HHsearch alignment for GI: 254780640 and conserved domain: cd03293
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.45 E-value=0.00011 Score=43.15 Aligned_cols=32 Identities=25% Similarity=0.337 Sum_probs=25.6
Q ss_pred EEECCC-CEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 998689-86999907986578999999998579
Q gi|254780640|r 45 KIEFAD-HLTIVNGQNGYGKSSLSEAIEWLFYG 76 (110)
Q Consensus 45 ~i~f~~-~~~~i~G~Ng~GKStil~ai~~~l~g 76 (110)
T Consensus 24 sl~i~~Ge~~~iiGpsGsGKSTLl~~i~Gl~~p 56 (220)
T cd03293 24 SLSVEEGEFVALVGPSGCGKSTLLRIIAGLERP 56 (220)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 889879989999999995799999999759998