HHsearch alignment for GI: 254780640 and conserved domain: cd03239
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.64 E-value=2.7e-16 Score=101.25 Aligned_cols=59 Identities=20% Similarity=0.460 Sum_probs=51.7
Q ss_pred EEEEEEECEECCCCCEEEECCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHH
Q ss_conf 98999954013683179986898699990798657899999999857977564331333
Q gi|254780640|r 29 LLDIEISHFRGFTEIQKIEFADHLTIVNGQNGYGKSSLSEAIEWLFYGYTQRRKHGDSI 87 (110)
Q Consensus 29 l~~i~i~nFr~f~~~~~i~f~~~~~~i~G~Ng~GKStil~ai~~~l~g~~~~~~~~d~i 87 (110)
T Consensus 1 ik~i~l~nFksf~~~~~~~~~~~~~~ivG~nGsGKSni~~ai~~~~g~~~~~~~~~~~l 59 (178)
T cd03239 1 IKQITLKNFKSYRDETVVGGSNSFNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLL 59 (178)
T ss_pred CCEEEEECCCCCCCCEEECCCCCEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 95899938045689888348998179989998877899999999986642765200135