RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780641|ref|YP_003065054.1| hypothetical protein
CLIBASIA_02640 [Candidatus Liberibacter asiaticus str. psy62]
         (121 letters)



>gnl|CDD|30768 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
           recombination, and repair].
          Length = 908

 Score = 28.1 bits (62), Expect = 0.69
 Identities = 22/118 (18%), Positives = 47/118 (39%), Gaps = 15/118 (12%)

Query: 4   SAKIEF-LDGQKYTIARQMHEKGEGSFTLIDDIPSGNDFKTIGAQSLEFFYP-------- 54
           S ++EF ++G+KY I R+       S   +  I    +    G + +             
Sbjct: 73  SVELEFEVNGKKYRIEREFRRGRGQSTGSLQIIEVDGERIADGKKDVNEKIEELLGLDKD 132

Query: 55  ------VVAQKELQSFIHITPKNRRDKLSDILGFGEMTSLKTALRELQQSLQSRKPNM 106
                  + Q E  +F+   PK R++ L ++ G  +   L   L+E+ +  +++   +
Sbjct: 133 TFTRSVYLPQGEFDAFLKSKPKERKEILDELFGLEKYEKLSELLKEVIKEAKAKIEEL 190


>gnl|CDD|113014 pfam04224, DUF417, Protein of unknown function, DUF417.  This
          family of uncharacterized proteins appears to be
          restricted to proteobacteria.
          Length = 153

 Score = 26.6 bits (59), Expect = 1.8
 Identities = 11/33 (33%), Positives = 16/33 (48%)

Query: 54 PVVAQKELQSFIHITPKNRRDKLSDILGFGEMT 86
          P V+   L SF++   KN    +S +LG  E  
Sbjct: 44 PFVSNSPLMSFLYEFLKNGTYGVSYLLGITETI 76


>gnl|CDD|147698 pfam05686, DUF821, Arabidopsis thaliana protein of unknown function
           (DUF821).  This family consists of a group of
           Arabidopsis thaliana proteins with no known function.
          Length = 396

 Score = 25.9 bits (57), Expect = 2.8
 Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 5/37 (13%)

Query: 44  IGAQSLEFFYPVVAQKELQSFIHITPKNRRDKLSDIL 80
           +G +  +FFY     + LQ ++H  P    D   D+ 
Sbjct: 244 VGPEYYDFFY-----RGLQPWVHYWPIKSDDDCRDLK 275


>gnl|CDD|73026 cd03267, ABC_NatA_like, Similar in sequence to NatA, this is the
           ATPase component of a bacterial ABC-type Na+ transport
           system called NatAB, which catalyzes ATP-dependent
           electrogenic Na+ extrusion without mechanically coupled
           to proton or K+ uptake.  NatB possess six putative
           membrane spanning regions at its C-terminus.  In B.
           subtilis, NatAB is inducible by agents such as ethanol
           and protonophores, which lower the protonmotive force
           across the membrane.  The closest sequence similarity to
           NatA is exhibited by DrrA of the two-component
           daunomycin- and doxorubicin-efflux system.  Hence, the
           functional NatAB is presumably assembled with two copies
           of the single ATP-binding protein and the single
           intergral membrane protein..
          Length = 236

 Score = 25.2 bits (55), Expect = 4.3
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 4/42 (9%)

Query: 70  KNRRDKLSDILGFGEMTSLKTALRELQQSLQSRKPNMVSAAM 111
           K R D+LS++L   E+  L T +R+L  SL  R    ++AA+
Sbjct: 131 KKRLDELSELLDLEEL--LDTPVRQL--SLGQRMRAEIAAAL 168


>gnl|CDD|34837 COG5240, SEC21, Vesicle coat complex COPI, gamma subunit
           [Intracellular trafficking and secretion].
          Length = 898

 Score = 25.1 bits (54), Expect = 5.0
 Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 7/64 (10%)

Query: 55  VVAQKELQSFIHITPKNRRDKLSDILGFGEMTSLKTALRELQQSLQSRKPNMVSAAMDPL 114
            V  KE++S I  + +NR      I  +   T LKT   E    L +  P+ V    D  
Sbjct: 339 SVCNKEVESLI--SDENR-----TISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGF 391

Query: 115 KKCV 118
           K   
Sbjct: 392 KIIA 395


>gnl|CDD|48392 cd02146, NfsA_FRP, This family contains NADPH-dependent flavin
          reductase and oxygen-insensitive nitroreductase. These
          enzymes are homodimeric flavoproteins that contain one
          FMN per monomer as a cofactor. Flavin reductase
          catalyzes the reduction of flavin by using NADPH as an
          electron donor. Oxygen-insensitive nitroreductase, such
          as NfsA protein in Escherichia coli, catalyzes
          reduction of nitrocompounds using NADPH as electron
          donor..
          Length = 229

 Score = 24.8 bits (54), Expect = 6.0
 Identities = 6/19 (31%), Positives = 11/19 (57%)

Query: 63 SFIHITPKNRRDKLSDILG 81
          S I +T    + KL+++ G
Sbjct: 44 SVIVVTDPELKAKLAELAG 62


>gnl|CDD|147367 pfam05152, DUF705, Protein of unknown function (DUF705).  This
           family contains several uncharacterized Baculovirus
           proteins.
          Length = 297

 Score = 24.5 bits (54), Expect = 6.8
 Identities = 6/15 (40%), Positives = 11/15 (73%), Gaps = 1/15 (6%)

Query: 27  GSFTLIDDIPSGNDF 41
            + TL+DD+ S N++
Sbjct: 247 KTITLVDDLKS-NNY 260


>gnl|CDD|36715 KOG1502, KOG1502, KOG1502, Flavonol reductase/cinnamoyl-CoA
           reductase [Defense mechanisms].
          Length = 327

 Score = 24.5 bits (53), Expect = 7.0
 Identities = 9/51 (17%), Positives = 20/51 (39%)

Query: 53  YPVVAQKELQSFIHITPKNRRDKLSDILGFGEMTSLKTALRELQQSLQSRK 103
           YP+  +   +    +T      +    LG  +   L+  L +  +SL+ + 
Sbjct: 274 YPIPKKNAEEHEGFLTSFKVSSEKLKSLGGFKFRPLEETLSDTVESLREKG 324


>gnl|CDD|30557 COG0208, NrdF, Ribonucleotide reductase, beta subunit [Nucleotide
          transport and metabolism].
          Length = 348

 Score = 24.5 bits (53), Expect = 8.5
 Identities = 9/31 (29%), Positives = 17/31 (54%)

Query: 10 LDGQKYTIARQMHEKGEGSFTLIDDIPSGND 40
           +  KY  A ++++K   +F L ++I   ND
Sbjct: 29 WNPIKYPWALELYKKLTANFWLPEEIDLSND 59


>gnl|CDD|35433 KOG0212, KOG0212, KOG0212, Uncharacterized conserved protein
           [Function unknown].
          Length = 675

 Score = 24.1 bits (52), Expect = 8.6
 Identities = 17/70 (24%), Positives = 26/70 (37%), Gaps = 7/70 (10%)

Query: 19  RQMHEKGEGSF-TLIDDIPSGNDFKTIG------AQSLEFFYPVVAQKELQSFIHITPKN 71
           R + +     F   I   PS  D+  +        QS E    + A   +Q F+ I  ++
Sbjct: 225 RTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRD 284

Query: 72  RRDKLSDILG 81
               LS IL 
Sbjct: 285 LLLYLSGILT 294


>gnl|CDD|144894 pfam01470, Peptidase_C15, Pyroglutamyl peptidase. 
          Length = 203

 Score = 24.2 bits (53), Expect = 9.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)

Query: 86  TSLKTALRELQQSLQSRKPNMV 107
           TS K A   LQQ++   KP++V
Sbjct: 43  TSFKKAAEVLQQAIAEIKPDIV 64


>gnl|CDD|176999 CHL00059, atpA, ATP synthase CF1 alpha subunit.
          Length = 485

 Score = 24.2 bits (53), Expect = 9.4
 Identities = 10/17 (58%), Positives = 11/17 (64%)

Query: 72  RRDKLSDILGFGEMTSL 88
           R  KLS  LG G MT+L
Sbjct: 279 RAAKLSSQLGEGSMTAL 295


>gnl|CDD|33326 COG3523, IcmF, Uncharacterized protein conserved in bacteria
           [Function unknown].
          Length = 1188

 Score = 24.2 bits (52), Expect = 9.8
 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 16/67 (23%)

Query: 54  PVVAQKELQSFIHITPKNRRDK----------LSDILGFGEM------TSLKTALRELQQ 97
             V + E   F+ +  K RR +          +SD+L            +L+  L+EL++
Sbjct: 192 DEVDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRE 251

Query: 98  SLQSRKP 104
           +L +R P
Sbjct: 252 TLHARLP 258


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.318    0.134    0.372 

Gapped
Lambda     K      H
   0.267   0.0656    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,361,479
Number of extensions: 62938
Number of successful extensions: 152
Number of sequences better than 10.0: 1
Number of HSP's gapped: 152
Number of HSP's successfully gapped: 27
Length of query: 121
Length of database: 6,263,737
Length adjustment: 82
Effective length of query: 39
Effective length of database: 4,491,799
Effective search space: 175180161
Effective search space used: 175180161
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.6 bits)