HHsearch alignment for GI: 254780640 and conserved domain: cd03275

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.65  E-value=3.7e-16  Score=100.58  Aligned_cols=79  Identities=22%  Similarity=0.304  Sum_probs=58.9

Q ss_pred             EEEEEEECEECCCCCEEEECCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCC----HHHHHHCCC------CCCCEE
Q ss_conf             9899995401368317998689869999079865789999999985797756433----133310244------574127
Q gi|254780640|r   29 LLDIEISHFRGFTEIQKIEFADHLTIVNGQNGYGKSSLSEAIEWLFYGYTQRRKH----GDSIKKRSI------KTPMPM   98 (110)
Q Consensus        29 l~~i~i~nFr~f~~~~~i~f~~~~~~i~G~Ng~GKStil~ai~~~l~g~~~~~~~----~d~i~~~s~------~~pi~l   98 (110)
T Consensus         1 lk~l~l~gFKSf~~~~~i~~~~~~t~IvGpNGsGKSNi~DAi~~vlGe~s~-~lR~~~m~DlIf~g~~~~~~~~~A~V~l   79 (247)
T cd03275           1 LKRLELENFKSYKGRHVIGPFDRFTCIIGPNGSGKSNLMDAISFVLGEKSS-HLRSKNLKDLIYRARVGKPDSNSAYVTA   79 (247)
T ss_pred             CCEEEECCCCCCCCCEEECCCCCCEEEECCCCCCHHHHHHHHHHHHCCCHH-HHCCCCCCEEEECCCCCCCCCCEEEEEE
T ss_conf             944898075367898685489983799899877658889999999656623-3064561127865887889985489999


Q ss_pred             EEEECCCEEE
Q ss_conf             8996285567
Q gi|254780640|r   99 CMAVPRCKYQ  108 (110)
Q Consensus        99 ~~~v~~~~y~  108 (110)
T Consensus        80 ~f~n~~~ev~   89 (247)
T cd03275          80 VYEDDDGEEK   89 (247)
T ss_pred             EEECCCCEEE
T ss_conf             9988998599