HHsearch alignment for GI: 254780640 and conserved domain: TIGR01842
>TIGR01842 type_I_sec_PrtD type I secretion system ATPase; InterPro: IPR010128 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0015031 protein transport, 0016021 integral to membrane.
Probab=91.32 E-value=0.17 Score=27.28 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=21.9
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 86999907986578999999998579
Q gi|254780640|r 51 HLTIVNGQNGYGKSSLSEAIEWLFYG 76 (110)
Q Consensus 51 ~~~~i~G~Ng~GKStil~ai~~~l~g 76 (110)
T Consensus 357 e~laIIGPSgSGKStLaR~~vG~W~~ 382 (556)
T TIGR01842 357 EALAIIGPSGSGKSTLARILVGIWPP 382 (556)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 45888747865258898788721013