HHsearch alignment for GI: 254780640 and conserved domain: cd01854
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=95.61 E-value=0.011 Score=33.22 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=21.3
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHH
Q ss_conf 689869999079865789999999
Q gi|254780640|r 48 FADHLTIVNGQNGYGKSSLSEAIE 71 (110)
Q Consensus 48 f~~~~~~i~G~Ng~GKStil~ai~ 71 (110)
T Consensus 159 l~~k~~v~~G~SGvGKSSLiN~L~ 182 (287)
T cd01854 159 LKGKTSVLVGQSGVGKSTLINALL 182 (287)
T ss_pred HCCCEEEEECCCCCCHHHHHHHHC
T ss_conf 479889998899888899998746