HHsearch alignment for GI: 254780640 and conserved domain: pfam04310
>pfam04310 MukB MukB N-terminal. This family represents the N-terminal region of MukB, one of a group of bacterial proteins essential for the movement of nucleoids from mid-cell towards the cell quarters (i.e. chromosome partitioning). The structure of the N-terminal domain consists of an antiparallel six-stranded beta sheet surrounded by one helix on one side and by five helices on the other side. It contains an exposed Walker A loop in an unexpected helix-loop-helix motif (in other proteins, Walker A motifs generally adopt a P loop conformation as part of a strand-loop-helix motif embedded in a conserved topology of alternating helices and (parallel) beta strands).
Probab=98.08 E-value=4.9e-06 Score=49.95 Aligned_cols=49 Identities=22% Similarity=0.333 Sum_probs=43.3
Q ss_pred EEEEEEEEECEECCCCCEEEECCCCEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 89989999540136831799868986999907986578999999998579
Q gi|254780640|r 27 FKLLDIEISHFRGFTEIQKIEFADHLTIVNGQNGYGKSSLSEAIEWLFYG 76 (110)
Q Consensus 27 ~kl~~i~i~nFr~f~~~~~i~f~~~~~~i~G~Ng~GKStil~ai~~~l~g 76 (110)
T Consensus 5 ~k~rSLtlVNwNGffAR-TfdLd~lvttLsG~NGAGKsT~m~Af~talIP 53 (227)
T pfam04310 5 GKFQSLTLINWNGFFAR-TFDIDELVTTLSGGNGAGKSTTMAAFITALIP 53 (227)
T ss_pred CCCCEEEEEEECCEEEE-EEECCEEEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 55434789856367767-74021026886447876548799999998666