HHsearch alignment for GI: 254780640 and conserved domain: cd03251
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.07 E-value=0.00068 Score=39.26 Aligned_cols=32 Identities=22% Similarity=0.372 Sum_probs=24.6
Q ss_pred EEECCC-CEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 998689-86999907986578999999998579
Q gi|254780640|r 45 KIEFAD-HLTIVNGQNGYGKSSLSEAIEWLFYG 76 (110)
Q Consensus 45 ~i~f~~-~~~~i~G~Ng~GKStil~ai~~~l~g 76 (110)
T Consensus 22 nl~i~~Ge~i~IvG~sGsGKSTLl~ll~gl~~p 54 (234)
T cd03251 22 SLDIPAGETVALVGPSGSGKSTLVNLIPRFYDV 54 (234)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 899879999999989998299999999667667