BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780641|ref|YP_003065054.1| hypothetical protein CLIBASIA_02640 [Candidatus Liberibacter asiaticus str. psy62] (121 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done >gi|254780641|ref|YP_003065054.1| hypothetical protein CLIBASIA_02640 [Candidatus Liberibacter asiaticus str. psy62] gi|254040318|gb|ACT57114.1| hypothetical protein CLIBASIA_02640 [Candidatus Liberibacter asiaticus str. psy62] Length = 121 Score = 252 bits (643), Expect = 2e-65, Method: Composition-based stats. Identities = 121/121 (100%), Positives = 121/121 (100%) Query: 1 MQISAKIEFLDGQKYTIARQMHEKGEGSFTLIDDIPSGNDFKTIGAQSLEFFYPVVAQKE 60 MQISAKIEFLDGQKYTIARQMHEKGEGSFTLIDDIPSGNDFKTIGAQSLEFFYPVVAQKE Sbjct: 1 MQISAKIEFLDGQKYTIARQMHEKGEGSFTLIDDIPSGNDFKTIGAQSLEFFYPVVAQKE 60 Query: 61 LQSFIHITPKNRRDKLSDILGFGEMTSLKTALRELQQSLQSRKPNMVSAAMDPLKKCVGT 120 LQSFIHITPKNRRDKLSDILGFGEMTSLKTALRELQQSLQSRKPNMVSAAMDPLKKCVGT Sbjct: 61 LQSFIHITPKNRRDKLSDILGFGEMTSLKTALRELQQSLQSRKPNMVSAAMDPLKKCVGT 120 Query: 121 R 121 R Sbjct: 121 R 121 >gi|189485480|ref|YP_001956421.1| hypothetical protein TGRD_477 [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287439|dbj|BAG13960.1| conserved hypothetical protein [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 807 Score = 38.9 bits (89), Expect = 0.25, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 55/103 (53%), Gaps = 6/103 (5%) Query: 3 ISAKIEFLDGQKYTIARQMHEKGEGSFTLIDDIPSGNDFKTIGAQSLEFFYPVVAQKELQ 62 I++++ D Q + I++++ KG L+ D+ + ++ + ++ ++ L+ Sbjct: 77 INSEVYIKDNQNFNISKKLFYKGS---KLVSDLSNTSETYMLASEKENL---LIRYYLLR 130 Query: 63 SFIHITPKNRRDKLSDILGFGEMTSLKTALRELQQSLQSRKPN 105 +F+ T ++ LSDI+GF E+T K L++ S++++ N Sbjct: 131 NFVSQTKSDKLKLLSDIIGFSEVTKTKEILKKTFNSVKNKIKN 173 >gi|15606061|ref|NP_213438.1| chromosome assembly protein [Aquifex aeolicus VF5] gi|2983243|gb|AAC06839.1| chromosome assembly protein homolog [Aquifex aeolicus VF5] Length = 1156 Score = 38.1 bits (87), Expect = 0.38, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 3/91 (3%) Query: 10 LDGQKYTIARQMHEKGEGSFTLIDDIPSGNDFKTIGAQS--LEFFYPVVAQKELQSFIHI 67 ++ ++ I+R++ + G F + + D K A++ E Y VV Q ++ F+ + Sbjct: 95 VEDEEVVISRKVSKDGRSIFKINGQVVRERDLKDFLAKAGIYETAYNVVYQGDIVKFLKM 154 Query: 68 TPKNRRDKLSDILGFGEMTSLK-TALRELQQ 97 TP RR + +I G GE K AL EL + Sbjct: 155 TPVERRKIIEEISGIGEYERKKEKALEELAE 185 >gi|225848784|ref|YP_002728948.1| chromosome segregation protein SMC [Sulfurihydrogenibium azorense Az-Fu1] gi|225644251|gb|ACN99301.1| chromosome segregation protein SMC [Sulfurihydrogenibium azorense Az-Fu1] Length = 1171 Score = 37.0 bits (84), Expect = 0.82, Method: Composition-based stats. Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 1/47 (2%) Query: 53 YPVVAQKELQSFIHITPKNRRDKLSDILGFGEMTSLK-TALRELQQS 98 Y +V Q ++ F+ +TP RRD +SDI G + K A+++L QS Sbjct: 139 YNIVTQGDIYKFVKMTPSERRDLISDIAGITQYEERKQKAIQDLNQS 185 >gi|170726418|ref|YP_001760444.1| putative PAS/PAC sensor protein [Shewanella woodyi ATCC 51908] gi|169811765|gb|ACA86349.1| putative PAS/PAC sensor protein [Shewanella woodyi ATCC 51908] Length = 872 Score = 37.0 bits (84), Expect = 0.83, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 4/65 (6%) Query: 53 YPVVAQKELQSFIHITPKNRRDKLSDILGFGEMTSLKTALR----ELQQSLQSRKPNMVS 108 +P +Q++L S + TP N+RDKL+ ++ +L TA +L + QS + ++VS Sbjct: 298 HPAFSQEQLSSLLQSTPVNQRDKLAALINLNASKTLNTAELITSFKLSPNEQSNQASLVS 357 Query: 109 AAMDP 113 + P Sbjct: 358 IFLMP 362 >gi|225851450|ref|YP_002731684.1| chromosome segregation protein SMC [Persephonella marina EX-H1] gi|225645745|gb|ACO03931.1| chromosome segregation protein SMC [Persephonella marina EX-H1] Length = 1162 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 16/105 (15%) Query: 10 LDGQKYTIARQMHEKGEGSFTLIDDIPSGNDFKTIGAQSLEFF-------YPVVAQKELQ 62 L+ ++ +I R++ G+ ++ + +G K + L + Y +V Q ++ Sbjct: 94 LNDEEVSIYRKVEHNGKSTYRI-----NGRPAKQYEVEELLSYAGIPKQGYNIVTQGDIF 148 Query: 63 SFIHITPKNRRDKLSDILGFGEMTSLKTA----LRELQQSLQSRK 103 F+ +TP RRD LS+I G E K L E ++ +QS K Sbjct: 149 RFVKMTPSERRDLLSEIAGITEYEEKKEKALKDLTETEEKIQSAK 193 >gi|226226181|ref|YP_002760287.1| exonuclease [Gemmatimonas aurantiaca T-27] gi|226089372|dbj|BAH37817.1| exonuclease [Gemmatimonas aurantiaca T-27] Length = 800 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 15/115 (13%) Query: 10 LDGQKYTIARQMHEKGEGSFTLIDD--------IPSGNDF--KTIGAQSLEFFYP-VVAQ 58 L G +Y +AR + G+ +DD + ++F + +G EFF+ Q Sbjct: 80 LAGHRYRVARSL----SGAECFLDDAEQPIASTVTGVSEFMQRRLGMTRSEFFHTYFTGQ 135 Query: 59 KELQSFIHITPKNRRDKLSDILGFGEMTSLKTALRELQQSLQSRKPNMVSAAMDP 113 KEL + P R LS +LG+ ++ + +RE +++L + + DP Sbjct: 136 KELDVMSALGPAERARFLSRVLGYDRISGAQEFVRERRRTLAAEINGLRQGMSDP 190 >gi|124249272|ref|NP_001074375.1| NEDD8 ultimate buster 1 [Bos taurus] gi|115545455|gb|AAI22682.1| Negative regulator of ubiquitin-like proteins 1 [Bos taurus] gi|296488172|gb|DAA30285.1| NEDD8 ultimate buster-1 [Bos taurus] Length = 614 Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 5/53 (9%) Query: 37 SGND-FKTIGAQSLEFFYPVVAQKE----LQSFIHITPKNRRDKLSDILGFGE 84 +GN+ +KT G ++E F P +K+ L++ +HIT + R K+++ GF E Sbjct: 72 TGNEHYKTTGIATIEVFLPARLKKDRKNLLETHLHITGRELRSKIAETFGFQE 124 >gi|161528753|ref|YP_001582579.1| SMC domain-containing protein [Nitrosopumilus maritimus SCM1] gi|160340054|gb|ABX13141.1| SMC domain protein [Nitrosopumilus maritimus SCM1] Length = 693 Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 27/101 (26%), Positives = 49/101 (48%), Gaps = 18/101 (17%) Query: 6 KIEFLDGQKYTIARQMHEKGEGSFTLIDDIPSGNDFKTIGAQSLEFFYPVVAQKELQSFI 65 KIE G++ M ++ E + L DF+ + S +V Q EL + I Sbjct: 103 KIEIAAGERKQFGESMTQEVEKAIGL--------DFEKLKVAS------IVQQGELNAII 148 Query: 66 HITPKNRRDKLSDILGFGEM----TSLKTALRELQQSLQSR 102 + PK ++ L+ I+G ++ S+KT +E ++S++SR Sbjct: 149 NAKPKEFKELLNAIIGIDKLDVASESMKTVNKEFRESIRSR 189 >gi|119578263|gb|EAW57859.1| hCG2040761 [Homo sapiens] Length = 119 Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%) Query: 7 IEFLDGQKYTIARQMHEKGEGSFTLIDDIPSGNDFK----TIGAQSLEFFYPVVAQKELQ 62 ++F +G+K T R++H F L DIP+ K + Q+ FF+P++ L+ Sbjct: 45 LQFFNGRKNTFKRRLHHTRNSLFRLATDIPNKPTLKIKLSSRNTQTFFFFFPIINLPTLK 104 Query: 63 SFI 65 + + Sbjct: 105 AVL 107 >gi|163784336|ref|ZP_02179239.1| hypothetical protein HG1285_04758 [Hydrogenivirga sp. 128-5-R1-1] gi|159880397|gb|EDP73998.1| hypothetical protein HG1285_04758 [Hydrogenivirga sp. 128-5-R1-1] Length = 666 Score = 35.4 bits (80), Expect = 2.7, Method: Composition-based stats. Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 1/47 (2%) Query: 53 YPVVAQKELQSFIHITPKNRRDKLSDILGFGEMTSLK-TALRELQQS 98 Y +V Q ++ FI +TP RRD +S+I G + K AL++L+++ Sbjct: 139 YNIVTQGDIFKFIKMTPSERRDLISEIAGITDYEERKEKALKDLEET 185 >gi|126341060|ref|XP_001364145.1| PREDICTED: hypothetical protein isoform 1 [Monodelphis domestica] Length = 614 Score = 35.4 bits (80), Expect = 2.7, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 5/53 (9%) Query: 37 SGND-FKTIGAQSLEFFYPVVAQKE----LQSFIHITPKNRRDKLSDILGFGE 84 +GN+ FKT G ++E F P +K+ L++ +HIT K R ++++ GF E Sbjct: 72 TGNENFKTTGVATIEVFLPPRLRKDKKSLLETKLHITGKELRSQIAESFGFQE 124 >gi|194210158|ref|XP_001504715.2| PREDICTED: negative regulator of ubiquitin-like proteins 1 [Equus caballus] Length = 600 Score = 35.4 bits (80), Expect = 2.8, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 39/68 (57%), Gaps = 6/68 (8%) Query: 37 SGND-FKTIGAQSLEFFYPVVAQKE----LQSFIHITPKNRRDKLSDILGFGEMTSLKTA 91 +GN+ +KT G ++E F P +K+ L++ +HIT + R K+++ GF E + +K Sbjct: 72 TGNEHYKTTGIATIEVFLPPRVRKDRKNRLETRLHITGRELRSKIAETFGFQE-SYIKIV 130 Query: 92 LRELQQSL 99 + + Q L Sbjct: 131 INKKQLQL 138 >gi|159163425|pdb|1WJU|A Chain A, Solution Structure Of N-Terminal Ubiquitin-Like Domain Of Human Nedd8 Ultimate Buster-1 Length = 100 Score = 35.0 bits (79), Expect = 3.1, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 4/52 (7%) Query: 37 SGNDFKTIGAQSLEFFYPVVAQKE----LQSFIHITPKNRRDKLSDILGFGE 84 SG++++T G ++E F P +K+ L++ +HIT + R K+++ G E Sbjct: 6 SGDNYRTTGIATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQE 57 >gi|154249899|ref|YP_001410724.1| chromosome segregation protein SMC [Fervidobacterium nodosum Rt17-B1] gi|154153835|gb|ABS61067.1| chromosome segregation protein SMC [Fervidobacterium nodosum Rt17-B1] Length = 1164 Score = 34.7 bits (78), Expect = 3.9, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 2/73 (2%) Query: 13 QKYTIARQMHEKGEGSFTLIDDIPSGNDFKTIGAQSL--EFFYPVVAQKELQSFIHITPK 70 ++ +IAR++ G G + L DI D + Q + Y ++ Q ++ + TP+ Sbjct: 89 ERVSIARELSRDGTGKYLLNGDIARLKDIRDFLMQHGYGKNPYSIIGQGQIDRIVSSTPE 148 Query: 71 NRRDKLSDILGFG 83 N R + +I G G Sbjct: 149 NLRTMIEEIAGIG 161 >gi|301759375|ref|XP_002915529.1| PREDICTED: NEDD8 ultimate buster 1-like isoform 2 [Ailuropoda melanoleuca] Length = 600 Score = 34.7 bits (78), Expect = 4.2, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 5/53 (9%) Query: 37 SGND-FKTIGAQSLEFFYPVVAQKE----LQSFIHITPKNRRDKLSDILGFGE 84 +GN+ +KT G ++E F P +K+ L++ +HIT + R K+++ GF E Sbjct: 72 TGNENYKTTGIATIEVFLPPRLRKDRKNLLETRLHITGRELRSKIAETFGFQE 124 >gi|301759373|ref|XP_002915528.1| PREDICTED: NEDD8 ultimate buster 1-like isoform 1 [Ailuropoda melanoleuca] gi|281339849|gb|EFB15433.1| hypothetical protein PANDA_003537 [Ailuropoda melanoleuca] Length = 614 Score = 34.7 bits (78), Expect = 4.2, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 5/53 (9%) Query: 37 SGND-FKTIGAQSLEFFYPVVAQKE----LQSFIHITPKNRRDKLSDILGFGE 84 +GN+ +KT G ++E F P +K+ L++ +HIT + R K+++ GF E Sbjct: 72 TGNENYKTTGIATIEVFLPPRLRKDRKNLLETRLHITGRELRSKIAETFGFQE 124 >gi|73979001|ref|XP_532765.2| PREDICTED: similar to NEDD8 ultimate buster-1 (NY-REN-18 antigen) [Canis familiaris] Length = 621 Score = 34.7 bits (78), Expect = 4.2, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 5/53 (9%) Query: 37 SGND-FKTIGAQSLEFFYPVVAQKE----LQSFIHITPKNRRDKLSDILGFGE 84 +GN+ +KT G ++E F P +K+ L++ +HIT + R K+++ GF E Sbjct: 72 TGNENYKTTGIATIEVFLPPRLRKDRKNLLETRLHITGRELRSKIAETFGFQE 124 >gi|297821489|ref|XP_002878627.1| hypothetical protein ARALYDRAFT_343817 [Arabidopsis lyrata subsp. lyrata] gi|297324466|gb|EFH54886.1| hypothetical protein ARALYDRAFT_343817 [Arabidopsis lyrata subsp. lyrata] Length = 920 Score = 34.7 bits (78), Expect = 4.5, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 7/65 (10%) Query: 12 GQKYTIARQMHEKGEGSFTLIDD----IPSGNDFKTIGAQSL---EFFYPVVAQKELQSF 64 G+K Q GE F LI IP + K +G SL EF +PV+ Q ++ + Sbjct: 450 GEKQVATFQCEPTGELVFKLISSSPSKIPVSREPKNLGFASLSLKEFLFPVITQLSVEKW 509 Query: 65 IHITP 69 + +TP Sbjct: 510 LELTP 514 >gi|319789740|ref|YP_004151373.1| SMC domain protein [Thermovibrio ammonificans HB-1] gi|317114242|gb|ADU96732.1| SMC domain protein [Thermovibrio ammonificans HB-1] Length = 894 Score = 34.3 bits (77), Expect = 5.5, Method: Composition-based stats. Identities = 34/109 (31%), Positives = 51/109 (46%), Gaps = 15/109 (13%) Query: 6 KIEFL-DGQKYTIARQMHEKGEGSFTLIDD---IPSGNDFKTIGAQSLE--------FFY 53 K+EFL G+ YT+ R++H + L +D + G K + A LE F Sbjct: 72 KVEFLYKGKLYTLERRIHVRRSSEAELYEDGRLVARG--VKQVKAYLLENLGLDGNLFKN 129 Query: 54 PV-VAQKELQSFIHITPKNRRDKLSDILGFGEMTSLKTALRELQQSLQS 101 V V Q E+ TPK RR L+ +LG E+ L ++E Q L++ Sbjct: 130 TVFVPQGEILDLFKGTPKERRKVLNRLLGLEEIGELHRRIKEELQKLKN 178 >gi|42522699|ref|NP_968079.1| chromosome segregation SMC protein [Bdellovibrio bacteriovorus HD100] gi|39573895|emb|CAE79072.1| chromosome segregation SMC protein [Bdellovibrio bacteriovorus HD100] Length = 1195 Score = 33.9 bits (76), Expect = 8.4, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 48/104 (46%), Gaps = 9/104 (8%) Query: 8 EFLDGQKYTIARQMHEKGEGSFTLIDDIPSGNDFKTI----GAQSLEFFYPVVAQKELQS 63 +++ + + R++H GEG + + + D + I GA S F ++AQ + Sbjct: 94 KYIKHSEIMVTRRLHRNGEGEYFINKEPARLKDLQEIFMDTGAGSKGF--SIIAQGMIGK 151 Query: 64 FIHITPKNRRDKLSDILGFGEMTSLKTALRELQQSLQSRKPNMV 107 I P++RR + + G +T K +E Q+ L + N+V Sbjct: 152 IITAKPEDRRMLIEEAAG---ITKFKARKKESQRKLVATDQNLV 192 >gi|288817659|ref|YP_003432006.1| chromosome segregation ATPase [Hydrogenobacter thermophilus TK-6] gi|288787058|dbj|BAI68805.1| chromosome segregation ATPase [Hydrogenobacter thermophilus TK-6] gi|308751257|gb|ADO44740.1| chromosome segregation protein SMC [Hydrogenobacter thermophilus TK-6] Length = 1154 Score = 33.9 bits (76), Expect = 8.5, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 2/75 (2%) Query: 17 IARQMHEKGEGSFTLIDDIPSGNDFKTIGAQS--LEFFYPVVAQKELQSFIHITPKNRRD 74 I+R++ + G F + + D K + A++ E Y +V Q ++ F+ +TP RR Sbjct: 100 ISRKVDKDGRSIFRINGSVIRERDLKDLLAKAGLYENAYNIVLQGDVIRFLRMTPVERRK 159 Query: 75 KLSDILGFGEMTSLK 89 + ++ G GE K Sbjct: 160 LIEEVAGIGEYEEKK 174 >gi|295094865|emb|CBK83956.1| RecF/RecN/SMC N terminal domain. [Coprococcus sp. ART55/1] Length = 220 Score = 33.5 bits (75), Expect = 9.6, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 57/118 (48%), Gaps = 15/118 (12%) Query: 10 LDGQKYTIARQMHEKGEGSFTLIDDIPSGND-----FKT-IGAQSLEFFYPVVAQKELQS 63 +D + T+AR+++ GE + + + D F T IG + Y ++ Q +++ Sbjct: 93 IDYNEVTVARRVYRSGESEYLINGTVSRLKDVYSLFFDTGIGKEG----YSIIGQGQIEK 148 Query: 64 FIHITPKNRRDKLSDILGFGEMTSLKTALRELQQSLQSRKPNM--VSAAMDPLKKCVG 119 ++ P+ RR+ + G + K A ++SL++ + N+ V+ + L+K VG Sbjct: 149 ILNGKPEERRELFDEAAGIVKFKKNKAA---AEKSLEAERDNLSRVNDILKELEKQVG 203 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.318 0.134 0.372 Lambda K H 0.267 0.0411 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 998,592,983 Number of Sequences: 14124377 Number of extensions: 35055595 Number of successful extensions: 87303 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 22 Number of HSP's that attempted gapping in prelim test: 87294 Number of HSP's gapped (non-prelim): 28 length of query: 121 length of database: 4,842,793,630 effective HSP length: 88 effective length of query: 33 effective length of database: 3,599,848,454 effective search space: 118794998982 effective search space used: 118794998982 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 75 (33.5 bits)