RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780638|ref|YP_003065051.1| molecular chaperone protein
DnaJ [Candidatus Liberibacter asiaticus str. psy62]
(384 letters)
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics,
PSI-2, protein structure initiative; 2.90A {Klebsiella
pneumoniae subsp} PDB: 2kqx_A
Length = 329
Score = 269 bits (689), Expect = 7e-73
Identities = 100/371 (26%), Positives = 162/371 (43%), Gaps = 68/371 (18%)
Query: 1 MKKADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDP 60
M+ D+Y +LG+ + +KTA+R LA KYHPD + + +A+ KF ++EA+EVL+D
Sbjct: 25 MELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVS-KENDAEAKFKDLAEAWEVLKDE 83
Query: 61 QKRALYDQGGHEALEYGAQSQGAGGFGAGMYGNSDFSELFEGIFGGIMGSGRSYKRSSST 120
Q+RA YDQ + G Q Y DF ++F +FG ++++R
Sbjct: 84 QRRAEYDQLWQHRNDPGFGRQRQTHE--QSYSQQDFDDIFSSMFG-----QQAHQRRRQH 136
Query: 121 GEAGADLRYNLEISLEEAFSGKTVQIRFPTAVKCSTCSGSGAKPGTNPMDCNICNGSGRV 180
G DL + + LEE + + T + + N
Sbjct: 137 AARGHDLEIEVAVFLEETLAE---------------------QTRTISYNLPVYNV---- 171
Query: 181 YTTAQSFFSIERACSTCRGSGQIIPHPCSKCHGQGRVSEEKLLSVNVPPGVDDGTRIRLS 240
G K L+V +P GV DG RIRL
Sbjct: 172 -------------------------------FGMIESETPKTLNVKIPAGVVDGQRIRLK 200
Query: 241 GEGGAGVYGGAPGDLYIFISVKKHQFFKRDGADLYCTVPISIVTVAMGGTFDVATLDATH 300
G+G G GG GDL++ I + H F G +L +P++ A+G V TL +
Sbjct: 201 GQGTPGENGGPNGDLWLVIHIAPHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKESI 260
Query: 301 SRVTIPEGTQTGKQFRLKGKGMPVINSGRKGDLYVQVQVETPQKLNKRQRELLEEFEQIS 360
+T+P G+Q G++ R+KGKG+ + GDL+ +++ P K +++ REL ++
Sbjct: 261 -LLTVPPGSQAGQRLRIKGKGLV--SKTHTGDLFAVIKIVMPTKPDEKARELWQQLAAAE 317
Query: 361 SQDNNPQSTGF 371
+ +P+ T
Sbjct: 318 A-SFDPRKTWG 327
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5;
beta-strands, chaperone, heat shock, mitochondrion;
2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1
g.54.1.1
Length = 248
Score = 226 bits (576), Expect = 9e-60
Identities = 73/246 (29%), Positives = 114/246 (46%), Gaps = 9/246 (3%)
Query: 116 RSSSTGEAGADLRYNLEISLEEAFSGKTVQIRFPTAVKCSTCSGSGAKPGTNPMDCNICN 175
+ + G D+++ + SLEE + G+T ++ + C C G G K G C CN
Sbjct: 3 QRPRGPQRGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGA-VKKCTSCN 61
Query: 176 GSGRVYTTAQSFF---SIERACSTCRGSGQIIPHPC--SKCHGQGRVSEEKLLSVNVPPG 230
G G + T Q + C C G+G II C+G+ +E K+L V+V PG
Sbjct: 62 GQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVENERKILEVHVEPG 121
Query: 231 VDDGTRIRLSGEGGAGVYGGAPGDLYIFISVKKHQFFKRDGADLYCTVPISIVTVAMGGT 290
+ DG RI GE PGD+ +S + H+ FKRDG DL I ++T GG
Sbjct: 122 MKDGQRIVFKGEADQAPDVI-PGDVVFIVSERPHKSFKRDGDDLVYEAEIDLLTAIAGGE 180
Query: 291 FDVATLDATHSRVTIPEG--TQTGKQFRLKGKGMPVINSGRKGDLYVQVQVETPQKLNKR 348
F + + +V I G G + ++GKGMP+ G G+L ++ ++ P+
Sbjct: 181 FALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIKDPENHFTS 240
Query: 349 QRELLE 354
+ L +
Sbjct: 241 EENLKK 246
>3i38_A Putative chaperone DNAJ; structural genomics, PSI-2, protein
structure initiative, midwest center for structural
genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}
Length = 109
Score = 124 bits (313), Expect = 3e-29
Identities = 30/106 (28%), Positives = 56/106 (52%), Gaps = 4/106 (3%)
Query: 264 HQFFKRDGADLYCTVPISIVTVAMGGTFDVATLDATHSRVTIPEGTQTGKQFRLKGKGMP 323
H F G +L +P++ A+G V TL + +T+P G+Q G++ R+KGKG+
Sbjct: 4 HPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKESI-LLTVPPGSQAGQRLRIKGKGLV 62
Query: 324 VINSGRKGDLYVQVQVETPQKLNKRQRELLEEFEQISSQDNNPQST 369
+ GDL+ +++ P K +++ REL ++ + +P+ T
Sbjct: 63 --SKTHTGDLFAVIKIVMPTKPDEKARELWQQLAAAEA-SFDPRKT 105
Score = 38.2 bits (89), Expect = 0.004
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 223 LSVNVPPGVDDGTRIRLSGEGGAGVYGGAPGDLYIFISVK 262
+ + VPPG G R+R+ G+G GDL+ I +
Sbjct: 40 ILLTVPPGSQAGQRLRIKGKGLVS--KTHTGDLFAVIKIV 77
Score = 30.1 bits (68), Expect = 0.95
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 124 GADLRYNLEISLEEAFSGKTVQI 146
G +L L ++ EA G V +
Sbjct: 11 GHNLEIVLPLAPWEAALGAKVTV 33
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment);
malaria, structural genomics, structural genomics
consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Length = 180
Score = 120 bits (300), Expect = 7e-28
Identities = 51/161 (31%), Positives = 78/161 (48%), Gaps = 1/161 (0%)
Query: 197 CRGSGQIIPHPCSKCHGQGRVSEEKLLSVNVPPGVDDGTRIRLSGEGGAGVYGGAPGDLY 256
G + I + +EE ++ V + PG DGT++ SGEG G +PGDL
Sbjct: 18 YLGKRKKIKVTRKRFIEHKVRNEENIVEVEIKPGWKDGTKLTYSGEGDQESPGTSPGDLV 77
Query: 257 IFISVKKHQFFKRDGADLYCTVPISIVTVAMGGTFDVATLDATHSRVTIPEGTQTGKQFR 316
+ I K H F RD L V I +V G T V TLD + ++ I E +
Sbjct: 78 LIIQTKTHPRFTRDDCHLIMKVTIPLVRALTGFTCPVTTLDNRNLQIPIKEIVNPKTRKI 137
Query: 317 LKGKGMPVIN-SGRKGDLYVQVQVETPQKLNKRQRELLEEF 356
+ +GMP+ N G+KGDL ++ + P+ L Q++L++E
Sbjct: 138 VPNEGMPIKNQPGQKGDLILEFDICFPKSLTPEQKKLIKEA 178
>2qld_A DNAJ homolog subfamily B member 1; primarily beta sheets,
chaperone; 2.70A {Homo sapiens}
Length = 183
Score = 116 bits (291), Expect = 9e-27
Identities = 48/168 (28%), Positives = 83/168 (49%), Gaps = 3/168 (1%)
Query: 189 SIERACSTCRGSGQIIPHPCSKCHGQGRVSEEKLLSVNVPPGVDDGTRIRLSGEGGAGVY 248
S+E S C +I H G+ +E+K+L++ V G +GT+I EG
Sbjct: 14 SLEEIYSGCTKKMKI-SHKRLNPDGKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTSN 72
Query: 249 GGAPGDLYIFISVKKHQFFKRDGADLYCTVPISIVTVAMGGTFDVATLDATHSRVTIPEG 308
P D+ + K H FKRDG+D+ IS+ G T +V TLD V +
Sbjct: 73 NI-PADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTIPVVFKDV 131
Query: 309 TQTGKQFRLKGKGMPVI-NSGRKGDLYVQVQVETPQKLNKRQRELLEE 355
+ G + ++ G+G+P+ ++GDL ++ +V P+++ + R +LE+
Sbjct: 132 IRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQ 179
>1c3g_A Heat shock protein 40; beta sheets, short helices; 2.70A
{Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB:
2b26_A
Length = 170
Score = 109 bits (272), Expect = 1e-24
Identities = 41/146 (28%), Positives = 67/146 (45%), Gaps = 1/146 (0%)
Query: 210 KCHGQGRVSEEKLLSVNVPPGVDDGTRIRLSGEGGAGVYGGAPGDLYIFISVKKHQFFKR 269
G SE+ + + + PG GT+I +G G L I K H FKR
Sbjct: 25 GRKGPHGASEKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKR 84
Query: 270 DGADLYCTVPISIVTVAMGGTFDVATLDATHSRVTIPEGTQTGKQFRLKGKGMPVI-NSG 328
DG DL T+P+S +G + + T+D ++ + Q + G+GMP N
Sbjct: 85 DGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQPVQPSQTSTYPGQGMPTPKNPS 144
Query: 329 RKGDLYVQVQVETPQKLNKRQRELLE 354
++G+L V+ +V+ P LN Q+ ++
Sbjct: 145 QRGNLIVKYKVDYPISLNDAQKRAID 170
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone,
APC90013.2, structural genomics, PSI-2, protein
structure initiative; 1.86A {Caenorhabditis elegans}
Length = 73
Score = 106 bits (265), Expect = 1e-23
Identities = 37/72 (51%), Positives = 54/72 (75%), Gaps = 3/72 (4%)
Query: 1 MKKADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDP 60
+K+ +Y VLG+ +A+D +LK A+R +A+K+HPD+N P+ E+F QIS+AYEVL D
Sbjct: 5 VKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKN---PDGAEQFKQISQAYEVLSDE 61
Query: 61 QKRALYDQGGHE 72
+KR +YDQGG E
Sbjct: 62 KKRQIYDQGGEE 73
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif,
chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Length = 79
Score = 103 bits (259), Expect = 6e-23
Identities = 40/77 (51%), Positives = 51/77 (66%), Gaps = 1/77 (1%)
Query: 141 GKTVQIRFPTAVKCSTCSGSGAKPGTNPMDCNICNGSGRVYTTAQSFFSIERACSTCRGS 200
G T +IR PT +C C GSGAKPGT P C C+GSG+V Q FF++++ C C+G
Sbjct: 1 GVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQV-QMRQGFFAVQQTCPHCQGR 59
Query: 201 GQIIPHPCSKCHGQGRV 217
G +I PC+KCHG GRV
Sbjct: 60 GTLIKDPCNKCHGHGRV 76
Score = 29.5 bits (66), Expect = 1.2
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 143 TVQIRFPTAVKCSTCSGSGAKPGTNPMDCNICNGSGRVYTT 183
Q F C C G G +P CN C+G GRV +
Sbjct: 42 MRQGFFAVQQTCPHCQGRGTLI-KDP--CNKCHGHGRVERS 79
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP:
a.2.3.1
Length = 77
Score = 100 bits (250), Expect = 6e-22
Identities = 38/75 (50%), Positives = 57/75 (76%), Gaps = 2/75 (2%)
Query: 1 MKKADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDP 60
M K D+YQ LG+ R A+D ++K A+R A++YHPD+N +P A+EKF +I+EAY+VL DP
Sbjct: 1 MGK-DYYQTLGLARGASDEEIKRAYRRQALRYHPDKN-KEPGAEEKFKEIAEAYDVLSDP 58
Query: 61 QKRALYDQGGHEALE 75
+KR ++D+ G E L+
Sbjct: 59 RKREIFDRYGEEGLK 73
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR
{Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Length = 103
Score = 99.8 bits (248), Expect = 9e-22
Identities = 53/104 (50%), Positives = 71/104 (68%), Gaps = 2/104 (1%)
Query: 3 KADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDPQK 62
K D+Y++LG+ + A +R+++ A++ LAMKYHPD+N+ D EA+ KF +I EAYEVL D QK
Sbjct: 2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQK 61
Query: 63 RALYDQGGHEALEYGAQSQGAGGFGAGMYGNSDFSELFEGIFGG 106
RA YDQ GH A E G GGFG G + F ++F IFGG
Sbjct: 62 RAAYDQYGHAAFE--QGGMGGGGFGGGADFSDIFGDVFGDIFGG 103
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function; NMR {Homo sapiens} SCOP:
a.2.3.1
Length = 88
Score = 96.8 bits (241), Expect = 8e-21
Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
Query: 5 DFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPE-AKEKFAQISEAYEVLRDPQKR 63
+ V+ + + K R L +K+HPD+N + + A E F + L +K+
Sbjct: 17 EVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRL---EKQ 73
Query: 64 ALYDQGGHEAL 74
A DQ A
Sbjct: 74 AFLDQNADRAS 84
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 104
Score = 96.4 bits (239), Expect = 1e-20
Identities = 30/103 (29%), Positives = 44/103 (42%), Gaps = 1/103 (0%)
Query: 124 GADLRYNLEISLEEAFSGKTVQIRFPTAVKCSTCSGSGAKPGTNPMDCNICNGSGRVYTT 183
G+ +E++ +A G + C C+G G +PGT C+ C GSG T
Sbjct: 1 GSSGSSGMELTFNQAAKGVNKEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSGM-ETI 59
Query: 184 AQSFFSIERACSTCRGSGQIIPHPCSKCHGQGRVSEEKLLSVN 226
F + C C G G II PC C G G+ ++K +
Sbjct: 60 NTGPFVMRSTCRRCGGRGSIIISPCVVCRGAGQAKQKKRSGPS 102
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets,
chaperone; 2.07A {Saccharomyces cerevisiae}
Length = 121
Score = 96.2 bits (239), Expect = 1e-20
Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 3/105 (2%)
Query: 267 FKRDGADLYCTVPISIVTVAMGGTFDVATLDATHSRVTIPEGTQT--GKQFRLKGKGMPV 324
FKRDG DL I ++T GG F + + +V I G G + ++GKGMP+
Sbjct: 2 FKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPI 61
Query: 325 INSGRKGDLYVQVQVETPQKLNKRQRELLEEFEQISSQDNNPQST 369
G G+L ++ ++ P+ + L++ E+I P
Sbjct: 62 PKYGGYGNLIIKFTIKFPENHFTSEEN-LKKLEEILPPRIVPAIP 105
Score = 33.4 bits (76), Expect = 0.084
Identities = 13/59 (22%), Positives = 17/59 (28%), Gaps = 6/59 (10%)
Query: 113 SYKRSSSTGEAGADLRYNLEISLEEAFSGKTVQIRFPTAVKCSTCSGSGAKPGTNPMDC 171
S+KR G DL Y EI L A +G + + G
Sbjct: 1 SFKRD------GDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKV 53
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase
regulator/viral protein complex; 3.10A {Simian virus 40}
PDB: 2pkg_C
Length = 174
Score = 92.3 bits (229), Expect = 2e-19
Identities = 17/102 (16%), Positives = 40/102 (39%), Gaps = 15/102 (14%)
Query: 1 MKKADFYQVLGIDRNAT--DRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLR 58
+ +LG++R+A ++ A+ ++HPD+ ++ EK +++ Y+ +
Sbjct: 8 EESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE----EKMKKMNTLYKKME 63
Query: 59 DPQKRALYDQGGHEALEYGAQSQGAGGFGAGMYGNSDFSELF 100
D K A +G F + + N ++
Sbjct: 64 DGVKYAHQPD-------FGGFWDATEVFASSL--NPGVDAIY 96
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP:
a.2.3.1 PDB: 1xi5_J
Length = 182
Score = 90.5 bits (224), Expect = 6e-19
Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 5 DFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPE---AKEKFAQISEAYEVLRDPQ 61
++ +G+ T Q+K +R + HPD+ P AK F ++++A+ +
Sbjct: 118 TKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQG 177
Query: 62 KRALY 66
++ LY
Sbjct: 178 QKPLY 182
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein;
3.20A {Simian virus 40} SCOP: a.2.3.1
Length = 114
Score = 87.0 bits (215), Expect = 6e-18
Identities = 17/103 (16%), Positives = 38/103 (36%), Gaps = 7/103 (6%)
Query: 2 KKADFYQVLGIDRNAT--DRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRD 59
+ +LG++R+A ++ A+ ++HPD+ ++ EK +++ Y+ + D
Sbjct: 6 ESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE----EKMKKMNTLYKKMED 61
Query: 60 PQKRALYDQGGHEALEYGAQSQGAGGFGAGMYGNSDFSELFEG 102
K A G + + + LF
Sbjct: 62 GVKYAHQPDFGGFW-DATEIPTYGTDEWEQWWNAFNEENLFCS 103
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of
helices, viral protein; NMR {Murine polyomavirus} SCOP:
a.2.3.1
Length = 79
Score = 84.6 bits (209), Expect = 3e-17
Identities = 9/71 (12%), Positives = 27/71 (38%), Gaps = 6/71 (8%)
Query: 2 KKADFYQVLGIDRN--ATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRD 59
K ++L + R +++ A++ ++ HPD+ + +++ + +
Sbjct: 9 DKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSH----ALMQELNSLWGTFKT 64
Query: 60 PQKRALYDQGG 70
+ GG
Sbjct: 65 EVYNLRMNLGG 75
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain,
all helix protein, chaperone, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 84.3 bits (208), Expect = 4e-17
Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 1 MKKADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDP 60
+ Y +LG+ AT Q+K A+ YHPD+N EA E+F +IS+AY VL
Sbjct: 14 YSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSA 73
Query: 61 QKRALYDQGGHEALEYGAQSQGAGGFG 87
R YD+G + + G+G
Sbjct: 74 TLRRKYDRGLLS--DEDLRGPGSGPSS 98
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A
{Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Length = 171
Score = 84.1 bits (207), Expect = 5e-17
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 5 DFYQVLGIDRNAT--DRQLKTAFRSLAMKYHPDQNRNDPEAKEK-----FAQISEAYEVL 57
D++ + G+ + L F+ L +YHPD+ + +A++ A I++A++ L
Sbjct: 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61
Query: 58 RDPQKRALYDQGGH 71
R P RA Y H
Sbjct: 62 RHPLMRAEYLLSLH 75
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5,
structural genomics, PSI-2, protein structure
initiative; 1.25A {Saccharomyces cerevisiae}
Length = 92
Score = 82.5 bits (203), Expect = 1e-16
Identities = 37/80 (46%), Positives = 52/80 (65%), Gaps = 3/80 (3%)
Query: 1 MKKADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDP 60
+K+ Y +LG+ +A +++LK +R A+KYHPD+ D E KF +ISEA+E+L DP
Sbjct: 5 VKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTE---KFKEISEAFEILNDP 61
Query: 61 QKRALYDQGGHEALEYGAQS 80
QKR +YDQ G EA G S
Sbjct: 62 QKREIYDQYGLEAARSGGPS 81
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, chaperone; NMR {Mus musculus} SCOP:
a.2.3.1
Length = 94
Score = 81.6 bits (201), Expect = 3e-16
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Query: 1 MKKADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEK------FAQISEAY 54
+KK D+Y +LG D +A LK ++ L + YHPD+ D A F +I +A+
Sbjct: 14 LKK-DWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAW 72
Query: 55 EVLRDPQKRALYDQGGH 71
++L + + + YD
Sbjct: 73 KILGNEETKKKYDLQRS 89
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 88
Score = 80.5 bits (198), Expect = 5e-16
Identities = 38/88 (43%), Positives = 56/88 (63%), Gaps = 4/88 (4%)
Query: 2 KKADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDPQ 61
+Y +LG+ ++A++RQ+K AF LAMKYHPD+N++ P+A+ KF +I+EAYE L D
Sbjct: 5 SSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKS-PDAEAKFREIAEAYETLSDAN 63
Query: 62 KRALYDQGGHEALEYGAQSQGAGGFGAG 89
+R YD GH A +G G +G
Sbjct: 64 RRKEYDTLGHSAFT---SGKGQSGPSSG 88
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 109
Score = 80.2 bits (197), Expect = 7e-16
Identities = 36/106 (33%), Positives = 56/106 (52%), Gaps = 11/106 (10%)
Query: 1 MKKADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDP 60
Y VLG+D+NAT +K ++R LA+KYHPD+N ++PEA +KF +I+ A+ +L D
Sbjct: 14 TSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDA 73
Query: 61 QKRALYDQGGHEALEYGAQSQGAGGFGAGMYGNSDFSELFEGIFGG 106
KR +YD+ G G + A +G + + F
Sbjct: 74 TKRNIYDKYGSL-----------GLYVAEQFGEENVNTYFVSGPSS 108
>2qwo_B Putative tyrosine-protein phosphatase auxilin;
chaperone-cochaperone complex, ATP-binding, cytoplasm,
nucleotide-binding, nucleus, phosphorylation; HET: ADP;
1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B*
1nz6_A
Length = 92
Score = 79.5 bits (196), Expect = 1e-15
Identities = 12/58 (20%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 5 DFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPE---AKEKFAQISEAYEVLRD 59
++ +G+ T Q+K +R + HP + P AK F ++++A+ +
Sbjct: 34 TKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain,
helix-turn-helix motif, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 92
Score = 79.4 bits (195), Expect = 1e-15
Identities = 37/87 (42%), Positives = 59/87 (67%), Gaps = 4/87 (4%)
Query: 4 ADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAK-EKFAQISEAYEVLRDPQK 62
A++Y+VLG+ +A+ +K A+R LA+++HPD+N ++ E +KF +SEAYEVL D +K
Sbjct: 9 ANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKK 68
Query: 63 RALYDQGGHEALEYGAQSQGAGGFGAG 89
R+LYD+ G ++ G GA G +G
Sbjct: 69 RSLYDRAGCDSWRAGG---GASGPSSG 92
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 112
Score = 78.3 bits (192), Expect = 2e-15
Identities = 26/94 (27%), Positives = 45/94 (47%)
Query: 1 MKKADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDP 60
D+Y +LG D ++ Q+ F+ A++ HPD++ +P+A E F ++ +A E+L +
Sbjct: 17 EDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNE 76
Query: 61 QKRALYDQGGHEALEYGAQSQGAGGFGAGMYGNS 94
+ RA YD + Q A G S
Sbjct: 77 ESRARYDHWRRSQMSMPFQQWEALNDSVKTSGPS 110
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304,
center for structural genomics of infectious diseases,
CSGI; 2.15A {Vibrio cholerae}
Length = 174
Score = 77.9 bits (191), Expect = 4e-15
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 5 DFYQVLGIDRNAT--DRQLKTAFRSLAMKYHPDQNRNDPE-----AKEKFAQISEAYEVL 57
+++++ G+ L + FR+L ++HPD E A ++ AQI++AY+ L
Sbjct: 5 NYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTL 64
Query: 58 RDPQKRALYDQGGH 71
+DP +RA Y
Sbjct: 65 KDPLRRAEYLLSLQ 78
>1m1q_A Small tetraheme cytochrome C; atomic structure of oxidized
tetraheme cytochrome C, electron transport; HET: HEM;
0.97A {Shewanella oneidensis mr-1} SCOP: a.138.1.3 PDB:
1m1p_A* 1m1r_A*
Length = 91
Score = 77.1 bits (189), Expect = 5e-15
Identities = 15/75 (20%), Positives = 19/75 (25%), Gaps = 6/75 (8%)
Query: 151 AVKCSTCSGSG---AKPGTNPMDCNICNGSGRVYTTAQSFFSIERACSTC---RGSGQII 204
+ C +C G A C C+G C+ C
Sbjct: 12 SGGCESCHKDGTPSADGAFEFAQCQSCHGKLSEMDAVHKPHDGNLVCADCHAVHDMNVGQ 71
Query: 205 PHPCSKCHGQGRVSE 219
C CH GR S
Sbjct: 72 KPTCESCHDDGRTSA 86
Score = 27.0 bits (59), Expect = 6.8
Identities = 7/38 (18%), Positives = 10/38 (26%)
Query: 143 TVQIRFPTAVKCSTCSGSGAKPGTNPMDCNICNGSGRV 180
V + C+ C C C+ GR
Sbjct: 47 AVHKPHDGNLVCADCHAVHDMNVGQKPTCESCHDDGRT 84
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like
J-domain containing protein, JAC1, chloroplast
accumulation response; 1.80A {Arabidopsis thaliana}
Length = 106
Score = 76.9 bits (189), Expect = 7e-15
Identities = 7/62 (11%), Positives = 24/62 (38%), Gaps = 7/62 (11%)
Query: 5 DFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDP-------EAKEKFAQISEAYEVL 57
++ + + ++ +++ + HPD+ + A++ F + EA++
Sbjct: 41 SGWKPVPLMDMIEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHF 100
Query: 58 RD 59
Sbjct: 101 NT 102
>3bvo_A CO-chaperone protein HSCB, mitochondrial precursor; structural
genomics medical relevance, protein structure
initiative, PSI-2; 3.00A {Homo sapiens}
Length = 207
Score = 76.4 bits (187), Expect = 1e-14
Identities = 15/79 (18%), Positives = 31/79 (39%), Gaps = 7/79 (8%)
Query: 2 KKADFYQVLGIDR--NATDRQLKTAFRSLAMKYHPDQNRNDPEAKE-----KFAQISEAY 54
D++ ++ +R +L+ ++ L HPD + ++ +++AY
Sbjct: 41 PTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAY 100
Query: 55 EVLRDPQKRALYDQGGHEA 73
+ L P R LY H
Sbjct: 101 KTLLAPLSRGLYLLKLHGI 119
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens}
Length = 82
Score = 75.2 bits (184), Expect = 3e-14
Identities = 31/69 (44%), Positives = 48/69 (69%), Gaps = 1/69 (1%)
Query: 4 ADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEA-KEKFAQISEAYEVLRDPQK 62
D+Y+VL + R A+ +K A+R LA+K+HPD+N + E + +F Q++EAYEVL D +K
Sbjct: 9 VDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKK 68
Query: 63 RALYDQGGH 71
R +YD+ G
Sbjct: 69 RDIYDRYGS 77
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics,
molecular chaperone, NPPSFA; NMR {Mus musculus}
Length = 88
Score = 74.7 bits (183), Expect = 4e-14
Identities = 30/67 (44%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
Query: 5 DFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDPQKRA 64
D Y+VLG+ R A+ +K A++ LA ++HPD DP A+++F QIS+AYE+L + +KR
Sbjct: 18 DPYRVLGVSRTASQADIKKAYKKLAREWHPD-KNKDPGAEDRFIQISKAYEILSNEEKRT 76
Query: 65 LYDQGGH 71
YD G
Sbjct: 77 NYDHYGS 83
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 79
Score = 74.4 bits (182), Expect = 4e-14
Identities = 38/71 (53%), Positives = 52/71 (73%)
Query: 1 MKKADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDP 60
D+YQ+LG+ RNA+ +++K A+ LA KYHPD N++DP+AKEKF+Q++EAYEVL D
Sbjct: 4 GSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDE 63
Query: 61 QKRALYDQGGH 71
KR YD G
Sbjct: 64 VKRKQYDAYGS 74
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural
genomics, PSI-2, protein structure initiative; 1.68A
{Caenorhabditis elegans}
Length = 109
Score = 73.9 bits (181), Expect = 6e-14
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 3 KADFYQVLGIDRNATDRQ-LKTAFRSLAMKYHPDQNRNDPEAKE---KFAQISEAYEVLR 58
+ Y VL ++R D+Q L A+R+LA K+HPD+ +N E +F I+ AYE L+
Sbjct: 14 LENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLK 73
Query: 59 DPQKRALYDQGGHEALEYGAQSQG 82
D + + YD +
Sbjct: 74 DDEAKTNYDYYLDHPDQRFYNYYQ 97
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 78
Score = 69.4 bits (169), Expect = 1e-12
Identities = 34/71 (47%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 1 MKKADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDP 60
D+Y++LG+ R A+D LK A+R LA+K+HPD+N P A E F I AY VL +P
Sbjct: 4 GSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHA-PGATEAFKAIGTAYAVLSNP 62
Query: 61 QKRALYDQGGH 71
+KR YDQ G
Sbjct: 63 EKRKQYDQFGS 73
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14;
DNAJ-fold, chaperone, protein transport; HET: FLC;
2.00A {Saccharomyces cerevisiae}
Length = 71
Score = 67.6 bits (165), Expect = 4e-12
Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 5/64 (7%)
Query: 1 MKKADFYQVLGIDRNATDR-QLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRD 59
M + Q+L + N + +LK R + + HPD+ + +I+EA + L
Sbjct: 11 MNSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSP----FLATKINEAKDFLEK 66
Query: 60 PQKR 63
Sbjct: 67 RGIS 70
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16;
DNAJ-fold, chaperone, protein transport; HET: FLC;
2.00A {Saccharomyces cerevisiae}
Length = 65
Score = 43.8 bits (103), Expect = 6e-05
Identities = 8/66 (12%), Positives = 23/66 (34%), Gaps = 7/66 (10%)
Query: 1 MKKADFYQVLGIDR---NATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVL 57
M + ++L I+ + ++ F L ++ + +++ A E L
Sbjct: 1 MTLDESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGSF----YLQSKVYRAAERL 56
Query: 58 RDPQKR 63
+ +
Sbjct: 57 KWELAQ 62
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 40.7 bits (95), Expect = 6e-04
Identities = 87/473 (18%), Positives = 133/473 (28%), Gaps = 215/473 (45%)
Query: 27 SLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDP-QKR---ALYD--QGGHE---ALEYG 77
+LA K + + + KE A + + P K+ AL+ G+ A+ +G
Sbjct: 103 ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI-FG 161
Query: 78 AQSQGAGGFGAGMYGNSD--FSELFEGIFGGIMGSGRSYK-------RSSSTGEAGADLR 128
Q GN+D F EL + ++ ++Y + S A+
Sbjct: 162 GQ------------GNTDDYFEELRD-LY-------QTYHVLVGDLIKFS------AETL 195
Query: 129 YNLEISLEEAFS---GK---------------------TVQIRFPT---------AVKCS 155
L I + ++ I P V
Sbjct: 196 SEL-IRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVV--- 251
Query: 156 TCSGSGAKPGTNPMDCNICNGS-----GRVYTTA-------QSFFSIERACST------C 197
T G PG + + G+ G V A +SFF R T
Sbjct: 252 TAKLLGFTPGE--LRSYLK-GATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGV 308
Query: 198 RGSGQIIPH----PC----SKCHGQGRVSEEKLLSV-NVP-PGVD---DGT--------R 236
R + P+ P S + +G S +LS+ N+ V + T +
Sbjct: 309 R-CYEAYPNTSLPPSILEDSLENNEGVPS--PMLSISNLTQEQVQDYVNKTNSHLPAGKQ 365
Query: 237 IRLSGEGGAG--VYGGAPGDLY-------------------IFISVKK----HQF----- 266
+ +S GA V G P LY I S +K ++F
Sbjct: 366 VEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVAS 425
Query: 267 -F------------KRD---------GADL----YCT--------VPISIVT--VAMGGT 290
F +D D+ Y T + SI V
Sbjct: 426 PFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIR 485
Query: 291 FDV----AT-LDATH---------SRVTIPEGTQTGKQFRLK-GKGMPVINSG 328
V T ATH S + G T R K G G+ VI +G
Sbjct: 486 LPVKWETTTQFKATHILDFGPGGASGL----GVLTH---RNKDGTGVRVIVAG 531
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 37.6 bits (87), Expect = 0.005
Identities = 12/57 (21%), Positives = 18/57 (31%), Gaps = 24/57 (42%)
Query: 188 FSIERACSTCRG----------SGQIIPHPCSKCHGQGRVSEEKLLSVNVPPGVDDG 234
+I C C+ G ++ C+ C G V +KL VD
Sbjct: 18 LNIVLTCPECKVYPPKIVERFSEGDVV---CALC---GLVLSDKL--------VDTR 60
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibitory
protein; transcription regulation, Trp RNA-binding
attenuation protein; 2.8A {Bacillus subtilis} PDB:
2zp8_E* 2zp9_C*
Length = 53
Score = 35.4 bits (81), Expect = 0.024
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 190 IERACSTCRGSGQIIPHPCSKCHGQG 215
+E AC C +G+I PC C G+G
Sbjct: 8 LEVACPKCERAGEIEGTPCPACSGKG 33
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) sequence RTPA;
anti-trap, tryptophan RNA-binding attenuation protein;
2.06A {Bacillus licheniformis} PDB: 3ld0_A
Length = 53
Score = 35.4 bits (81), Expect = 0.024
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 190 IERACSTCRGSGQIIPHPCSKCHGQG 215
+E C C GSG+ P PC KC G+G
Sbjct: 8 LETTCPNCNGSGREEPEPCPKCLGKG 33
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein
biogenesis, GET PAT GET5 binding, protein transport;
1.98A {Chaetomium thermophilum}
Length = 336
Score = 33.8 bits (77), Expect = 0.066
Identities = 18/111 (16%), Positives = 27/111 (24%), Gaps = 28/111 (25%)
Query: 16 ATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDPQKRALYDQGGHEALE 75
+ + FR L KY + N + I+E Y
Sbjct: 254 SVQKGSPDLFRQLKSKYEANLNELNGIWDTALELIAEMY--------------------- 292
Query: 76 YGAQSQGAGGFGAGMYGNSDFSELFEGIFGGIMGSGRSYKRSSSTGEAGAD 126
+G Q M LF S + +R + G D
Sbjct: 293 FGIQRPRQSNPLLDM-----MGSLFXXXXXA--PSKAALRRIDTPAAEGLD 336
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein,
nucleotide-binding, zinc-binding domain, SOS response,
metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans}
PDB: 2vf8_A*
Length = 842
Score = 31.7 bits (71), Expect = 0.27
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 174 CNGSGRVYTTAQSFFSIERACSTCRGSGQII 204
G G VY S + E AC C G G++
Sbjct: 131 PPGQGIVYAEGFSPNTPEGACPECHGLGRVY 161
>2cvc_A Cytochrome CC3, high-molecular-weight cytochrome C precursor;
electron transport; HET: HEM; 2.00A {Desulfovibrio
vulgaris} SCOP: a.138.1.1 PDB: 1gws_A* 1h29_A*
Length = 545
Score = 31.6 bits (69), Expect = 0.32
Identities = 11/71 (15%), Positives = 17/71 (23%), Gaps = 7/71 (9%)
Query: 150 TAVKCSTCSGSGAKPGTNPMDCNICNG---SGRVYTTAQSFFSIERACSTC---RGSGQI 203
C C + P C C+G + + C C +
Sbjct: 473 KGTLCQGCH-HNSPASLTPPKCASCHGKPFDADRGDRPGLKAAYHQQCMGCHDRMKIEKP 531
Query: 204 IPHPCSKCHGQ 214
C CH +
Sbjct: 532 ANTACVDCHKE 542
>2k3v_A Tetraheme cytochrome C-type; multihaem cytochromes, redox proteins,
electron transport, iron, metal-binding, periplasm,
transport; HET: HEM; NMR {Shewanella frigidimarina}
Length = 86
Score = 31.3 bits (70), Expect = 0.38
Identities = 14/75 (18%), Positives = 20/75 (26%), Gaps = 6/75 (8%)
Query: 151 AVKCSTCSGSGAKPGTNPMD---CNICNGSGRVYTTAQSFFSIERACSTC-RGSGQIIPH 206
C C G + C C+GS C+ C +
Sbjct: 12 MGGCENCHADGEPSKDGAYEFEQCQSCHGSLAEMDDNHKPHDGLLMCADCHAPHEAKVGE 71
Query: 207 P--CSKCHGQGRVSE 219
C CH GR ++
Sbjct: 72 KPTCDTCHDDGRTAK 86
>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A
{Arenicola marina}
Length = 167
Score = 30.0 bits (67), Expect = 0.98
Identities = 9/77 (11%), Positives = 21/77 (27%)
Query: 132 EISLEEAFSGKTVQIRFPTAVKCSTCSGSGAKPGTNPMDCNICNGSGRVYTTAQSFFSIE 191
++++ E F+GK + S + G + A + +
Sbjct: 22 KVNMAELFAGKKGVLFAVPGAFTPGSSKTHLPGYVEQAAAIHGKGVDIIACMAVNDSFVM 81
Query: 192 RACSTCRGSGQIIPHPC 208
A G+ +
Sbjct: 82 DAWGKAHGADDKVQMLA 98
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 2.3
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 6/34 (17%)
Query: 343 QKLNKRQRELLEEFEQISSQDNNPQSTGFFARMK 376
Q L K Q L ++ + D+ P + A M+
Sbjct: 20 QALKKLQASL-----KLYADDSAP-ALAIKATME 47
>3k51_B Decoy receptor 3; DCR3, TL1A, TNF, TNFR, immunity, cytokine, D
bond, glycoprotein, membrane, secreted, signal-anchor,
transmembrane, apoptosis; 2.45A {Homo sapiens}
Length = 176
Score = 28.2 bits (62), Expect = 3.3
Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 6/63 (9%)
Query: 154 CSTCS-GSGAK---PGTNPMDCNICNGSGRVYTTAQSFFSIERACSTCRGSGQIIPHPCS 209
C+ C G+ + +P C C YT ++ R C+ G + C
Sbjct: 22 CAQCPPGTFVQRPCRRDSPTTCGPC-PPRH-YTQFWNYLERCRYCNVLCGEREEEARACH 79
Query: 210 KCH 212
H
Sbjct: 80 ATH 82
>3me4_A Tumor necrosis factor receptor superfamily member; RANK, rankl,
rankl-RANK complex, tnfsf11, tnfrsf11A, TNF SUP
signaling protein; 2.01A {Mus musculus} PDB: 3me2_R
Length = 216
Score = 28.0 bits (61), Expect = 3.4
Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 8/65 (12%)
Query: 153 KCSTCS-GSGAK-PGTNPMD--CNIC-NGSGRVYTTAQSFFSIERACSTCRGSGQIIPHP 207
+ + C+ G GA+ P D C C G ++ S + + C G++ H
Sbjct: 128 RNTECAPGFGAQHPLQLNKDTVCTPCLLGF---FSDVFSSTDKCKPWTNCTLLGKLEAHQ 184
Query: 208 CSKCH 212
+
Sbjct: 185 GTTES 189
>2ahx_A P180ERBB4, receptor tyrosine-protein kinase ERBB-4; X-RAY
crystallography, neuregulins, heparin-binding, cell
cycle,signaling protein; HET: NAG NDG; 2.40A {Homo
sapiens}
Length = 617
Score = 28.1 bits (61), Expect = 3.5
Identities = 15/68 (22%), Positives = 20/68 (29%), Gaps = 5/68 (7%)
Query: 153 KCSTCSGSGAKPG-----TNPMDCNICNGSGRVYTTAQSFFSIERACSTCRGSGQIIPHP 207
CS+ G P IC S +Y F + C C + +
Sbjct: 482 LCSSDGCWGPGPDQCLSCRRFSRGRICIESCNLYDGEFREFENDSICVECDPQCEKMEDG 541
Query: 208 CSKCHGQG 215
CHG G
Sbjct: 542 LLTCHGPG 549
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport
protein; 2.50A {Saccharomyces cerevisiae YJM789}
Length = 814
Score = 27.5 bits (60), Expect = 4.9
Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 22 KTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDPQKRALYDQGGHEALEYG 77
+ A+ PDQ++ E K Q++ A ++L D + G +L+
Sbjct: 641 GQEYYEEALNISPDQDQK-FELALKVGQLTLARDLLTDESAEMKWRALGDASLQRF 695
>3isq_A 4-hydroxyphenylpyruvate dioxygenase; tyrosine metabolism,
acetylation, disease mutation, iron, mental retardation,
metal-binding, oxidoreductase; 1.75A {Homo sapiens} PDB:
1sqi_A*
Length = 393
Score = 27.0 bits (59), Expect = 8.6
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 5/25 (20%)
Query: 79 QSQGAGGFGAGMYGNSDFSELFEGI 103
Q GFGAG +F+ LF+
Sbjct: 345 QRHNHQGFGAG-----NFNSLFKAF 364
>2uwi_A CRME protein; receptor, poxvirus TNF receptor, receptor
immunomodulator, TNF alpha receptor; 2.0A {Vaccinia
virus}
Length = 142
Score = 26.6 bits (57), Expect = 9.0
Identities = 10/62 (16%), Positives = 21/62 (33%), Gaps = 2/62 (3%)
Query: 154 CSTC-SGSGAKPGTNPMDCNICNGSGRV-YTTAQSFFSIERACSTCRGSGQIIPHPCSKC 211
C C G+ + + IC +T+ + +C G+ ++ PC+
Sbjct: 17 CKLCKPGTYSDHRCDKYSDTICGHCPSDTFTSIYNRSPWCHSCRGPCGTNRVEVTPCTPT 76
Query: 212 HG 213
Sbjct: 77 TN 78
>1sp8_A 4-hydroxyphenylpyruvate dioxygenase; oxidoreductase; 2.00A {Zea
mays} SCOP: d.32.1.3 d.32.1.3
Length = 418
Score = 26.7 bits (58), Expect = 9.0
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 5/25 (20%)
Query: 79 QSQGAGGFGAGMYGNSDFSELFEGI 103
Q G GGFG G +FS+LF+ I
Sbjct: 388 QKGGCGGFGKG-----NFSQLFKSI 407
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated
protein RAP1, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 90
Score = 26.7 bits (58), Expect = 9.4
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 5 DFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQ 36
D + +LG+ A+ ++ A+R LA+ HPD+
Sbjct: 28 DSWDMLGVKPGASRDEVNKAYRKLAVLLHPDK 59
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.317 0.135 0.396
Gapped
Lambda K H
0.267 0.0492 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,415,737
Number of extensions: 167964
Number of successful extensions: 711
Number of sequences better than 10.0: 1
Number of HSP's gapped: 635
Number of HSP's successfully gapped: 80
Length of query: 384
Length of database: 5,693,230
Length adjustment: 94
Effective length of query: 290
Effective length of database: 3,414,294
Effective search space: 990145260
Effective search space used: 990145260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.3 bits)