HHsearch alignment for GI: 254780640 and conserved domain: cd03264
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.02 E-value=1.4e-05 Score=47.68 Aligned_cols=41 Identities=20% Similarity=0.229 Sum_probs=30.5
Q ss_pred EECEECCCCCEEEECCCCEEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 954013683179986898699990798657899999999857
Q gi|254780640|r 34 ISHFRGFTEIQKIEFADHLTIVNGQNGYGKSSLSEAIEWLFY 75 (110)
Q Consensus 34 i~nFr~f~~~~~i~f~~~~~~i~G~Ng~GKStil~ai~~~l~ 75 (110)
T Consensus 10 y~~~~al~~-vs~~i~~Gi~gllGpNGAGKSTll~~i~Gl~~ 50 (211)
T cd03264 10 YGKKRALDG-VSLTLGPGMYGLLGPNGAGKTTLMRILATLTP 50 (211)
T ss_pred ECCEEEECC-CEEEECCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 999899737-14688897599999998239999999975966