RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780639|ref|YP_003065052.1| hypothetical protein
CLIBASIA_02630 [Candidatus Liberibacter asiaticus str. psy62]
         (39 letters)



>gnl|CDD|185224 PRK15324, PRK15324, type III secretion system lipoprotein PrgK;
          Provisional.
          Length = 252

 Score = 26.2 bits (57), Expect = 2.3
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 4  GYGISVVMMEKTAIQDWIETFEL 26
          GY I+V   + TA   WI+T++L
Sbjct: 55 GYSITVAEPDFTAAVYWIKTYQL 77


>gnl|CDD|180400 PRK06102, PRK06102, hypothetical protein; Provisional.
          Length = 452

 Score = 25.4 bits (56), Expect = 3.7
 Identities = 6/22 (27%), Positives = 11/22 (50%)

Query: 10  VMMEKTAIQDWIETFELGKEHG 31
            ++E+ A   + E  +L   HG
Sbjct: 281 ALVERQAFPAFQEILDLIARHG 302


>gnl|CDD|182091 PRK09814, PRK09814, beta-1,6-galactofuranosyltransferase;
           Provisional.
          Length = 333

 Score = 24.9 bits (55), Expect = 4.3
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query: 6   GISVVMMEKTAIQDWIETFELG 27
           G+ V++  K AI D+I    LG
Sbjct: 260 GLPVIVWSKAAIADFIVENGLG 281


>gnl|CDD|137204 PRK09310, aroDE, bifunctional 3-dehydroquinate
           dehydratase/shikimate dehydrogenase protein; Reviewed.
          Length = 477

 Score = 24.8 bits (54), Expect = 5.9
 Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 4/33 (12%)

Query: 6   GISVVMMEKTAIQDWIETFELGKEHGRKLEKTC 38
           G+SV M  KTA+ D+++      +   KL  +C
Sbjct: 271 GLSVTMPLKTAVLDFLDKL----DPSVKLCGSC 299


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.319    0.136    0.427 

Gapped
Lambda     K      H
   0.267   0.0545    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 605,096
Number of extensions: 18809
Number of successful extensions: 39
Number of sequences better than 10.0: 1
Number of HSP's gapped: 39
Number of HSP's successfully gapped: 5
Length of query: 39
Length of database: 5,994,473
Length adjustment: 13
Effective length of query: 26
Effective length of database: 5,713,569
Effective search space: 148552794
Effective search space used: 148552794
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.5 bits)