HHsearch alignment for GI: 254780640 and conserved domain: cd03275
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.65 E-value=3.7e-16 Score=100.58 Aligned_cols=79 Identities=22% Similarity=0.304 Sum_probs=58.9
Q ss_pred EEEEEEECEECCCCCEEEECCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCC----HHHHHHCCC------CCCCEE
Q ss_conf 9899995401368317998689869999079865789999999985797756433----133310244------574127
Q gi|254780640|r 29 LLDIEISHFRGFTEIQKIEFADHLTIVNGQNGYGKSSLSEAIEWLFYGYTQRRKH----GDSIKKRSI------KTPMPM 98 (110)
Q Consensus 29 l~~i~i~nFr~f~~~~~i~f~~~~~~i~G~Ng~GKStil~ai~~~l~g~~~~~~~----~d~i~~~s~------~~pi~l 98 (110)
T Consensus 1 lk~l~l~gFKSf~~~~~i~~~~~~t~IvGpNGsGKSNi~DAi~~vlGe~s~-~lR~~~m~DlIf~g~~~~~~~~~A~V~l 79 (247)
T cd03275 1 LKRLELENFKSYKGRHVIGPFDRFTCIIGPNGSGKSNLMDAISFVLGEKSS-HLRSKNLKDLIYRARVGKPDSNSAYVTA 79 (247)
T ss_pred CCEEEECCCCCCCCCEEECCCCCCEEEECCCCCCHHHHHHHHHHHHCCCHH-HHCCCCCCEEEECCCCCCCCCCEEEEEE
T ss_conf 944898075367898685489983799899877658889999999656623-3064561127865887889985489999
Q ss_pred EEEECCCEEE
Q ss_conf 8996285567
Q gi|254780640|r 99 CMAVPRCKYQ 108 (110)
Q Consensus 99 ~~~v~~~~y~ 108 (110)
T Consensus 80 ~f~n~~~ev~ 89 (247)
T cd03275 80 VYEDDDGEEK 89 (247)
T ss_pred EEECCCCEEE
T ss_conf 9988998599