HHsearch alignment for GI: 254780640 and conserved domain: pfam00488
>pfam00488 MutS_V MutS domain V. This domain is found in proteins of the MutS family (DNA mismatch repair proteins) and is found associated with pfam01624, pfam05188, pfam05192 and pfam05190. The mutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair; other members of the family included the eukaryotic MSH 1,2,3, 4,5 and 6 proteins. These have various roles in DNA repair and recombination. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. The aligned region corresponds with domain V of Thermus aquaticus MutS, which contains a Walker A motif, and is structurally similar to the ATPase domain of ABC transporters.
Probab=96.17 E-value=0.0057 Score=34.63 Aligned_cols=30 Identities=17% Similarity=0.389 Sum_probs=23.2
Q ss_pred EEECCC---CEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 998689---869999079865789999999985
Q gi|254780640|r 45 KIEFAD---HLTIVNGQNGYGKSSLSEAIEWLF 74 (110)
Q Consensus 45 ~i~f~~---~~~~i~G~Ng~GKStil~ai~~~l 74 (110)
T Consensus 34 di~l~~~~~~~~iiTGpN~sGKSt~Lk~igl~~ 66 (234)
T pfam00488 34 DVSLGKERSRILLITGPNMGGKSTYLRQVALIV 66 (234)
T ss_pred EEEECCCCEEEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 589779961699997887776199999999999