HHsearch alignment for GI: 254780640 and conserved domain: TIGR00611
>TIGR00611 recf DNA replication and repair protein RecF; InterPro: IPR001238 All proteins in this family, including recF, for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. RecF is involved in DNA metabolism and is required for recombinational DNA repair and for induction of the SOS response , . ; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair.
Probab=99.52 E-value=2.7e-15 Score=96.24 Aligned_cols=75 Identities=24% Similarity=0.379 Sum_probs=62.0
Q ss_pred EEEEEEE---------EECEECCCCCEEEE---CCCCEE-EEEECCCCCH--HHHHHHHHHHHCCCCCCCCCHH-HHHHC
Q ss_conf 8998999---------95401368317998---689869-9990798657--8999999998579775643313-33102
Q gi|254780640|r 27 FKLLDIE---------ISHFRGFTEIQKIE---FADHLT-IVNGQNGYGK--SSLSEAIEWLFYGYTQRRKHGD-SIKKR 90 (110)
Q Consensus 27 ~kl~~i~---------i~nFr~f~~~~~i~---f~~~~~-~i~G~Ng~GK--Stil~ai~~~l~g~~~~~~~~d-~i~~~ 90 (110)
T Consensus 1 M~~~~L~rPCrCGCkPl~~FRNy~-~v~L~rCvl~p~~Nq~~~G~NgqGKrPTnllEAiy~L~~~rShR~~~~~~lIr~~ 79 (399)
T TIGR00611 1 MYLSRLERPCRCGCKPLKDFRNYD-EVDLERCVLSPGVNQVFVGPNGQGKRPTNLLEAIYYLALGRSHRTSRDKELIRFG 79 (399)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCHH-HCCCHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEECC
T ss_conf 923001775556775688877864-5010020117887448876788986407899999998744435442056301127
Q ss_pred CCCCCCEEEEEE
Q ss_conf 445741278996
Q gi|254780640|r 91 SIKTPMPMCMAV 102 (110)
Q Consensus 91 s~~~pi~l~~~v 102 (110)
T Consensus 80 ~~~~~~~g~~~~ 91 (399)
T TIGR00611 80 AEAAVIEGRVSK 91 (399)
T ss_pred CCEEEEEEEEEE
T ss_conf 861799999980