 176 (384) Q Consensus 167 ~~~~C~~C~G 176 (384) .|..||.|.+ T Consensus 83 kPSRCP~CKS 92 (105) T 2gmg_A 83 IPSRCPKCKS 92 (105) T ss_dssp CCSSCSSSCC T ss_pred CCCCCCCCCC T ss_conf 9998999887 No 83 >3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, alternative splicing, DNA-binding, nucleus; HET: DNA; 2.75A {Mus musculus} PDB: 2yul_A Probab=21.18 E-value=34 Score=13.23 Aligned_cols=41 Identities=17% Similarity=0.269 Sum_probs=29.2 Q ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHH Q ss_conf 9999999997569988798799999999999876099899999877 Q gi|254780638|r 23 TAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDPQKRALYDQ 68 (384) Q Consensus 23 kAYrklA~k~HPDkn~~d~~A~ekFkeI~eAYevLsD~~kR~~YD~ 68 (384) +.+|...++-|||.+. .+.-+.|++.+..||+++|..=.++ T Consensus 19 ~~~r~~i~~~~P~~~~-----~eisk~lg~~Wk~ls~~eK~~y~~~ 59 (83) T 3f27_D 19 KDERKRLAQQNPDLHN-----AELSKMLGKSWKALTLAEKRPFVEE 59 (83) T ss_dssp HHHHHHHHHHCSSSCH-----HHHHHHHHHHHHHSCHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCCH-----HHHHHHHHHHHHCCCHHHHHHHHHH T ss_conf 9999999988658999-----9999999999923999999999999 No 84 >1nnq_A Rubrerythrin; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.35A {Pyrococcus furiosus} SCOP: a.25.1.1 g.41.5.1 PDB: 2hr5_A Probab=21.17 E-value=28 Score=13.82 Aligned_cols=28 Identities=18% Similarity=0.568 Sum_probs=15.9 Q ss_pred CCCCCEECCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 544310002343225788542103553101 Q gi|254780638|r 148 FPTAVKCSTCSGSGAKPGTNPMDCNICNGS 177 (384) Q Consensus 148 ~~~~~~C~~C~G~g~~~~~~~~~C~~C~G~ 177 (384) ....=.|+.|.-.-. +..|..||.|+-. T Consensus 136 ~~~~~vC~~CG~i~~--g~~P~~CPvC~~p 163 (171) T 1nnq_A 136 IKKVYICPICGYTAV--DEAPEYCPVCGAP 163 (171) T ss_dssp CSCEEECTTTCCEEE--SCCCSBCTTTCCB T ss_pred CCCEEECCCCCCCCC--CCCCCCCCCCCCC T ss_conf 787358998939389--9999979799996 No 85 >1a1u_A P53; oligomerization domain, human, anti-oncogene; NMR {Homo sapiens} SCOP: a.53.1.1 Probab=20.91 E-value=34 Score=13.19 Aligned_cols=15 Identities=40% Similarity=0.450 Sum_probs=11.2 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 799999999999876 Q gi|254780638|r 42 EAKEKFAQISEAYEV 56 (384) Q Consensus 42 ~A~ekFkeI~eAYev 56 (384) +-=|+|.|+|||-|. T Consensus 13 ~rfemfrElNeALEl 27 (35) T 1a1u_A 13 ERFEKIREYNEALEL 27 (35) T ss_dssp HHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHH T ss_conf 999999999998850 No 86 >1jei_A Emerin; membrane protein; NMR {Synthetic} SCOP: a.140.1.1 PDB: 2odc_I 2odg_C Probab=20.38 E-value=16 Score=15.59 Aligned_cols=19 Identities=21% Similarity=0.223 Sum_probs=15.8 Q ss_pred HHHHHCCHHHHHHHHHHHH Q ss_conf 9876099899999877248 Q gi|254780638|r 53 AYEVLRDPQKRALYDQGGH 71 (384) Q Consensus 53 AYevLsD~~kR~~YD~~G~ 71 (384) -|.+|||.+-+++-|+|+. T Consensus 2 ~y~~lSd~El~~lL~~y~I 20 (53) T 1jei_A 2 NYADLSDTELTTLLRRYNI 20 (53) T ss_dssp CTTTCCHHHHHHHHSSSCC T ss_pred CHHHHCHHHHHHHHHHHCC T ss_conf 2656168999999999299 Done!