RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780638|ref|YP_003065051.1| molecular chaperone protein DnaJ [Candidatus Liberibacter asiaticus str. psy62] (384 letters) >gnl|CDD|30832 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]. Length = 371 Score = 456 bits (1175), Expect = e-129 Identities = 207/382 (54%), Positives = 266/382 (69%), Gaps = 12/382 (3%) Query: 1 MKKADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDP 60 M K D+Y++LG+ ++A++ ++K A+R LA KYHPD+N D EA+EKF +I+EAYEVL DP Sbjct: 1 MAKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDP 60 Query: 61 QKRALYDQGGHEALEYGAQSQGAGGFGAGMYGNSDFSELFEGIFGGIMGSGRSYKRSSST 120 +KRA YDQ GH + G G GGFG G +G DF ++FE FGG G G + + Sbjct: 61 EKRAAYDQFGHAGFKAG----GFGGFGFGGFG-GDFGDIFEDFFGG--GGGGRRRPNRP- 112 Query: 121 GEAGADLRYNLEISLEEAFSGKTVQIRFPTAVKCSTCSGSGAKPGTNPMDCNICNGSGRV 180 GADLRYNLEI+LEEA G +IR +V CSTC GSGAKPGT+P C CNGSG+V Sbjct: 113 -RRGADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHGSGAKPGTDPKTCPTCNGSGQV 171 Query: 181 YTTAQS-FFSIERACSTCRGSGQIIPHPCSKCHGQGRVSEEKLLSVNVPPGVDDGTRIRL 239 T ++ FFS ++ C TC G+G+II PC KC G+GRV ++K +SVN+P GVDDG RIRL Sbjct: 172 RTVQRTGFFSFQQTCPTCNGTGKIIKDPCGKCKGKGRVKKKKSISVNIPAGVDDGDRIRL 231 Query: 240 SGEGGAGVYGGAPGDLYIFISVKKHQFFKRDGADLYCTVPISIVTVAMGGTFDVATLDAT 299 SGEG AG GG GDLY+F+ VK H F+RDG DLYC VPIS A+GG +V TLD Sbjct: 232 SGEGEAGPNGGPAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTEAALGGEIEVPTLDGR 291 Query: 300 HSRVTIPEGTQTGKQFRLKGKGMPVINSGRKGDLYVQVQVETPQKLNKRQRELLEEFEQI 359 ++ IP GTQTG+ FRL+GKGMP + SG +GDLYV+V+VETP+ L+ Q+ELLEEF + Sbjct: 292 -VKLKIPAGTQTGEVFRLRGKGMPKLRSGGRGDLYVRVKVETPKNLSDEQKELLEEFAKS 350 Query: 360 SSQDNNPQSTGFFARMKDFFDS 381 + QS GFF ++K+FF Sbjct: 351 LG-EGPEQSPGFFDKLKNFFKG 371 >gnl|CDD|35931 KOG0712, KOG0712, KOG0712, Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]. Length = 337 Score = 225 bits (575), Expect = 1e-59 Identities = 135/364 (37%), Positives = 192/364 (52%), Gaps = 36/364 (9%) Query: 1 MKKADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDP 60 +K Y +LG+ +A++ ++K A+R LA+KYHPD+N P+A EKF +IS+AYEVL DP Sbjct: 1 VKNTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKN---PDAGEKFKEISQAYEVLSDP 57 Query: 61 QKRALYDQGGHEALEYGAQSQGAGGFGAGMYGNSDFSELFEGIFGGIMGSGRSYKRSSST 120 +KR +YDQ G E L GG G G G F FG GR +R Sbjct: 58 EKREIYDQYGEEGL-------QGGGGGGGFGG-------FSQFFGFGGNGGRGRQR---- 99 Query: 121 GEAGADLRYNLEISLEEAFSGKTVQIRFPTAVKCSTCSGSGAKPGTNPMDCNICNGSGRV 180 G D+ + L+++LEE + GK+ ++ CS CSGSG K G+ P C C GSG Sbjct: 100 ---GKDVVHQLKVTLEELYMGKSKKLFLSRNFICSKCSGSGGKSGSAP-KCTTCRGSGVQ 155 Query: 181 YTTAQS----FFSIERACSTCRGSGQIIP--HPCSKCHGQGRVSEEKLLSVNVPPGVDDG 234 T Q S + C +C GSG+ I C C G V E+K+L V+V PG+ G Sbjct: 156 TRTRQMGPGMVQSPQLVCDSCNGSGETISLKDRCKTCSGAKVVREKKILEVHVEPGMPHG 215 Query: 235 TRIRLSGEGGAGVYGGAPGDLYIFISVKKHQFFKRDGADLYCTVPISIVTVAMGGTFDVA 294 +I GE G PGD+ + I K+H F R G+DLY + IS+V G Sbjct: 216 QKITFKGEADE-APGTKPGDVVLLIDQKEHPGFDRRGSDLYRKLTISLVEALCGFQRVWE 274 Query: 295 TLDATHSRVTIPEG--TQTGKQFRLKGKGMPVINSGRKGDLYVQVQVETPQKLNKRQREL 352 TLD +++ G G R++G+GMP+ + KGDLY++ +V+ P KL+ Q ++ Sbjct: 275 TLDGRLLKLSSKPGEVISPGDTKRVEGEGMPIFRNP-KGDLYIKFEVKFP-KLSPSQLKM 332 Query: 353 LEEF 356 LE+ Sbjct: 333 LEDL 336 >gnl|CDD|35934 KOG0715, KOG0715, KOG0715, Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]. Length = 288 Score = 186 bits (474), Expect = 8e-48 Identities = 97/284 (34%), Positives = 134/284 (47%), Gaps = 35/284 (12%) Query: 1 MKKADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDP 60 + K D+Y+VLG+ RNAT ++K+AFR LA KYHPD N+ D EA +KF +ISEAYE+L D Sbjct: 40 ISKEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNK-DKEASKKFKEISEAYEILSDE 98 Query: 61 QKRALYDQGGHEALEYGAQSQGAGGFGAGMYGNSDFSELFEGIFGGIMGSGRSYKRSSST 120 +KR YD G E + ++F FGG M KR Sbjct: 99 EKRQEYDVYGLEQHGEFG---------------GNPFDVFLEFFGGKM-----NKRVP-- 136 Query: 121 GEAGADLRYNLEISLEEAFSGKTVQIRFPTAVKCSTCSGSGAKPGTNPMDCNICNGSGRV 180 D Y+L + +EA G +I F C TC GSGA+ G C C+G G V Sbjct: 137 ---DKDQYYDLSLDFKEAVRGSKKRISFNVLSDCETCFGSGAEEGAKRESCKTCSGRGLV 193 Query: 181 YTTAQSFFSIERACSTCRGSGQIIPHPCSKCHGQGRVSEEKLLSVNVPPGVDDGTRIRLS 240 + F + CS C G G ++ C C G G+V K + + +P GV +R + Sbjct: 194 SNPKEDPFILY-TCSYCLGRGLVLRDNCQACSGAGQVRRAKDIMIVLPAGVRSADTLRFA 252 Query: 241 GEGGAGVYGGAPGDLYIFISVKKHQFFKRDGADLYCTVPISIVT 284 G G DL++ + V K F+R+G D+ IS Sbjct: 253 GHGND--------DLFVRLIVAKSPSFRREGKDILYDAIISFTQ 288 >gnl|CDD|35932 KOG0713, KOG0713, KOG0713, Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]. Length = 336 Score = 170 bits (431), Expect = 6e-43 Identities = 109/349 (31%), Positives = 151/349 (43%), Gaps = 40/349 (11%) Query: 5 DFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDPQKRA 64 DFY++LG+ +NA+D+++K A+R LA+KYHPD+N +DP A EKF +I+ AYEVL DP+KR Sbjct: 17 DFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRK 76 Query: 65 LYDQGGHEALEYGAQSQGAGGFGAGMYGNSDFSELFEGIFGGIMGSGRSYKRSSSTGEA- 123 YD G E L+ G GN FS F + G+ EA Sbjct: 77 HYDTYGEEGLK-----DENKDGEGGGGGNDIFSAFFGDFGVTVGGNPL--------EEAL 123 Query: 124 --GADLRYNLEISLEEAFSGKTVQIRFPTAVKCSTCSGSGAKPGTNPMDCNICNGSGRVY 181 G+D+ +LE LE + G V+ V G ++ Sbjct: 124 PKGSDVSSDLEKQLEHFYMGNFVEEVREKGVYKPAPGTRKCNCRLEMFTQQEGPGRFQML 183 Query: 182 TTAQSFFSIERACSTCRGSGQIIPHPCSKCHGQGRVSEEKLLSVNVPPGVDDGTRIRLSG 241 A C +C V EE L V G DG Sbjct: 184 QEAV----------------------CDECPNVKLVLEEDPLEVEFERGDADGPEEIFEL 221 Query: 242 EGGAGVYGGAPGDLYIFISVKKHQFFKRDGADLYCTVPISIVTVAMGGTFDVATLDATHS 301 EG + G PGDL+ I H F+R G DLY V IS+ +G ++ LD + Sbjct: 222 EGEPHID-GVPGDLFFKIVSYTHPRFERKGDDLYTNVTISLEAALVGFEMEILHLDGHYV 280 Query: 302 RVTIPEGTQTGKQFRLKGKGMPVI-NSGRKGDLYVQVQVETPQKLNKRQ 349 V+ + T G + R KG+GMP++ N KG+LYV VE P+ Sbjct: 281 EVSRKKITWPGARTRKKGEGMPLLKNRNEKGNLYVTFDVEFPKSSLSDS 329 >gnl|CDD|144958 pfam01556, DnaJ_C, DnaJ C terminal region. This family consists of the C terminal region form the DnaJ protein. Although the function of this region is unknown, it is always found associated with pfam00226 and pfam00684. DnaJ is a chaperone associated with the Hsp70 heat-shock system involved in protein folding and renaturation after stress. Length = 101 Score = 136 bits (344), Expect = 1e-32 Identities = 53/101 (52%), Positives = 67/101 (66%), Gaps = 1/101 (0%) Query: 253 GDLYIFISVKKHQFFKRDGADLYCTVPISIVTVAMGGTFDVATLDATHSRVTIPEGTQTG 312 GDLY+ I VK H FKRDG DLY T+PIS+ +GGT +V TLD ++ IP GTQ G Sbjct: 1 GDLYVVIKVKPHPVFKRDGNDLYVTLPISLKEALLGGTVEVPTLDGRKLKIKIPAGTQPG 60 Query: 313 KQFRLKGKGMPVI-NSGRKGDLYVQVQVETPQKLNKRQREL 352 R+KGKGMP+ SG +GDL V V+ P+KL+ Q+EL Sbjct: 61 DVLRIKGKGMPIFKGSGGRGDLIVTFNVKIPKKLSSEQKEL 101 Score = 39.4 bits (93), Expect = 0.002 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%) Query: 221 KLLSVNVPPGVDDGTRIRLSGEG-GAGVYGGAPGDLYIFISVK 262 + L + +P G G +R+ G+G G GDL + +VK Sbjct: 47 RKLKIKIPAGTQPGDVLRIKGKGMPIFKGSGGRGDLIVTFNVK 89 Score = 29.8 bits (68), Expect = 1.1 Identities = 12/24 (50%), Positives = 15/24 (62%) Query: 124 GADLRYNLEISLEEAFSGKTVQIR 147 G DL L ISL+EA G TV++ Sbjct: 19 GNDLYVTLPISLKEALLGGTVEVP 42 >gnl|CDD|143981 pfam00226, DnaJ, DnaJ domain. DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature. Length = 63 Score = 113 bits (286), Expect = 7e-26 Identities = 39/63 (61%), Positives = 55/63 (87%) Query: 5 DFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDPQKRA 64 D+Y++LG+ R+A+D ++K A+R LA+KYHPD+N DPEA+EKF +I+EAYEVL DP+KRA Sbjct: 1 DYYEILGVPRDASDEEIKKAYRKLALKYHPDKNPGDPEAEEKFKEINEAYEVLSDPEKRA 60 Query: 65 LYD 67 +YD Sbjct: 61 IYD 63 >gnl|CDD|35933 KOG0714, KOG0714, KOG0714, Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]. Length = 306 Score = 99.0 bits (245), Expect = 2e-21 Identities = 90/326 (27%), Positives = 138/326 (42%), Gaps = 26/326 (7%) Query: 3 KADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQN-RNDPEAKEKFAQISEAYEVLRDPQ 61 D+Y++LGI R+A++ +K A+R LA+KYHPD+N A+ KF +I+EAYEVL DP+ Sbjct: 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPK 61 Query: 62 KRALYDQGGHEALEYGAQSQGAGGFGAGMYGNSDFSELFEGIFGGIMGSGRSYKRSSSTG 121 KR +YDQ G E L+ G + + + F FG S Sbjct: 62 KRKIYDQYGEEGLKGGGSFSSSFTSELFYFLFRKPDKDFYEFFG---VSSPFSGSKKGYR 118 Query: 122 EAGADLRYNLEISLEEAFSGKTVQIRFPTAVKCSTCSGSGAKPGTNPMDCNICNGSGRVY 181 + A S +AF R S S + P +P+ Sbjct: 119 DKNAAPGEEAFKSEGKAFQSLYGPKRKQYDSSGSDRSARQSPPVEHPLRV---------- 168 Query: 182 TTAQSFFSIERACSTCRGSGQIIPHPCSKCHGQGRVSEEKLLSVNVPPGVDDGTRIRLSG 241 S+E +I + G+ S + LS+++ PG +GT+I Sbjct: 169 -------SLEDLYKGESKKMKISRQSFTSN-GREGSSRSRYLSISIKPGWKEGTKITFPE 220 Query: 242 EGGAGVYGGAPGDLYIFISVKKHQFFKRDGADLYCTVP--ISIVTVAMGGTFDVATLDAT 299 EG G P D+ + K H F RDG DL + IS+ +G T V TLD Sbjct: 221 EGD-EEPGILPADIEFVVDEKPHPLFSRDGNDLSYSSGYEISLKEALLGVTVFVPTLDGR 279 Query: 300 HSRVTIPEGT-QTGKQFRLKGKGMPV 324 ++I + + G++ + G+G+P Sbjct: 280 SYSLSINKDLIEPGEEDVIPGEGLPC 305 >gnl|CDD|35910 KOG0691, KOG0691, KOG0691, Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]. Length = 296 Score = 94.0 bits (233), Expect = 6e-20 Identities = 40/97 (41%), Positives = 56/97 (57%) Query: 2 KKADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDPQ 61 K D+Y +LGI +ATD ++K A+R A++YHPD+N DP+A EKF ++SEAYEVL D + Sbjct: 3 KDTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEE 62 Query: 62 KRALYDQGGHEALEYGAQSQGAGGFGAGMYGNSDFSE 98 RA YD+ + A GF + E Sbjct: 63 SRAAYDKLRKSGSSAQGREDQADGFRKKFGSDLFERE 99 >gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.. Length = 55 Score = 92.6 bits (231), Expect = 2e-19 Identities = 32/55 (58%), Positives = 46/55 (83%) Query: 5 DFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRD 59 D+Y +LG+ +A+D ++K A+R LA+KYHPD+N +DPEA+EKF +I+EAYEVL D Sbjct: 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 >gnl|CDD|35935 KOG0716, KOG0716, KOG0716, Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]. Length = 279 Score = 89.8 bits (222), Expect = 1e-18 Identities = 35/70 (50%), Positives = 50/70 (71%) Query: 5 DFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDPQKRA 64 D Y VLG+ + AT ++K A+R LA+KYHPD+N ++PEA +KF +I+ AY +L DP KR Sbjct: 32 DLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRN 91 Query: 65 LYDQGGHEAL 74 +YD+ G L Sbjct: 92 VYDEYGELGL 101 >gnl|CDD|144326 pfam00684, DnaJ_CXXCXGXG, DnaJ central domain (4 repeats). The central cysteine-rich (CR) domain of DnaJ proteins contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DNAJ cysteine rich domain and various hydrophobic peptides has been found. Length = 79 Score = 86.7 bits (215), Expect = 1e-17 Identities = 33/79 (41%), Positives = 39/79 (49%), Gaps = 4/79 (5%) Query: 141 GKTVQIRFPTAVKCSTCSGSGAKPGTNPMDCNICNGSGRVYT---TAQSFFSIERACSTC 197 G T I V C C G+GAKPG P C CNGSG V T F ++ C C Sbjct: 1 GTTKTITLSRKVTCPHCHGTGAKPGKKPKTCPTCNGSGVVVRVQRTPGGVFQFQQTCPAC 60 Query: 198 RGSGQII-PHPCSKCHGQG 215 G+G+II PC C G+G Sbjct: 61 GGTGKIIEKDPCKVCKGKG 79 >gnl|CDD|35843 KOG0624, KOG0624, KOG0624, dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]. Length = 504 Score = 84.7 bits (209), Expect = 4e-17 Identities = 41/116 (35%), Positives = 64/116 (55%), Gaps = 9/116 (7%) Query: 3 KADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPE---AKEKFAQISEAYEVLRD 59 K D+Y++LG+ RNA+ +++ A+R LA K+HPD +++ E A++KF I+ A EVL D Sbjct: 393 KRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSD 452 Query: 60 PQKRALYDQGGHEALEYGAQSQGAGGFGAGMYGNSDFSELFEGIFGGIMGSGRSYK 115 P+KR +D G + L+ +Q G GG G + F FGG + Sbjct: 453 PEKRRQFDN-GEDPLDPESQQGGGGGPFHGFWNEHGF-----NPFGGGGPFQFKFH 502 >gnl|CDD|32396 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]. Length = 237 Score = 84.5 bits (207), Expect = 5e-17 Identities = 65/274 (23%), Positives = 103/274 (37%), Gaps = 53/274 (19%) Query: 5 DFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDP-EAKEKFAQISEAYEVLRDPQKR 63 D+Y++LG+ NA+ ++K A+R LA+KYHPD+N DP A+EKF +I+EAYE+L DP++R Sbjct: 7 DYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERR 66 Query: 64 ALYDQGGHEALEYGAQSQGAGGFGAGMYGNSDFSELFEGIFGGIMGSGRSYKRSSSTGEA 123 A YD+ G + G + + F + G+ + L+E G + K S + + Sbjct: 67 AEYDKIGADNYFPGKSYRESAAF--PIEGSLQLTGLYEEWRGK--RNKTERKASLADLLS 122 Query: 124 GADLRYNLEISLEEAFSGKTV-QIRFPTAVKCSTCSGSGAKPGTNPMDCNICNGSGRVYT 182 +SL + +R + A G Sbjct: 123 RGLSGLAAALSLFADEAALRSGSLRRRDLAANLADNFEEALAGVK--------------- 167 Query: 183 TAQSFFSIERACSTCRGSGQIIPHPCSKCHGQGRVSEEKLLSVNVPPGVDDGTRIRLSGE 242 K L + G +G +RL G Sbjct: 168 ------------------------------KAVARLLGKALKSTIKAGALEGKALRLKGL 197 Query: 243 GGAGVYGGAPGDLYIFISVKKHQFFKRDGADLYC 276 + GA G + K+H F +G D Y Sbjct: 198 LKSA--RGALGKARLKELSKRHPPFALEGDDKYP 229 >gnl|CDD|35936 KOG0717, KOG0717, KOG0717, Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]. Length = 508 Score = 81.3 bits (200), Expect = 5e-16 Identities = 34/67 (50%), Positives = 48/67 (71%), Gaps = 1/67 (1%) Query: 2 KKADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNR-NDPEAKEKFAQISEAYEVLRDP 60 KK +Y+VLG++R+A D ++K +R LA++YHPD+N EA ++F I AYEVL DP Sbjct: 6 KKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDP 65 Query: 61 QKRALYD 67 Q+RA YD Sbjct: 66 QERAWYD 72 >gnl|CDD|35937 KOG0718, KOG0718, KOG0718, Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]. Length = 546 Score = 80.0 bits (197), Expect = 1e-15 Identities = 34/75 (45%), Positives = 52/75 (69%), Gaps = 5/75 (6%) Query: 5 DFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPE----AKEKFAQISEAYEVLRDP 60 + Y +L + ++ATD ++K A+R L+ +HPD++ DP+ A+EKF +I AYEVL DP Sbjct: 10 ELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHT-DPDQKKAAEEKFQRIQRAYEVLSDP 68 Query: 61 QKRALYDQGGHEALE 75 QKRA+YD G + L+ Sbjct: 69 QKRAIYDNYGEQGLK 83 >gnl|CDD|35938 KOG0719, KOG0719, KOG0719, Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]. Length = 264 Score = 75.8 bits (186), Expect = 2e-14 Identities = 33/70 (47%), Positives = 53/70 (75%), Gaps = 2/70 (2%) Query: 3 KADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQN--RNDPEAKEKFAQISEAYEVLRDP 60 K D Y+VLG++R+ATD++++ A+ LA++ HPD+N + EA EKF Q+ +AY++L D Sbjct: 13 KKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDE 72 Query: 61 QKRALYDQGG 70 +KRA+YD+ G Sbjct: 73 EKRAVYDETG 82 >gnl|CDD|35940 KOG0721, KOG0721, KOG0721, Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]. Length = 230 Score = 74.2 bits (182), Expect = 5e-14 Identities = 36/139 (25%), Positives = 64/139 (46%), Gaps = 19/139 (13%) Query: 1 MKKADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDP 60 +K D Y++LG+D A+++++K A+R L++KYHPD+ + +E F I++AY+ L D Sbjct: 96 RQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDK 155 Query: 61 QKRALYDQGGHEALEYGAQSQGAGGFGAGM--------YGNSDFSELFEGIFGGI---MG 109 + R +++ G+ G G+ S F G+ G+ + Sbjct: 156 KSRENWEKYGNP--------DGPQATSFGIALPKWIVDKEGSPGVLGFYGLVFGVILPVF 207 Query: 110 SGRSYKRSSSTGEAGADLR 128 GR + RS G Sbjct: 208 VGRWWYRSRGYTGDGVHFV 226 >gnl|CDD|35941 KOG0722, KOG0722, KOG0722, Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]. Length = 329 Score = 71.6 bits (175), Expect = 3e-13 Identities = 29/65 (44%), Positives = 44/65 (67%), Gaps = 1/65 (1%) Query: 3 KADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDPQK 62 + Y VLG+ R A ++ A+R LA ++HPD+NR DPE+K+ F +I+ AYE+L+D + Sbjct: 32 AENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNR-DPESKKLFVKIATAYEILKDNET 90 Query: 63 RALYD 67 R YD Sbjct: 91 RTQYD 95 >gnl|CDD|35770 KOG0550, KOG0550, KOG0550, Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]. Length = 486 Score = 64.4 bits (156), Expect = 5e-11 Identities = 37/96 (38%), Positives = 55/96 (57%), Gaps = 10/96 (10%) Query: 2 KKADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNR-NDPEAKEKFAQISEAYEVLRDP 60 K+ D+Y++LGI RNA+D ++K A+R LA+ +HPD+N + EA+ KF ++ EAY +L DP Sbjct: 371 KRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDP 430 Query: 61 QKRALYDQGGHEALEYGAQS-------QGAGGFGAG 89 KR +D G + LE F A Sbjct: 431 MKRVRFDSG--QDLEEVGSGGAGFDPFNIFRAFQAL 464 >gnl|CDD|34966 COG5407, SEC63, Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]. Length = 610 Score = 61.6 bits (149), Expect = 4e-10 Identities = 26/72 (36%), Positives = 44/72 (61%), Gaps = 5/72 (6%) Query: 5 DFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDP-----EAKEKFAQISEAYEVLRD 59 D Y++LGID++ ++R +K +R L+MK+HPD+ E +EK+ I++AY +L D Sbjct: 99 DPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTD 158 Query: 60 PQKRALYDQGGH 71 ++R Y G Sbjct: 159 KKRRENYLNYGT 170 >gnl|CDD|35939 KOG0720, KOG0720, KOG0720, Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]. Length = 490 Score = 60.4 bits (146), Expect = 8e-10 Identities = 26/64 (40%), Positives = 36/64 (56%), Gaps = 1/64 (1%) Query: 5 DFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDPQKRA 64 D Y LG+ + +D LK +R AM HPD+N P A+E F ++ A+EV+ D KR Sbjct: 236 DAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMI-PRAEEAFKKLQVAFEVIGDSVKRK 294 Query: 65 LYDQ 68 YD Sbjct: 295 EYDL 298 >gnl|CDD|37000 KOG1789, KOG1789, KOG1789, Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport, Posttranslational modification, protein turnover, chaperones]. Length = 2235 Score = 52.8 bits (126), Expect = 2e-07 Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 7/61 (11%) Query: 1 MKKADFYQVLGIDRNATDR----QLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEV 56 M ++L +D + +++ + LA KYHPD+N PE +E F ++++AYE+ Sbjct: 1278 MSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKN---PEGREMFERVNKAYEL 1334 Query: 57 L 57 L Sbjct: 1335 L 1335 >gnl|CDD|34866 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]. Length = 379 Score = 50.1 bits (119), Expect = 9e-07 Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 11/74 (14%) Query: 2 KKADFYQVLGIDR---NATDRQLKTAFRSLAMKYHPDQ-----NRNDPEAKEKFAQISEA 53 KK D Y +LG+ + A Q+ A + KYHPD+ N+ E F I +A Sbjct: 41 KKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEF---FKLIQKA 97 Query: 54 YEVLRDPQKRALYD 67 EVL D + R YD Sbjct: 98 REVLGDRKLRLQYD 111 >gnl|CDD|36365 KOG1150, KOG1150, KOG1150, Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]. Length = 250 Score = 44.7 bits (105), Expect = 4e-05 Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 1/58 (1%) Query: 7 YQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRND-PEAKEKFAQISEAYEVLRDPQKR 63 ++VL ID TD +K +R L++ HPD+N +D A++ F + +AY++L + + R Sbjct: 56 FEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIR 113 >gnl|CDD|38024 KOG2813, KOG2813, KOG2813, Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]. Length = 406 Score = 43.6 bits (102), Expect = 9e-05 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 15/68 (22%) Query: 150 TAVKCSTCSGSGAKPGTNPMDCNICNGSGRVYTTAQSFFSIERACSTCRGSGQIIPHPCS 209 T + C +C+G C +C+G G + C TC+G G+ PC+ Sbjct: 216 TPMHCMSCTGVPPPKIGTHDLCYMCHGRGI------------KECHTCKGRGKK---PCT 260 Query: 210 KCHGQGRV 217 C G G + Sbjct: 261 TCSGTGSL 268 >gnl|CDD|31274 COG1076, DjlA, DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]. Length = 174 Score = 40.7 bits (95), Expect = 7e-04 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 5/52 (9%) Query: 20 QLKTAFRSLAMKYHPDQNRNDPEAK-----EKFAQISEAYEVLRDPQKRALY 66 LK +R L YHPD+ EA+ ++ A+++ AY+ L+DP RA Y Sbjct: 19 ALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEY 70 Score = 39.9 bits (93), Expect = 0.001 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 7/61 (11%) Query: 5 DFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQ--NRNDPE-----AKEKFAQISEAYEVL 57 D +VLG++ A +K A+R L + HPD+ + KEK +I EAYE + Sbjct: 114 DALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 Query: 58 R 58 + Sbjct: 174 K 174 >gnl|CDD|35788 KOG0568, KOG0568, KOG0568, Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]. Length = 342 Score = 40.2 bits (93), Expect = 9e-04 Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 1/50 (2%) Query: 5 DFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAY 54 + +++LG++ A +++ AF LA + HPD + +A +F QI EA+ Sbjct: 48 ECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADA-ARFIQIDEAF 96 >gnl|CDD|31448 COG1256, FlgK, Flagellar hook-associated protein [Cell motility and secretion]. Length = 552 Score = 33.1 bits (75), Expect = 0.12 Identities = 14/67 (20%), Positives = 27/67 (40%) Query: 318 KGKGMPVINSGRKGDLYVQVQVETPQKLNKRQRELLEEFEQISSQDNNPQSTGFFARMKD 377 G G+ V++ R D ++ Q + + Q+ S + P + + D Sbjct: 56 VGTGVNVVSIQRLRDEFLTNQYRNANSQSSYLDTRASQLSQLESLLSEPSESSLSTLLND 115 Query: 378 FFDSLKN 384 FF+SL+ Sbjct: 116 FFNSLQE 122 >gnl|CDD|35942 KOG0723, KOG0723, KOG0723, Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]. Length = 112 Score = 32.7 bits (74), Expect = 0.20 Identities = 14/57 (24%), Positives = 30/57 (52%), Gaps = 4/57 (7%) Query: 1 MKKADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVL 57 M + + +LG+ + ++K A R + + HPD+ + A ++I+EA ++L Sbjct: 53 MSRREAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSPYLA----SKINEAKDLL 105 >gnl|CDD|153390 cd07321, Extradiol_Dioxygenase_3A_like, Subunit A of Class III extradiol dioxygenases. Extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. There are two major groups of dioxygenases according to the cleavage site of the aromatic ring. Intradiol enzymes cleave the aromatic ring between two hydroxyl groups, whereas extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Extradiol dioxygenases can be divided into three classes. Class I and II enzymes are evolutionary related and show sequence similarity, with the two domain class II enzymes evolving from the class I enzyme through gene duplication. Class III enzymes are different in sequence and structure and usually have two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents subunit A of class III extradiol dioxygenase enzymes. The A subunit is the smaller, non-catalytic subunit. Enzymes that belong to this family include Protocatechuate 4,5-dioxygenase (LigAB) A subunit, 2'-aminobiphenyl-2,3-diol 1,2-dioxygenase (CarB) A subunit, Gallate Dioxygenase and proteins of unknown function. Length = 77 Score = 32.3 bits (74), Expect = 0.23 Identities = 15/63 (23%), Positives = 18/63 (28%), Gaps = 12/63 (19%) Query: 40 DPEAKEKFAQISEAY-----------EVLRDPQKRALYDQGGHEALEYGAQSQGAGGFGA 88 PE KE+F EA L ALY G + L + G A Sbjct: 15 KPEVKERFKADPEAVLAEYGLTPEEKAALLARDVGALYVLGVNPMLLMHF-AIRLGIPSA 73 Query: 89 GMY 91 Sbjct: 74 EYS 76 >gnl|CDD|146940 pfam04546, Sigma70_ner, Sigma-70, non-essential region. The domain is found in the primary vegetative sigma factor. The function of this domain is unclear and can be removed without loss of function. Length = 210 Score = 30.6 bits (70), Expect = 0.77 Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%) Query: 40 DPE-AKEKFAQISEAYEVLRD 59 DPE A+E+FA++ E YE R Sbjct: 75 DPEEARERFAELREQYEKTRK 95 >gnl|CDD|31304 COG1107, COG1107, Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]. Length = 715 Score = 30.3 bits (68), Expect = 0.85 Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 15/72 (20%) Query: 152 VKCSTCSGSGAKPGTNPMDCNICNGSGRVYTTAQSFFSIERACSTCRG------SGQIIP 205 KC C G G +C +C+G+G F + + R S +I Sbjct: 3 KKCPECGGKGKIVVGEE-ECPVCHGTGFSDD-----FDPKGVANLSRETVDLFASFEI-- 54 Query: 206 HPCSKCHGQGRV 217 PC KC G+G V Sbjct: 55 -PCPKCRGKGTV 65 >gnl|CDD|38402 KOG3192, KOG3192, KOG3192, Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]. Length = 168 Score = 30.0 bits (67), Expect = 1.1 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 6/48 (12%) Query: 19 RQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDPQKRALY 66 ++L L+ DQ A E+ A++++AY+ L+DP RA Y Sbjct: 36 KKLHPDRPGLSFAGDTDQ------ASEQSAELNKAYDTLKDPLARARY 77 >gnl|CDD|48533 cd02984, TRX_PICOT, TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.. Length = 97 Score = 29.0 bits (65), Expect = 2.2 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%) Query: 20 QLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEV 56 Q+ F LA + P EA E+ +ISE +E+ Sbjct: 31 QMNQVFEELAKEAFPSVLFLSIEA-EELPEISEKFEI 66 >gnl|CDD|36526 KOG1312, KOG1312, KOG1312, DHHC-type Zn-finger proteins [General function prediction only]. Length = 341 Score = 28.4 bits (63), Expect = 3.1 Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 3/28 (10%) Query: 148 FPTAVKCSTCSGSGAKPGTNPMDCNICN 175 FP VKCSTC KP + C+ICN Sbjct: 145 FPKNVKCSTC--KIRKPARSK-HCSICN 169 >gnl|CDD|31264 COG1064, AdhP, Zn-dependent alcohol dehydrogenases [General function prediction only]. Length = 339 Score = 28.2 bits (63), Expect = 3.5 Identities = 18/72 (25%), Positives = 25/72 (34%), Gaps = 8/72 (11%) Query: 230 GVDDGTRIRLSGEGGAGVYG-------GAPGDLYIFISVKKHQFFKRDGADLYCTVPISI 282 V G + + G GG G GA + I S +K + K+ GAD S Sbjct: 163 NVKPGKWVAVVGAGGLGHMAVQYAKAMGAE-VIAITRSEEKLELAKKLGADHVINSSDSD 221 Query: 283 VTVAMGGTFDVA 294 A+ D Sbjct: 222 ALEAVKEIADAI 233 >gnl|CDD|147197 pfam04906, Tweety, Tweety. The tweety (tty) gene has not been characterized at the protein level. However, it is thought to form a membrane protein with five potential membrane-spanning regions. A number of potential functions have been suggested in. Length = 406 Score = 28.1 bits (63), Expect = 3.9 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 14/68 (20%) Query: 85 GFGAGMYGNSDFSELFEGIFGGIMGSGRSYKR---------SSSTGEAGADLRYNLEISL 135 G G YGNS+ + +G++ + S R+ S +T L +L L Sbjct: 76 AIGVGFYGNSETN---DGVY-QLTYSLRNANHTVSGIDNLVSDTTNSLNETLEQHLT-RL 130 Query: 136 EEAFSGKT 143 EE F+ +T Sbjct: 131 EEIFAKRT 138 >gnl|CDD|48580 cd03031, GRX_GRX_like, Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.. Length = 147 Score = 28.3 bits (63), Expect = 3.9 Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 6/48 (12%) Query: 154 CSTCSGSGAKPGTNPMDCNICNGSGRVYTTAQSFFSIERACSTCRGSG 201 C C G+ P C+ CNGS +V+ + C C +G Sbjct: 102 CEGCGGARFVP------CSECNGSCKVFAENATAAGGFLRCPECNENG 143 >gnl|CDD|173868 cd08503, PBP2_NikA_DppA_OppA_like_17, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction. Length = 460 Score = 27.5 bits (62), Expect = 7.0 Identities = 20/83 (24%), Positives = 26/83 (31%), Gaps = 23/83 (27%) Query: 1 MKKADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNR---NDPEAKEKFAQ-ISEAYEV 56 K F R D+ L A+RS A N +PE +E Sbjct: 368 WMKKPFSATYWGGRPTGDQMLSLAYRSGAP-----WNETHWANPEFDALLDAARAEL--- 419 Query: 57 LRDPQKRA---------LYDQGG 70 D KR L+D+GG Sbjct: 420 --DEAKRKELYAEMQQILHDEGG 440 >gnl|CDD|32035 COG1850, RbcL, Ribulose 1,5-bisphosphate carboxylase, large subunit [Carbohydrate transport and metabolism]. Length = 429 Score = 26.8 bits (59), Expect = 9.8 Identities = 10/36 (27%), Positives = 17/36 (47%) Query: 246 GVYGGAPGDLYIFISVKKHQFFKRDGADLYCTVPIS 281 V G GD ++ K FF++D A + P++ Sbjct: 316 TVVGKLEGDREDYVESDKEFFFEQDWAHIKPVFPVA 351 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.317 0.135 0.396 Gapped Lambda K H 0.267 0.0711 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 4,629,088 Number of extensions: 246610 Number of successful extensions: 756 Number of sequences better than 10.0: 1 Number of HSP's gapped: 682 Number of HSP's successfully gapped: 51 Length of query: 384 Length of database: 6,263,737 Length adjustment: 96 Effective length of query: 288 Effective length of database: 4,189,273 Effective search space: 1206510624 Effective search space used: 1206510624 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 58 (26.2 bits)