RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780638|ref|YP_003065051.1| molecular chaperone protein DnaJ [Candidatus Liberibacter asiaticus str. psy62] (384 letters) >3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein structure initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Length = 329 Score = 269 bits (689), Expect = 7e-73 Identities = 100/371 (26%), Positives = 162/371 (43%), Gaps = 68/371 (18%) Query: 1 MKKADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDP 60 M+ D+Y +LG+ + +KTA+R LA KYHPD + + +A+ KF ++EA+EVL+D Sbjct: 25 MELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVS-KENDAEAKFKDLAEAWEVLKDE 83 Query: 61 QKRALYDQGGHEALEYGAQSQGAGGFGAGMYGNSDFSELFEGIFGGIMGSGRSYKRSSST 120 Q+RA YDQ + G Q Y DF ++F +FG ++++R Sbjct: 84 QRRAEYDQLWQHRNDPGFGRQRQTHE--QSYSQQDFDDIFSSMFG-----QQAHQRRRQH 136 Query: 121 GEAGADLRYNLEISLEEAFSGKTVQIRFPTAVKCSTCSGSGAKPGTNPMDCNICNGSGRV 180 G DL + + LEE + + T + + N Sbjct: 137 AARGHDLEIEVAVFLEETLAE---------------------QTRTISYNLPVYNV---- 171 Query: 181 YTTAQSFFSIERACSTCRGSGQIIPHPCSKCHGQGRVSEEKLLSVNVPPGVDDGTRIRLS 240 G K L+V +P GV DG RIRL Sbjct: 172 -------------------------------FGMIESETPKTLNVKIPAGVVDGQRIRLK 200 Query: 241 GEGGAGVYGGAPGDLYIFISVKKHQFFKRDGADLYCTVPISIVTVAMGGTFDVATLDATH 300 G+G G GG GDL++ I + H F G +L +P++ A+G V TL + Sbjct: 201 GQGTPGENGGPNGDLWLVIHIAPHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKESI 260 Query: 301 SRVTIPEGTQTGKQFRLKGKGMPVINSGRKGDLYVQVQVETPQKLNKRQRELLEEFEQIS 360 +T+P G+Q G++ R+KGKG+ + GDL+ +++ P K +++ REL ++ Sbjct: 261 -LLTVPPGSQAGQRLRIKGKGLV--SKTHTGDLFAVIKIVMPTKPDEKARELWQQLAAAE 317 Query: 361 SQDNNPQSTGF 371 + +P+ T Sbjct: 318 A-SFDPRKTWG 327 >1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1 Length = 248 Score = 226 bits (576), Expect = 9e-60 Identities = 73/246 (29%), Positives = 114/246 (46%), Gaps = 9/246 (3%) Query: 116 RSSSTGEAGADLRYNLEISLEEAFSGKTVQIRFPTAVKCSTCSGSGAKPGTNPMDCNICN 175 + + G D+++ + SLEE + G+T ++ + C C G G K G C CN Sbjct: 3 QRPRGPQRGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGA-VKKCTSCN 61 Query: 176 GSGRVYTTAQSFF---SIERACSTCRGSGQIIPHPC--SKCHGQGRVSEEKLLSVNVPPG 230 G G + T Q + C C G+G II C+G+ +E K+L V+V PG Sbjct: 62 GQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVENERKILEVHVEPG 121 Query: 231 VDDGTRIRLSGEGGAGVYGGAPGDLYIFISVKKHQFFKRDGADLYCTVPISIVTVAMGGT 290 + DG RI GE PGD+ +S + H+ FKRDG DL I ++T GG Sbjct: 122 MKDGQRIVFKGEADQAPDVI-PGDVVFIVSERPHKSFKRDGDDLVYEAEIDLLTAIAGGE 180 Query: 291 FDVATLDATHSRVTIPEG--TQTGKQFRLKGKGMPVINSGRKGDLYVQVQVETPQKLNKR 348 F + + +V I G G + ++GKGMP+ G G+L ++ ++ P+ Sbjct: 181 FALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIKDPENHFTS 240 Query: 349 QRELLE 354 + L + Sbjct: 241 EENLKK 246 >3i38_A Putative chaperone DNAJ; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp} Length = 109 Score = 124 bits (313), Expect = 3e-29 Identities = 30/106 (28%), Positives = 56/106 (52%), Gaps = 4/106 (3%) Query: 264 HQFFKRDGADLYCTVPISIVTVAMGGTFDVATLDATHSRVTIPEGTQTGKQFRLKGKGMP 323 H F G +L +P++ A+G V TL + +T+P G+Q G++ R+KGKG+ Sbjct: 4 HPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKESI-LLTVPPGSQAGQRLRIKGKGLV 62 Query: 324 VINSGRKGDLYVQVQVETPQKLNKRQRELLEEFEQISSQDNNPQST 369 + GDL+ +++ P K +++ REL ++ + +P+ T Sbjct: 63 --SKTHTGDLFAVIKIVMPTKPDEKARELWQQLAAAEA-SFDPRKT 105 Score = 38.2 bits (89), Expect = 0.004 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%) Query: 223 LSVNVPPGVDDGTRIRLSGEGGAGVYGGAPGDLYIFISVK 262 + + VPPG G R+R+ G+G GDL+ I + Sbjct: 40 ILLTVPPGSQAGQRLRIKGKGLVS--KTHTGDLFAVIKIV 77 Score = 30.1 bits (68), Expect = 0.95 Identities = 7/23 (30%), Positives = 11/23 (47%) Query: 124 GADLRYNLEISLEEAFSGKTVQI 146 G +L L ++ EA G V + Sbjct: 11 GHNLEIVLPLAPWEAALGAKVTV 33 >2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II} Length = 180 Score = 120 bits (300), Expect = 7e-28 Identities = 51/161 (31%), Positives = 78/161 (48%), Gaps = 1/161 (0%) Query: 197 CRGSGQIIPHPCSKCHGQGRVSEEKLLSVNVPPGVDDGTRIRLSGEGGAGVYGGAPGDLY 256 G + I + +EE ++ V + PG DGT++ SGEG G +PGDL Sbjct: 18 YLGKRKKIKVTRKRFIEHKVRNEENIVEVEIKPGWKDGTKLTYSGEGDQESPGTSPGDLV 77 Query: 257 IFISVKKHQFFKRDGADLYCTVPISIVTVAMGGTFDVATLDATHSRVTIPEGTQTGKQFR 316 + I K H F RD L V I +V G T V TLD + ++ I E + Sbjct: 78 LIIQTKTHPRFTRDDCHLIMKVTIPLVRALTGFTCPVTTLDNRNLQIPIKEIVNPKTRKI 137 Query: 317 LKGKGMPVIN-SGRKGDLYVQVQVETPQKLNKRQRELLEEF 356 + +GMP+ N G+KGDL ++ + P+ L Q++L++E Sbjct: 138 VPNEGMPIKNQPGQKGDLILEFDICFPKSLTPEQKKLIKEA 178 >2qld_A DNAJ homolog subfamily B member 1; primarily beta sheets, chaperone; 2.70A {Homo sapiens} Length = 183 Score = 116 bits (291), Expect = 9e-27 Identities = 48/168 (28%), Positives = 83/168 (49%), Gaps = 3/168 (1%) Query: 189 SIERACSTCRGSGQIIPHPCSKCHGQGRVSEEKLLSVNVPPGVDDGTRIRLSGEGGAGVY 248 S+E S C +I H G+ +E+K+L++ V G +GT+I EG Sbjct: 14 SLEEIYSGCTKKMKI-SHKRLNPDGKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTSN 72 Query: 249 GGAPGDLYIFISVKKHQFFKRDGADLYCTVPISIVTVAMGGTFDVATLDATHSRVTIPEG 308 P D+ + K H FKRDG+D+ IS+ G T +V TLD V + Sbjct: 73 NI-PADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTIPVVFKDV 131 Query: 309 TQTGKQFRLKGKGMPVI-NSGRKGDLYVQVQVETPQKLNKRQRELLEE 355 + G + ++ G+G+P+ ++GDL ++ +V P+++ + R +LE+ Sbjct: 132 IRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQ 179 >1c3g_A Heat shock protein 40; beta sheets, short helices; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A Length = 170 Score = 109 bits (272), Expect = 1e-24 Identities = 41/146 (28%), Positives = 67/146 (45%), Gaps = 1/146 (0%) Query: 210 KCHGQGRVSEEKLLSVNVPPGVDDGTRIRLSGEGGAGVYGGAPGDLYIFISVKKHQFFKR 269 G SE+ + + + PG GT+I +G G L I K H FKR Sbjct: 25 GRKGPHGASEKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKR 84 Query: 270 DGADLYCTVPISIVTVAMGGTFDVATLDATHSRVTIPEGTQTGKQFRLKGKGMPVI-NSG 328 DG DL T+P+S +G + + T+D ++ + Q + G+GMP N Sbjct: 85 DGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQPVQPSQTSTYPGQGMPTPKNPS 144 Query: 329 RKGDLYVQVQVETPQKLNKRQRELLE 354 ++G+L V+ +V+ P LN Q+ ++ Sbjct: 145 QRGNLIVKYKVDYPISLNDAQKRAID 170 >2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, PSI-2, protein structure initiative; 1.86A {Caenorhabditis elegans} Length = 73 Score = 106 bits (265), Expect = 1e-23 Identities = 37/72 (51%), Positives = 54/72 (75%), Gaps = 3/72 (4%) Query: 1 MKKADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDP 60 +K+ +Y VLG+ +A+D +LK A+R +A+K+HPD+N P+ E+F QIS+AYEVL D Sbjct: 5 VKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKN---PDGAEQFKQISQAYEVLSDE 61 Query: 61 QKRALYDQGGHE 72 +KR +YDQGG E Sbjct: 62 KKRQIYDQGGEE 73 >1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1 Length = 79 Score = 103 bits (259), Expect = 6e-23 Identities = 40/77 (51%), Positives = 51/77 (66%), Gaps = 1/77 (1%) Query: 141 GKTVQIRFPTAVKCSTCSGSGAKPGTNPMDCNICNGSGRVYTTAQSFFSIERACSTCRGS 200 G T +IR PT +C C GSGAKPGT P C C+GSG+V Q FF++++ C C+G Sbjct: 1 GVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQV-QMRQGFFAVQQTCPHCQGR 59 Query: 201 GQIIPHPCSKCHGQGRV 217 G +I PC+KCHG GRV Sbjct: 60 GTLIKDPCNKCHGHGRV 76 Score = 29.5 bits (66), Expect = 1.2 Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 3/41 (7%) Query: 143 TVQIRFPTAVKCSTCSGSGAKPGTNPMDCNICNGSGRVYTT 183 Q F C C G G +P CN C+G GRV + Sbjct: 42 MRQGFFAVQQTCPHCQGRGTLI-KDP--CNKCHGHGRVERS 79 >1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 77 Score = 100 bits (250), Expect = 6e-22 Identities = 38/75 (50%), Positives = 57/75 (76%), Gaps = 2/75 (2%) Query: 1 MKKADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDP 60 M K D+YQ LG+ R A+D ++K A+R A++YHPD+N +P A+EKF +I+EAY+VL DP Sbjct: 1 MGK-DYYQTLGLARGASDEEIKRAYRRQALRYHPDKN-KEPGAEEKFKEIAEAYDVLSDP 58 Query: 61 QKRALYDQGGHEALE 75 +KR ++D+ G E L+ Sbjct: 59 RKREIFDRYGEEGLK 73 >1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A Length = 103 Score = 99.8 bits (248), Expect = 9e-22 Identities = 53/104 (50%), Positives = 71/104 (68%), Gaps = 2/104 (1%) Query: 3 KADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDPQK 62 K D+Y++LG+ + A +R+++ A++ LAMKYHPD+N+ D EA+ KF +I EAYEVL D QK Sbjct: 2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQK 61 Query: 63 RALYDQGGHEALEYGAQSQGAGGFGAGMYGNSDFSELFEGIFGG 106 RA YDQ GH A E G GGFG G + F ++F IFGG Sbjct: 62 RAAYDQYGHAAFE--QGGMGGGGFGGGADFSDIFGDVFGDIFGG 103 >1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 88 Score = 96.8 bits (241), Expect = 8e-21 Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 4/71 (5%) Query: 5 DFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPE-AKEKFAQISEAYEVLRDPQKR 63 + V+ + + K R L +K+HPD+N + + A E F + L +K+ Sbjct: 17 EVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRL---EKQ 73 Query: 64 ALYDQGGHEAL 74 A DQ A Sbjct: 74 AFLDQNADRAS 84 >2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 104 Score = 96.4 bits (239), Expect = 1e-20 Identities = 30/103 (29%), Positives = 44/103 (42%), Gaps = 1/103 (0%) Query: 124 GADLRYNLEISLEEAFSGKTVQIRFPTAVKCSTCSGSGAKPGTNPMDCNICNGSGRVYTT 183 G+ +E++ +A G + C C+G G +PGT C+ C GSG T Sbjct: 1 GSSGSSGMELTFNQAAKGVNKEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSGM-ETI 59 Query: 184 AQSFFSIERACSTCRGSGQIIPHPCSKCHGQGRVSEEKLLSVN 226 F + C C G G II PC C G G+ ++K + Sbjct: 60 NTGPFVMRSTCRRCGGRGSIIISPCVVCRGAGQAKQKKRSGPS 102 >1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae} Length = 121 Score = 96.2 bits (239), Expect = 1e-20 Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 3/105 (2%) Query: 267 FKRDGADLYCTVPISIVTVAMGGTFDVATLDATHSRVTIPEGTQT--GKQFRLKGKGMPV 324 FKRDG DL I ++T GG F + + +V I G G + ++GKGMP+ Sbjct: 2 FKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPI 61 Query: 325 INSGRKGDLYVQVQVETPQKLNKRQRELLEEFEQISSQDNNPQST 369 G G+L ++ ++ P+ + L++ E+I P Sbjct: 62 PKYGGYGNLIIKFTIKFPENHFTSEEN-LKKLEEILPPRIVPAIP 105 Score = 33.4 bits (76), Expect = 0.084 Identities = 13/59 (22%), Positives = 17/59 (28%), Gaps = 6/59 (10%) Query: 113 SYKRSSSTGEAGADLRYNLEISLEEAFSGKTVQIRFPTAVKCSTCSGSGAKPGTNPMDC 171 S+KR G DL Y EI L A +G + + G Sbjct: 1 SFKRD------GDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKV 53 >2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulator/viral protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Length = 174 Score = 92.3 bits (229), Expect = 2e-19 Identities = 17/102 (16%), Positives = 40/102 (39%), Gaps = 15/102 (14%) Query: 1 MKKADFYQVLGIDRNAT--DRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLR 58 + +LG++R+A ++ A+ ++HPD+ ++ EK +++ Y+ + Sbjct: 8 EESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE----EKMKKMNTLYKKME 63 Query: 59 DPQKRALYDQGGHEALEYGAQSQGAGGFGAGMYGNSDFSELF 100 D K A +G F + + N ++ Sbjct: 64 DGVKYAHQPD-------FGGFWDATEVFASSL--NPGVDAIY 96 >1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J Length = 182 Score = 90.5 bits (224), Expect = 6e-19 Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 3/65 (4%) Query: 5 DFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPE---AKEKFAQISEAYEVLRDPQ 61 ++ +G+ T Q+K +R + HPD+ P AK F ++++A+ + Sbjct: 118 TKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQG 177 Query: 62 KRALY 66 ++ LY Sbjct: 178 QKPLY 182 >1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 Length = 114 Score = 87.0 bits (215), Expect = 6e-18 Identities = 17/103 (16%), Positives = 38/103 (36%), Gaps = 7/103 (6%) Query: 2 KKADFYQVLGIDRNAT--DRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRD 59 + +LG++R+A ++ A+ ++HPD+ ++ EK +++ Y+ + D Sbjct: 6 ESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE----EKMKKMNTLYKKMED 61 Query: 60 PQKRALYDQGGHEALEYGAQSQGAGGFGAGMYGNSDFSELFEG 102 K A G + + + LF Sbjct: 62 GVKYAHQPDFGGFW-DATEIPTYGTDEWEQWWNAFNEENLFCS 103 >1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 Length = 79 Score = 84.6 bits (209), Expect = 3e-17 Identities = 9/71 (12%), Positives = 27/71 (38%), Gaps = 6/71 (8%) Query: 2 KKADFYQVLGIDRN--ATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRD 59 K ++L + R +++ A++ ++ HPD+ + +++ + + Sbjct: 9 DKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSH----ALMQELNSLWGTFKT 64 Query: 60 PQKRALYDQGG 70 + GG Sbjct: 65 EVYNLRMNLGG 75 >2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99 Score = 84.3 bits (208), Expect = 4e-17 Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 2/87 (2%) Query: 1 MKKADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDP 60 + Y +LG+ AT Q+K A+ YHPD+N EA E+F +IS+AY VL Sbjct: 14 YSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSA 73 Query: 61 QKRALYDQGGHEALEYGAQSQGAGGFG 87 R YD+G + + G+G Sbjct: 74 TLRRKYDRGLLS--DEDLRGPGSGPSS 98 >1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 Length = 171 Score = 84.1 bits (207), Expect = 5e-17 Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 7/74 (9%) Query: 5 DFYQVLGIDRNAT--DRQLKTAFRSLAMKYHPDQNRNDPEAKEK-----FAQISEAYEVL 57 D++ + G+ + L F+ L +YHPD+ + +A++ A I++A++ L Sbjct: 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61 Query: 58 RDPQKRALYDQGGH 71 R P RA Y H Sbjct: 62 RHPLMRAEYLLSLH 75 >2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} Length = 92 Score = 82.5 bits (203), Expect = 1e-16 Identities = 37/80 (46%), Positives = 52/80 (65%), Gaps = 3/80 (3%) Query: 1 MKKADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDP 60 +K+ Y +LG+ +A +++LK +R A+KYHPD+ D E KF +ISEA+E+L DP Sbjct: 5 VKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTE---KFKEISEAFEILNDP 61 Query: 61 QKRALYDQGGHEALEYGAQS 80 QKR +YDQ G EA G S Sbjct: 62 QKREIYDQYGLEAARSGGPS 81 >1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 Length = 94 Score = 81.6 bits (201), Expect = 3e-16 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 7/77 (9%) Query: 1 MKKADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEK------FAQISEAY 54 +KK D+Y +LG D +A LK ++ L + YHPD+ D A F +I +A+ Sbjct: 14 LKK-DWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAW 72 Query: 55 EVLRDPQKRALYDQGGH 71 ++L + + + YD Sbjct: 73 KILGNEETKKKYDLQRS 89 >2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88 Score = 80.5 bits (198), Expect = 5e-16 Identities = 38/88 (43%), Positives = 56/88 (63%), Gaps = 4/88 (4%) Query: 2 KKADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDPQ 61 +Y +LG+ ++A++RQ+K AF LAMKYHPD+N++ P+A+ KF +I+EAYE L D Sbjct: 5 SSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKS-PDAEAKFREIAEAYETLSDAN 63 Query: 62 KRALYDQGGHEALEYGAQSQGAGGFGAG 89 +R YD GH A +G G +G Sbjct: 64 RRKEYDTLGHSAFT---SGKGQSGPSSG 88 >2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} Length = 109 Score = 80.2 bits (197), Expect = 7e-16 Identities = 36/106 (33%), Positives = 56/106 (52%), Gaps = 11/106 (10%) Query: 1 MKKADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDP 60 Y VLG+D+NAT +K ++R LA+KYHPD+N ++PEA +KF +I+ A+ +L D Sbjct: 14 TSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDA 73 Query: 61 QKRALYDQGGHEALEYGAQSQGAGGFGAGMYGNSDFSELFEGIFGG 106 KR +YD+ G G + A +G + + F Sbjct: 74 TKRNIYDKYGSL-----------GLYVAEQFGEENVNTYFVSGPSS 108 >2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphorylation; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A Length = 92 Score = 79.5 bits (196), Expect = 1e-15 Identities = 12/58 (20%), Positives = 26/58 (44%), Gaps = 3/58 (5%) Query: 5 DFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPE---AKEKFAQISEAYEVLRD 59 ++ +G+ T Q+K +R + HP + P AK F ++++A+ + Sbjct: 34 TKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91 >2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 92 Score = 79.4 bits (195), Expect = 1e-15 Identities = 37/87 (42%), Positives = 59/87 (67%), Gaps = 4/87 (4%) Query: 4 ADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAK-EKFAQISEAYEVLRDPQK 62 A++Y+VLG+ +A+ +K A+R LA+++HPD+N ++ E +KF +SEAYEVL D +K Sbjct: 9 ANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKK 68 Query: 63 RALYDQGGHEALEYGAQSQGAGGFGAG 89 R+LYD+ G ++ G GA G +G Sbjct: 69 RSLYDRAGCDSWRAGG---GASGPSSG 92 >2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 112 Score = 78.3 bits (192), Expect = 2e-15 Identities = 26/94 (27%), Positives = 45/94 (47%) Query: 1 MKKADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDP 60 D+Y +LG D ++ Q+ F+ A++ HPD++ +P+A E F ++ +A E+L + Sbjct: 17 EDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNE 76 Query: 61 QKRALYDQGGHEALEYGAQSQGAGGFGAGMYGNS 94 + RA YD + Q A G S Sbjct: 77 ESRARYDHWRRSQMSMPFQQWEALNDSVKTSGPS 110 >3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae} Length = 174 Score = 77.9 bits (191), Expect = 4e-15 Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 7/74 (9%) Query: 5 DFYQVLGIDRNAT--DRQLKTAFRSLAMKYHPDQNRNDPE-----AKEKFAQISEAYEVL 57 +++++ G+ L + FR+L ++HPD E A ++ AQI++AY+ L Sbjct: 5 NYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTL 64 Query: 58 RDPQKRALYDQGGH 71 +DP +RA Y Sbjct: 65 KDPLRRAEYLLSLQ 78 >1m1q_A Small tetraheme cytochrome C; atomic structure of oxidized tetraheme cytochrome C, electron transport; HET: HEM; 0.97A {Shewanella oneidensis mr-1} SCOP: a.138.1.3 PDB: 1m1p_A* 1m1r_A* Length = 91 Score = 77.1 bits (189), Expect = 5e-15 Identities = 15/75 (20%), Positives = 19/75 (25%), Gaps = 6/75 (8%) Query: 151 AVKCSTCSGSG---AKPGTNPMDCNICNGSGRVYTTAQSFFSIERACSTC---RGSGQII 204 + C +C G A C C+G C+ C Sbjct: 12 SGGCESCHKDGTPSADGAFEFAQCQSCHGKLSEMDAVHKPHDGNLVCADCHAVHDMNVGQ 71 Query: 205 PHPCSKCHGQGRVSE 219 C CH GR S Sbjct: 72 KPTCESCHDDGRTSA 86 Score = 27.0 bits (59), Expect = 6.8 Identities = 7/38 (18%), Positives = 10/38 (26%) Query: 143 TVQIRFPTAVKCSTCSGSGAKPGTNPMDCNICNGSGRV 180 V + C+ C C C+ GR Sbjct: 47 AVHKPHDGNLVCADCHAVHDMNVGQKPTCESCHDDGRT 84 >3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana} Length = 106 Score = 76.9 bits (189), Expect = 7e-15 Identities = 7/62 (11%), Positives = 24/62 (38%), Gaps = 7/62 (11%) Query: 5 DFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDP-------EAKEKFAQISEAYEVL 57 ++ + + ++ +++ + HPD+ + A++ F + EA++ Sbjct: 41 SGWKPVPLMDMIEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHF 100 Query: 58 RD 59 Sbjct: 101 NT 102 >3bvo_A CO-chaperone protein HSCB, mitochondrial precursor; structural genomics medical relevance, protein structure initiative, PSI-2; 3.00A {Homo sapiens} Length = 207 Score = 76.4 bits (187), Expect = 1e-14 Identities = 15/79 (18%), Positives = 31/79 (39%), Gaps = 7/79 (8%) Query: 2 KKADFYQVLGIDR--NATDRQLKTAFRSLAMKYHPDQNRNDPEAKE-----KFAQISEAY 54 D++ ++ +R +L+ ++ L HPD + ++ +++AY Sbjct: 41 PTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAY 100 Query: 55 EVLRDPQKRALYDQGGHEA 73 + L P R LY H Sbjct: 101 KTLLAPLSRGLYLLKLHGI 119 >2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 82 Score = 75.2 bits (184), Expect = 3e-14 Identities = 31/69 (44%), Positives = 48/69 (69%), Gaps = 1/69 (1%) Query: 4 ADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEA-KEKFAQISEAYEVLRDPQK 62 D+Y+VL + R A+ +K A+R LA+K+HPD+N + E + +F Q++EAYEVL D +K Sbjct: 9 VDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKK 68 Query: 63 RALYDQGGH 71 R +YD+ G Sbjct: 69 RDIYDRYGS 77 >2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} Length = 88 Score = 74.7 bits (183), Expect = 4e-14 Identities = 30/67 (44%), Positives = 45/67 (67%), Gaps = 1/67 (1%) Query: 5 DFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDPQKRA 64 D Y+VLG+ R A+ +K A++ LA ++HPD DP A+++F QIS+AYE+L + +KR Sbjct: 18 DPYRVLGVSRTASQADIKKAYKKLAREWHPD-KNKDPGAEDRFIQISKAYEILSNEEKRT 76 Query: 65 LYDQGGH 71 YD G Sbjct: 77 NYDHYGS 83 >2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79 Score = 74.4 bits (182), Expect = 4e-14 Identities = 38/71 (53%), Positives = 52/71 (73%) Query: 1 MKKADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDP 60 D+YQ+LG+ RNA+ +++K A+ LA KYHPD N++DP+AKEKF+Q++EAYEVL D Sbjct: 4 GSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDE 63 Query: 61 QKRALYDQGGH 71 KR YD G Sbjct: 64 VKRKQYDAYGS 74 >2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, protein structure initiative; 1.68A {Caenorhabditis elegans} Length = 109 Score = 73.9 bits (181), Expect = 6e-14 Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 4/84 (4%) Query: 3 KADFYQVLGIDRNATDRQ-LKTAFRSLAMKYHPDQNRNDPEAKE---KFAQISEAYEVLR 58 + Y VL ++R D+Q L A+R+LA K+HPD+ +N E +F I+ AYE L+ Sbjct: 14 LENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLK 73 Query: 59 DPQKRALYDQGGHEALEYGAQSQG 82 D + + YD + Sbjct: 74 DDEAKTNYDYYLDHPDQRFYNYYQ 97 >2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78 Score = 69.4 bits (169), Expect = 1e-12 Identities = 34/71 (47%), Positives = 45/71 (63%), Gaps = 1/71 (1%) Query: 1 MKKADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDP 60 D+Y++LG+ R A+D LK A+R LA+K+HPD+N P A E F I AY VL +P Sbjct: 4 GSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHA-PGATEAFKAIGTAYAVLSNP 62 Query: 61 QKRALYDQGGH 71 +KR YDQ G Sbjct: 63 EKRKQYDQFGS 73 >2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Length = 71 Score = 67.6 bits (165), Expect = 4e-12 Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 5/64 (7%) Query: 1 MKKADFYQVLGIDRNATDR-QLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRD 59 M + Q+L + N + +LK R + + HPD+ + +I+EA + L Sbjct: 11 MNSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSP----FLATKINEAKDFLEK 66 Query: 60 PQKR 63 Sbjct: 67 RGIS 70 >2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Length = 65 Score = 43.8 bits (103), Expect = 6e-05 Identities = 8/66 (12%), Positives = 23/66 (34%), Gaps = 7/66 (10%) Query: 1 MKKADFYQVLGIDR---NATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVL 57 M + ++L I+ + ++ F L ++ + +++ A E L Sbjct: 1 MTLDESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGSF----YLQSKVYRAAERL 56 Query: 58 RDPQKR 63 + + Sbjct: 57 KWELAQ 62 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 40.7 bits (95), Expect = 6e-04 Identities = 87/473 (18%), Positives = 133/473 (28%), Gaps = 215/473 (45%) Query: 27 SLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDP-QKR---ALYD--QGGHE---ALEYG 77 +LA K + + + KE A + + P K+ AL+ G+ A+ +G Sbjct: 103 ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI-FG 161 Query: 78 AQSQGAGGFGAGMYGNSD--FSELFEGIFGGIMGSGRSYK-------RSSSTGEAGADLR 128 Q GN+D F EL + ++ ++Y + S A+ Sbjct: 162 GQ------------GNTDDYFEELRD-LY-------QTYHVLVGDLIKFS------AETL 195 Query: 129 YNLEISLEEAFS---GK---------------------TVQIRFPT---------AVKCS 155 L I + ++ I P V Sbjct: 196 SEL-IRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVV--- 251 Query: 156 TCSGSGAKPGTNPMDCNICNGS-----GRVYTTA-------QSFFSIERACST------C 197 T G PG + + G+ G V A +SFF R T Sbjct: 252 TAKLLGFTPGE--LRSYLK-GATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGV 308 Query: 198 RGSGQIIPH----PC----SKCHGQGRVSEEKLLSV-NVP-PGVD---DGT--------R 236 R + P+ P S + +G S +LS+ N+ V + T + Sbjct: 309 R-CYEAYPNTSLPPSILEDSLENNEGVPS--PMLSISNLTQEQVQDYVNKTNSHLPAGKQ 365 Query: 237 IRLSGEGGAG--VYGGAPGDLY-------------------IFISVKK----HQF----- 266 + +S GA V G P LY I S +K ++F Sbjct: 366 VEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVAS 425 Query: 267 -F------------KRD---------GADL----YCT--------VPISIVT--VAMGGT 290 F +D D+ Y T + SI V Sbjct: 426 PFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIR 485 Query: 291 FDV----AT-LDATH---------SRVTIPEGTQTGKQFRLK-GKGMPVINSG 328 V T ATH S + G T R K G G+ VI +G Sbjct: 486 LPVKWETTTQFKATHILDFGPGGASGL----GVLTH---RNKDGTGVRVIVAG 531 >3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae} Length = 197 Score = 37.6 bits (87), Expect = 0.005 Identities = 12/57 (21%), Positives = 18/57 (31%), Gaps = 24/57 (42%) Query: 188 FSIERACSTCRG----------SGQIIPHPCSKCHGQGRVSEEKLLSVNVPPGVDDG 234 +I C C+ G ++ C+ C G V +KL VD Sbjct: 18 LNIVLTCPECKVYPPKIVERFSEGDVV---CALC---GLVLSDKL--------VDTR 60 >2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibitory protein; transcription regulation, Trp RNA-binding attenuation protein; 2.8A {Bacillus subtilis} PDB: 2zp8_E* 2zp9_C* Length = 53 Score = 35.4 bits (81), Expect = 0.024 Identities = 11/26 (42%), Positives = 15/26 (57%) Query: 190 IERACSTCRGSGQIIPHPCSKCHGQG 215 +E AC C +G+I PC C G+G Sbjct: 8 LEVACPKCERAGEIEGTPCPACSGKG 33 >3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) sequence RTPA; anti-trap, tryptophan RNA-binding attenuation protein; 2.06A {Bacillus licheniformis} PDB: 3ld0_A Length = 53 Score = 35.4 bits (81), Expect = 0.024 Identities = 13/26 (50%), Positives = 16/26 (61%) Query: 190 IERACSTCRGSGQIIPHPCSKCHGQG 215 +E C C GSG+ P PC KC G+G Sbjct: 8 LETTCPNCNGSGREEPEPCPKCLGKG 33 >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} Length = 336 Score = 33.8 bits (77), Expect = 0.066 Identities = 18/111 (16%), Positives = 27/111 (24%), Gaps = 28/111 (25%) Query: 16 ATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDPQKRALYDQGGHEALE 75 + + FR L KY + N + I+E Y Sbjct: 254 SVQKGSPDLFRQLKSKYEANLNELNGIWDTALELIAEMY--------------------- 292 Query: 76 YGAQSQGAGGFGAGMYGNSDFSELFEGIFGGIMGSGRSYKRSSSTGEAGAD 126 +G Q M LF S + +R + G D Sbjct: 293 FGIQRPRQSNPLLDM-----MGSLFXXXXXA--PSKAALRRIDTPAAEGLD 336 >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* Length = 842 Score = 31.7 bits (71), Expect = 0.27 Identities = 11/31 (35%), Positives = 14/31 (45%) Query: 174 CNGSGRVYTTAQSFFSIERACSTCRGSGQII 204 G G VY S + E AC C G G++ Sbjct: 131 PPGQGIVYAEGFSPNTPEGACPECHGLGRVY 161 >2cvc_A Cytochrome CC3, high-molecular-weight cytochrome C precursor; electron transport; HET: HEM; 2.00A {Desulfovibrio vulgaris} SCOP: a.138.1.1 PDB: 1gws_A* 1h29_A* Length = 545 Score = 31.6 bits (69), Expect = 0.32 Identities = 11/71 (15%), Positives = 17/71 (23%), Gaps = 7/71 (9%) Query: 150 TAVKCSTCSGSGAKPGTNPMDCNICNG---SGRVYTTAQSFFSIERACSTC---RGSGQI 203 C C + P C C+G + + C C + Sbjct: 473 KGTLCQGCH-HNSPASLTPPKCASCHGKPFDADRGDRPGLKAAYHQQCMGCHDRMKIEKP 531 Query: 204 IPHPCSKCHGQ 214 C CH + Sbjct: 532 ANTACVDCHKE 542 >2k3v_A Tetraheme cytochrome C-type; multihaem cytochromes, redox proteins, electron transport, iron, metal-binding, periplasm, transport; HET: HEM; NMR {Shewanella frigidimarina} Length = 86 Score = 31.3 bits (70), Expect = 0.38 Identities = 14/75 (18%), Positives = 20/75 (26%), Gaps = 6/75 (8%) Query: 151 AVKCSTCSGSGAKPGTNPMD---CNICNGSGRVYTTAQSFFSIERACSTC-RGSGQIIPH 206 C C G + C C+GS C+ C + Sbjct: 12 MGGCENCHADGEPSKDGAYEFEQCQSCHGSLAEMDDNHKPHDGLLMCADCHAPHEAKVGE 71 Query: 207 P--CSKCHGQGRVSE 219 C CH GR ++ Sbjct: 72 KPTCDTCHDDGRTAK 86 >2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina} Length = 167 Score = 30.0 bits (67), Expect = 0.98 Identities = 9/77 (11%), Positives = 21/77 (27%) Query: 132 EISLEEAFSGKTVQIRFPTAVKCSTCSGSGAKPGTNPMDCNICNGSGRVYTTAQSFFSIE 191 ++++ E F+GK + S + G + A + + Sbjct: 22 KVNMAELFAGKKGVLFAVPGAFTPGSSKTHLPGYVEQAAAIHGKGVDIIACMAVNDSFVM 81 Query: 192 RACSTCRGSGQIIPHPC 208 A G+ + Sbjct: 82 DAWGKAHGADDKVQMLA 98 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 28.8 bits (63), Expect = 2.3 Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 6/34 (17%) Query: 343 QKLNKRQRELLEEFEQISSQDNNPQSTGFFARMK 376 Q L K Q L ++ + D+ P + A M+ Sbjct: 20 QALKKLQASL-----KLYADDSAP-ALAIKATME 47 >3k51_B Decoy receptor 3; DCR3, TL1A, TNF, TNFR, immunity, cytokine, D bond, glycoprotein, membrane, secreted, signal-anchor, transmembrane, apoptosis; 2.45A {Homo sapiens} Length = 176 Score = 28.2 bits (62), Expect = 3.3 Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 6/63 (9%) Query: 154 CSTCS-GSGAK---PGTNPMDCNICNGSGRVYTTAQSFFSIERACSTCRGSGQIIPHPCS 209 C+ C G+ + +P C C YT ++ R C+ G + C Sbjct: 22 CAQCPPGTFVQRPCRRDSPTTCGPC-PPRH-YTQFWNYLERCRYCNVLCGEREEEARACH 79 Query: 210 KCH 212 H Sbjct: 80 ATH 82 >3me4_A Tumor necrosis factor receptor superfamily member; RANK, rankl, rankl-RANK complex, tnfsf11, tnfrsf11A, TNF SUP signaling protein; 2.01A {Mus musculus} PDB: 3me2_R Length = 216 Score = 28.0 bits (61), Expect = 3.4 Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 8/65 (12%) Query: 153 KCSTCS-GSGAK-PGTNPMD--CNIC-NGSGRVYTTAQSFFSIERACSTCRGSGQIIPHP 207 + + C+ G GA+ P D C C G ++ S + + C G++ H Sbjct: 128 RNTECAPGFGAQHPLQLNKDTVCTPCLLGF---FSDVFSSTDKCKPWTNCTLLGKLEAHQ 184 Query: 208 CSKCH 212 + Sbjct: 185 GTTES 189 >2ahx_A P180ERBB4, receptor tyrosine-protein kinase ERBB-4; X-RAY crystallography, neuregulins, heparin-binding, cell cycle,signaling protein; HET: NAG NDG; 2.40A {Homo sapiens} Length = 617 Score = 28.1 bits (61), Expect = 3.5 Identities = 15/68 (22%), Positives = 20/68 (29%), Gaps = 5/68 (7%) Query: 153 KCSTCSGSGAKPG-----TNPMDCNICNGSGRVYTTAQSFFSIERACSTCRGSGQIIPHP 207 CS+ G P IC S +Y F + C C + + Sbjct: 482 LCSSDGCWGPGPDQCLSCRRFSRGRICIESCNLYDGEFREFENDSICVECDPQCEKMEDG 541 Query: 208 CSKCHGQG 215 CHG G Sbjct: 542 LLTCHGPG 549 >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae YJM789} Length = 814 Score = 27.5 bits (60), Expect = 4.9 Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 1/56 (1%) Query: 22 KTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDPQKRALYDQGGHEALEYG 77 + A+ PDQ++ E K Q++ A ++L D + G +L+ Sbjct: 641 GQEYYEEALNISPDQDQK-FELALKVGQLTLARDLLTDESAEMKWRALGDASLQRF 695 >3isq_A 4-hydroxyphenylpyruvate dioxygenase; tyrosine metabolism, acetylation, disease mutation, iron, mental retardation, metal-binding, oxidoreductase; 1.75A {Homo sapiens} PDB: 1sqi_A* Length = 393 Score = 27.0 bits (59), Expect = 8.6 Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 5/25 (20%) Query: 79 QSQGAGGFGAGMYGNSDFSELFEGI 103 Q GFGAG +F+ LF+ Sbjct: 345 QRHNHQGFGAG-----NFNSLFKAF 364 >2uwi_A CRME protein; receptor, poxvirus TNF receptor, receptor immunomodulator, TNF alpha receptor; 2.0A {Vaccinia virus} Length = 142 Score = 26.6 bits (57), Expect = 9.0 Identities = 10/62 (16%), Positives = 21/62 (33%), Gaps = 2/62 (3%) Query: 154 CSTC-SGSGAKPGTNPMDCNICNGSGRV-YTTAQSFFSIERACSTCRGSGQIIPHPCSKC 211 C C G+ + + IC +T+ + +C G+ ++ PC+ Sbjct: 17 CKLCKPGTYSDHRCDKYSDTICGHCPSDTFTSIYNRSPWCHSCRGPCGTNRVEVTPCTPT 76 Query: 212 HG 213 Sbjct: 77 TN 78 >1sp8_A 4-hydroxyphenylpyruvate dioxygenase; oxidoreductase; 2.00A {Zea mays} SCOP: d.32.1.3 d.32.1.3 Length = 418 Score = 26.7 bits (58), Expect = 9.0 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 5/25 (20%) Query: 79 QSQGAGGFGAGMYGNSDFSELFEGI 103 Q G GGFG G +FS+LF+ I Sbjct: 388 QKGGCGGFGKG-----NFSQLFKSI 407 >2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90 Score = 26.7 bits (58), Expect = 9.4 Identities = 11/32 (34%), Positives = 20/32 (62%) Query: 5 DFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQ 36 D + +LG+ A+ ++ A+R LA+ HPD+ Sbjct: 28 DSWDMLGVKPGASRDEVNKAYRKLAVLLHPDK 59 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.317 0.135 0.396 Gapped Lambda K H 0.267 0.0492 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 3,415,737 Number of extensions: 167964 Number of successful extensions: 711 Number of sequences better than 10.0: 1 Number of HSP's gapped: 635 Number of HSP's successfully gapped: 80 Length of query: 384 Length of database: 5,693,230 Length adjustment: 94 Effective length of query: 290 Effective length of database: 3,414,294 Effective search space: 990145260 Effective search space used: 990145260 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 57 (26.3 bits)