BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780639|ref|YP_003065052.1| hypothetical protein CLIBASIA_02630 [Candidatus Liberibacter asiaticus str. psy62] (39 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780639|ref|YP_003065052.1| hypothetical protein CLIBASIA_02630 [Candidatus Liberibacter asiaticus str. psy62] Length = 39 Score = 82.0 bits (201), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 39/39 (100%), Positives = 39/39 (100%) Query: 1 MGEGYGISVVMMEKTAIQDWIETFELGKEHGRKLEKTCC 39 MGEGYGISVVMMEKTAIQDWIETFELGKEHGRKLEKTCC Sbjct: 1 MGEGYGISVVMMEKTAIQDWIETFELGKEHGRKLEKTCC 39 >gi|254780821|ref|YP_003065234.1| FolC bifunctional protein [Candidatus Liberibacter asiaticus str. psy62] Length = 429 Score = 21.2 bits (43), Expect = 3.6, Method: Composition-based stats. Identities = 11/30 (36%), Positives = 15/30 (50%) Query: 3 EGYGISVVMMEKTAIQDWIETFELGKEHGR 32 E G+SV + + W E F LG + GR Sbjct: 47 ETSGLSVHVHTSPHLIRWNERFRLGVKGGR 76 >gi|254780634|ref|YP_003065047.1| NOL1/NOP2/SUN family signature protein [Candidatus Liberibacter asiaticus str. psy62] Length = 429 Score = 20.8 bits (42), Expect = 4.9, Method: Composition-based stats. Identities = 7/25 (28%), Positives = 12/25 (48%) Query: 15 TAIQDWIETFELGKEHGRKLEKTCC 39 + I DW + ++L +E CC Sbjct: 384 SIIDDWNQLYDLKNHPSLFIENGCC 408 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.319 0.136 0.427 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 24,290 Number of Sequences: 1233 Number of extensions: 477 Number of successful extensions: 3 Number of sequences better than 100.0: 3 Number of HSP's better than 100.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3 length of query: 39 length of database: 328,796 effective HSP length: 13 effective length of query: 26 effective length of database: 312,767 effective search space: 8131942 effective search space used: 8131942 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.3 bits) S2: 31 (16.5 bits)