HHsearch alignment for GI: 254780640 and conserved domain: pfam02463

>pfam02463 SMC_N RecF/RecN/SMC N terminal domain. This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Probab=99.80  E-value=8.6e-20  Score=118.75  Aligned_cols=75  Identities=23%  Similarity=0.362  Sum_probs=58.1

Q ss_pred             EEEEEEEECEECCCCCEEEECCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCC----CCHHHHHHCCCC-----CCCEE
Q ss_conf             998999954013683179986898699990798657899999999857977564----331333102445-----74127
Q gi|254780640|r   28 KLLDIEISHFRGFTEIQKIEFADHLTIVNGQNGYGKSSLSEAIEWLFYGYTQRR----KHGDSIKKRSIK-----TPMPM   98 (110)
Q Consensus        28 kl~~i~i~nFr~f~~~~~i~f~~~~~~i~G~Ng~GKStil~ai~~~l~g~~~~~----~~~d~i~~~s~~-----~pi~l   98 (110)
T Consensus         1 yIk~i~i~gFKSy~~~~~i~f~~gft~IVGpNGSGKSNi~DAI~fVLG~~s~k~lR~~~~~dLI~~g~~~~~~~~A~V~l   80 (1162)
T pfam02463         1 YLKRIEIEGFKSYAKTVILPFSPGFTAIVGPNGSGKSNILDAILFVLGERSAKSLRSERLSDLIHYSKSGAFVNSAEVTI   80 (1162)
T ss_pred             CCCEEEEECCCCCCCCEECCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHCCCCHHHHEECCCCCCCCCEEEEEE
T ss_conf             97479970830899996458999917888999987788999999985997542316015888702899999986689999


Q ss_pred             EEEE
Q ss_conf             8996
Q gi|254780640|r   99 CMAV  102 (110)
Q Consensus        99 ~~~v  102 (110)
T Consensus        81 ~fdn   84 (1162)
T pfam02463        81 TFDN   84 (1162)
T ss_pred             EEEC
T ss_conf             9987