BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780638|ref|YP_003065051.1| molecular chaperone protein DnaJ [Candidatus Liberibacter asiaticus str. psy62] (384 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780638|ref|YP_003065051.1| molecular chaperone protein DnaJ [Candidatus Liberibacter asiaticus str. psy62] Length = 384 Score = 794 bits (2050), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/384 (100%), Positives = 384/384 (100%) Query: 1 MKKADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDP 60 MKKADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDP Sbjct: 1 MKKADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDP 60 Query: 61 QKRALYDQGGHEALEYGAQSQGAGGFGAGMYGNSDFSELFEGIFGGIMGSGRSYKRSSST 120 QKRALYDQGGHEALEYGAQSQGAGGFGAGMYGNSDFSELFEGIFGGIMGSGRSYKRSSST Sbjct: 61 QKRALYDQGGHEALEYGAQSQGAGGFGAGMYGNSDFSELFEGIFGGIMGSGRSYKRSSST 120 Query: 121 GEAGADLRYNLEISLEEAFSGKTVQIRFPTAVKCSTCSGSGAKPGTNPMDCNICNGSGRV 180 GEAGADLRYNLEISLEEAFSGKTVQIRFPTAVKCSTCSGSGAKPGTNPMDCNICNGSGRV Sbjct: 121 GEAGADLRYNLEISLEEAFSGKTVQIRFPTAVKCSTCSGSGAKPGTNPMDCNICNGSGRV 180 Query: 181 YTTAQSFFSIERACSTCRGSGQIIPHPCSKCHGQGRVSEEKLLSVNVPPGVDDGTRIRLS 240 YTTAQSFFSIERACSTCRGSGQIIPHPCSKCHGQGRVSEEKLLSVNVPPGVDDGTRIRLS Sbjct: 181 YTTAQSFFSIERACSTCRGSGQIIPHPCSKCHGQGRVSEEKLLSVNVPPGVDDGTRIRLS 240 Query: 241 GEGGAGVYGGAPGDLYIFISVKKHQFFKRDGADLYCTVPISIVTVAMGGTFDVATLDATH 300 GEGGAGVYGGAPGDLYIFISVKKHQFFKRDGADLYCTVPISIVTVAMGGTFDVATLDATH Sbjct: 241 GEGGAGVYGGAPGDLYIFISVKKHQFFKRDGADLYCTVPISIVTVAMGGTFDVATLDATH 300 Query: 301 SRVTIPEGTQTGKQFRLKGKGMPVINSGRKGDLYVQVQVETPQKLNKRQRELLEEFEQIS 360 SRVTIPEGTQTGKQFRLKGKGMPVINSGRKGDLYVQVQVETPQKLNKRQRELLEEFEQIS Sbjct: 301 SRVTIPEGTQTGKQFRLKGKGMPVINSGRKGDLYVQVQVETPQKLNKRQRELLEEFEQIS 360 Query: 361 SQDNNPQSTGFFARMKDFFDSLKN 384 SQDNNPQSTGFFARMKDFFDSLKN Sbjct: 361 SQDNNPQSTGFFARMKDFFDSLKN 384 >gi|254780585|ref|YP_003064998.1| molecular chaperone DnaJ family protein [Candidatus Liberibacter asiaticus str. psy62] Length = 191 Score = 40.4 bits (93), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 14/52 (26%), Positives = 35/52 (67%) Query: 7 YQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLR 58 +++LG+ +++ +++ ++ L K+HPD N D ++E+F + +AY++L+ Sbjct: 135 FEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILK 186 >gi|254780633|ref|YP_003065046.1| creatinine amidohydrolase [Candidatus Liberibacter asiaticus str. psy62] Length = 267 Score = 28.1 bits (61), Expect = 0.24, Method: Compositional matrix adjust. Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 4/99 (4%) Query: 280 ISIVTVAMGGTFDVATLDATHSRVTIPEGTQTGKQFRLKGKGMPVINSGRKGDLYVQVQV 339 +SIV+ F + + + SR TIP+G + + + G + S V++ Sbjct: 124 VSIVSTEARMRFSMLVVSTSWSRFTIPQGIISFPETEIGIHGGEIETSMMLALAPHLVKM 183 Query: 340 ETPQKLNKRQRELLEEFEQISSQDNNPQSTGFFARMKDF 378 + + + RQ E L F+ + + S F MKD Sbjct: 184 DLAENFSSRQSEFLRNFKYLRAHG----SHSFGWSMKDL 218 >gi|254780548|ref|YP_003064961.1| translocation protein TolB [Candidatus Liberibacter asiaticus str. psy62] Length = 447 Score = 26.6 bits (57), Expect = 0.77, Method: Compositional matrix adjust. Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 5/47 (10%) Query: 5 DFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNR----NDPEAKEKF 47 D Y V + NAT+R T F +++ Y PD ++ +D E KE+ Sbjct: 283 DIYSV-DLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQL 328 >gi|254781048|ref|YP_003065461.1| malate dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] Length = 320 Score = 25.0 bits (53), Expect = 1.9, Method: Compositional matrix adjust. Identities = 11/25 (44%), Positives = 16/25 (64%) Query: 78 AQSQGAGGFGAGMYGNSDFSELFEG 102 A+S GFGA + G SD+S++ E Sbjct: 48 AESSPVEGFGAQLCGTSDYSDIAEA 72 >gi|254780945|ref|YP_003065358.1| ATP-dependent DNA helicase RecG [Candidatus Liberibacter asiaticus str. psy62] Length = 700 Score = 25.0 bits (53), Expect = 2.1, Method: Compositional matrix adjust. Identities = 9/29 (31%), Positives = 17/29 (58%) Query: 34 PDQNRNDPEAKEKFAQISEAYEVLRDPQK 62 P+ D K+ F I+EA+ ++ +P+K Sbjct: 186 PEWIEKDLLQKKSFPSIAEAFNIIHNPRK 214 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.317 0.135 0.396 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 252,285 Number of Sequences: 1233 Number of extensions: 10708 Number of successful extensions: 39 Number of sequences better than 100.0: 7 Number of HSP's better than 100.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 28 Number of HSP's gapped (non-prelim): 7 length of query: 384 length of database: 328,796 effective HSP length: 76 effective length of query: 308 effective length of database: 235,088 effective search space: 72407104 effective search space used: 72407104 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 39 (19.6 bits)