HHsearch alignment for GI: 254780640 and conserved domain: cd03279

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

Probab=99.86  E-value=9.4e-22  Score=128.57  Aligned_cols=84  Identities=27%  Similarity=0.463  Sum_probs=75.2

Q ss_pred             EEEEEEEEECEECCCCCEEEECCC----CEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCC----HHHHHHCCCCCCCEE
Q ss_conf             899899995401368317998689----869999079865789999999985797756433----133310244574127
Q gi|254780640|r   27 FKLLDIEISHFRGFTEIQKIEFAD----HLTIVNGQNGYGKSSLSEAIEWLFYGYTQRRKH----GDSIKKRSIKTPMPM   98 (110)
Q Consensus        27 ~kl~~i~i~nFr~f~~~~~i~f~~----~~~~i~G~Ng~GKStil~ai~~~l~g~~~~~~~----~d~i~~~s~~~pi~l   98 (110)
T Consensus         1 Mk~~~L~l~nF~~y~g~~~IDF~~~~~~~lflI~G~nGsGKSTIlDAI~~aLYGk~~r~~~~~~~~~~~~~ge~~aeV~f   80 (213)
T cd03279           1 MKPLKLELKNFGPFREEQVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSF   80 (213)
T ss_pred             CEEEEEEEECCCCCCCCEEEECCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf             90579999775045897178487678788899988999978899999999983888233664100024456784499999


Q ss_pred             EEEECCCEEEEC
Q ss_conf             899628556739
Q gi|254780640|r   99 CMAVPRCKYQLK  110 (110)
Q Consensus        99 ~~~v~~~~y~~~  110 (110)
T Consensus        81 eF~~g~~~YrV~   92 (213)
T cd03279          81 TFQLGGKKYRVE   92 (213)
T ss_pred             EEEECCEEEEEE
T ss_conf             999778688998