HHsearch alignment for GI: 254780640 and conserved domain: cd03237
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.63 E-value=4.8e-05 Score=45.00 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=21.7
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 8699990798657899999999857
Q gi|254780640|r 51 HLTIVNGQNGYGKSSLSEAIEWLFY 75 (110)
Q Consensus 51 ~~~~i~G~Ng~GKStil~ai~~~l~ 75 (110)
T Consensus 26 Eiv~liGpNGaGKSTLlk~l~Gll~ 50 (246)
T cd03237 26 EVIGILGPNGIGKTTFIKMLAGVLK 50 (246)
T ss_pred CEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 8999997999769999999977878