HHsearch alignment for GI: 254780640 and conserved domain: TIGR01420
>TIGR01420 pilT_fam twitching motility protein; InterPro: IPR006321 These represent the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction . Members of this family may be found in some species that do not have type IV pili but have related structures for DNA uptake and natural transformation. ; GO: 0005524 ATP binding, 0006810 transport.
Probab=96.76 E-value=0.0011 Score=38.13 Aligned_cols=74 Identities=20% Similarity=0.304 Sum_probs=45.4
Q ss_pred EEEEEEEEEEEECEECCCCCEEE--EC---CCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCEE
Q ss_conf 01689989999540136831799--86---89869999079865789999999985797756433133310244574127
Q gi|254780640|r 24 KLIFKLLDIEISHFRGFTEIQKI--EF---ADHLTIVNGQNGYGKSSLSEAIEWLFYGYTQRRKHGDSIKKRSIKTPMPM 98 (110)
Q Consensus 24 ~~~~kl~~i~i~nFr~f~~~~~i--~f---~~~~~~i~G~Ng~GKStil~ai~~~l~g~~~~~~~~d~i~~~s~~~pi~l 98 (110)
T Consensus 96 a~vlR~ip~~Ip~fe~LGLP~~v~~~~a~~~~GLiLVTGPTGSGKSTTlAsmIDyIN~-------~~~~HIiTIEDPIEy 168 (350)
T TIGR01420 96 ALVLRLIPSKIPTFEELGLPRPVLRELAERPRGLILVTGPTGSGKSTTLASMIDYINK-------NKAGHIITIEDPIEY 168 (350)
T ss_pred HHHHHHCCCCCCCHHHCCCCHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHC-------CCCCCCEEEECCEEE
T ss_conf 4232311534621666379878999998366993898768898678999999978740-------388882563177314
Q ss_pred EEEECC
Q ss_conf 899628
Q gi|254780640|r 99 CMAVPR 104 (110)
Q Consensus 99 ~~~v~~ 104 (110)
T Consensus 169 vh~~~~ 174 (350)
T TIGR01420 169 VHKNKR 174 (350)
T ss_pred EECCCE
T ss_conf 104770