HHsearch alignment for GI: 254780640 and conserved domain: pfam02463
>pfam02463 SMC_N RecF/RecN/SMC N terminal domain. This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Probab=99.80 E-value=8.6e-20 Score=118.75 Aligned_cols=75 Identities=23% Similarity=0.362 Sum_probs=58.1
Q ss_pred EEEEEEEECEECCCCCEEEECCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCC----CCHHHHHHCCCC-----CCCEE
Q ss_conf 998999954013683179986898699990798657899999999857977564----331333102445-----74127
Q gi|254780640|r 28 KLLDIEISHFRGFTEIQKIEFADHLTIVNGQNGYGKSSLSEAIEWLFYGYTQRR----KHGDSIKKRSIK-----TPMPM 98 (110)
Q Consensus 28 kl~~i~i~nFr~f~~~~~i~f~~~~~~i~G~Ng~GKStil~ai~~~l~g~~~~~----~~~d~i~~~s~~-----~pi~l 98 (110)
T Consensus 1 yIk~i~i~gFKSy~~~~~i~f~~gft~IVGpNGSGKSNi~DAI~fVLG~~s~k~lR~~~~~dLI~~g~~~~~~~~A~V~l 80 (1162)
T pfam02463 1 YLKRIEIEGFKSYAKTVILPFSPGFTAIVGPNGSGKSNILDAILFVLGERSAKSLRSERLSDLIHYSKSGAFVNSAEVTI 80 (1162)
T ss_pred CCCEEEEECCCCCCCCEECCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHCCCCHHHHEECCCCCCCCCEEEEEE
T ss_conf 97479970830899996458999917888999987788999999985997542316015888702899999986689999
Q ss_pred EEEE
Q ss_conf 8996
Q gi|254780640|r 99 CMAV 102 (110)
Q Consensus 99 ~~~v 102 (110)
T Consensus 81 ~fdn 84 (1162)
T pfam02463 81 TFDN 84 (1162)
T ss_pred EEEC
T ss_conf 9987