RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780641|ref|YP_003065054.1| hypothetical protein
CLIBASIA_02640 [Candidatus Liberibacter asiaticus str. psy62]
(121 letters)
>gnl|CDD|162740 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent.
Length = 1164
Score = 29.3 bits (66), Expect = 0.26
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 53 YPVVAQKELQSFIHITPKNRRDKLSDILGFGEMTSLK-TALRELQQ 97
Y VV Q ++ FI ++P RR + +I G E K AL EL++
Sbjct: 136 YNVVLQGDVTDFISMSPVERRKIIDEIAGVAEFDRKKEKALEELEE 181
>gnl|CDD|162601 TIGR01916, F420_cofE, F420-0:gamma-glutamyl ligase. This model
represents an enzyme of coenzyme F(420) biosynthesis,
as catalyzed by MJ0768 of Methanococcus jannaschii and
by the N-terminal half of FbiB of Mycobacterium bovis
strain BCG. Note that only two glutamates are ligated
in M. jannaschii, but five to six in the Mycobacterium
lineage. In M. jannaschii, CofE catalyzes the
GTP-dependent addition of two L-glutamates.
Length = 243
Score = 26.6 bits (59), Expect = 1.6
Identities = 10/45 (22%), Positives = 18/45 (40%)
Query: 3 ISAKIEFLDGQKYTIARQMHEKGEGSFTLIDDIPSGNDFKTIGAQ 47
I+ DG +A + K EG +++I + I A+
Sbjct: 22 IAEAAPLEDGDVLVVASTVVSKAEGRIIRLEEITPSPEALEIAAR 66
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional.
Length = 880
Score = 26.5 bits (59), Expect = 1.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 56 VAQKELQSFIHITPKNRRDKLSDILGFG 83
V Q E+ I+ TP +R+D + D+L G
Sbjct: 135 VRQGEVNKLINATPSDRQDMIDDLLQLG 162
>gnl|CDD|180300 PRK05875, PRK05875, short chain dehydrogenase; Provisional.
Length = 276
Score = 26.7 bits (59), Expect = 1.7
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 10 LDGQKYTI---ARQMHEKGEGSFTLIDDIPSGNDFKTIGA 46
++G Y + AR++ G GSF I I + N + GA
Sbjct: 119 VNGTMYVLKHAARELVRGGGGSFVGISSIAASNTHRWFGA 158
>gnl|CDD|132298 TIGR03254, oxalate_oxc, oxalyl-CoA decarboxylase. In a number of
bacteria, including Oxalobacter formigenes from the
human gut, a two-gene operon of oxc (oxalyl-CoA
decarboxylase) and frc (formyl-CoA transferase) encodes
a system for degrading and therefore detoxifying
oxalate. Members of this family are the thiamine
pyrophosphate (TPP)-containing enzyme oxalyl-CoA
decarboxylase.
Length = 554
Score = 26.3 bits (58), Expect = 1.8
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
Query: 88 LKTALRELQQSLQSRKPNMVSAAMDP 113
LK AL E +L S KP +++A +DP
Sbjct: 517 LKAALNE---ALASGKPTLINAVIDP 539
>gnl|CDD|183738 PRK12775, PRK12775, putative trifunctional 2-polyprenylphenol
hydroxylase/glutamate synthase subunit beta/ferritin
domain-containing protein; Provisional.
Length = 1006
Score = 26.1 bits (57), Expect = 2.2
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 66 HITPKNRRDKLSDILGFGEMT---SLKTALRELQQSLQSRKPNMVS 108
H TP RD + F E+ SL+ AL+E ++ +Q KP ++
Sbjct: 298 HQTPMPERDAVERARNFKEVNLGYSLEDALQEAERCIQCAKPTCIA 343
>gnl|CDD|180770 PRK06946, PRK06946, lipid A biosynthesis lauroyl acyltransferase;
Provisional.
Length = 293
Score = 25.8 bits (57), Expect = 3.3
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 82 FG-EMTSLKTALRELQQSLQSRKPNMVSAAMD 112
FG EM S + R++ + L+ KP M+ A MD
Sbjct: 159 FGAEMVSRADSARQVLRWLRDGKPVMLGADMD 190
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
Length = 895
Score = 25.6 bits (56), Expect = 3.3
Identities = 13/51 (25%), Positives = 23/51 (45%)
Query: 56 VAQKELQSFIHITPKNRRDKLSDILGFGEMTSLKTALRELQQSLQSRKPNM 106
V Q E+ S I P R+ L +IL + L+++ L++ N+
Sbjct: 135 VGQGEMDSLISGDPAQRKKILDEILEINSLERNYDKLKDVIDMLRAEISNI 185
>gnl|CDD|177477 PHA02695, PHA02695, hypothetical protein; Provisional.
Length = 725
Score = 25.4 bits (55), Expect = 3.9
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 56 VAQKELQSFIHITPKNRRDKLSDILGFG 83
+ ++Q ++H RD++SD FG
Sbjct: 241 IRAGQVQEYLHYAEDYLRDRVSDTGAFG 268
>gnl|CDD|179957 PRK05183, hscA, chaperone protein HscA; Provisional.
Length = 616
Score = 25.1 bits (56), Expect = 4.8
Identities = 10/40 (25%), Positives = 19/40 (47%)
Query: 77 SDILGFGEMTSLKTALRELQQSLQSRKPNMVSAAMDPLKK 116
D+L E ++ A+ L++ Q + + AA+ L K
Sbjct: 551 GDLLSAAERAAIDAAMAALREVAQGDDADAIEAAIKALDK 590
>gnl|CDD|183956 PRK13293, PRK13293, F420-0--gamma-glutamyl ligase; Reviewed.
Length = 245
Score = 24.9 bits (55), Expect = 5.5
Identities = 12/45 (26%), Positives = 18/45 (40%)
Query: 3 ISAKIEFLDGQKYTIARQMHEKGEGSFTLIDDIPSGNDFKTIGAQ 47
I+ + + DG IA + K EG +DDI I +
Sbjct: 24 IAERYDLEDGDIIVIASTIVSKAEGRVIDLDDITPSERAIEIAKK 68
>gnl|CDD|105866 PRK12702, PRK12702, mannosyl-3-phosphoglycerate phosphatase;
Reviewed.
Length = 302
Score = 24.6 bits (53), Expect = 5.7
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 66 HITPKNRRDKLSDILGFGEMTSLKTA------LRELQQSLQSRKPNMVSAAMDP 113
HI + R+D D++GFG+ T+ + A L E +++ + + S + DP
Sbjct: 105 HILQQVRQDSHLDLIGFGDWTASELAAATGIPLEEAERAQKREYSEIFSYSGDP 158
>gnl|CDD|177634 PHA03398, PHA03398, viral phosphatase superfamily protein;
Provisional.
Length = 303
Score = 24.8 bits (55), Expect = 6.4
Identities = 6/15 (40%), Positives = 11/15 (73%), Gaps = 1/15 (6%)
Query: 27 GSFTLIDDIPSGNDF 41
+ TL+DD+ S N++
Sbjct: 253 KTITLVDDLKS-NNY 266
>gnl|CDD|180097 PRK05458, PRK05458, guanosine 5'-monophosphate oxidoreductase;
Provisional.
Length = 326
Score = 24.5 bits (54), Expect = 6.6
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 87 SLKTALRELQQSLQS 101
SLK L E++Q LQS
Sbjct: 281 SLKDTLTEMEQDLQS 295
>gnl|CDD|180356 PRK06030, PRK06030, hypothetical protein; Provisional.
Length = 124
Score = 24.7 bits (54), Expect = 6.6
Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 7/51 (13%)
Query: 58 QKELQSFIHITPKNRRDKLSDILGF-----GEMTSLKTALRELQQSLQSRK 103
+ L+ HI P RR++L ++ + A E+ L+ R+
Sbjct: 3 PQALERLWHIAPDKRRERLIELCEAVIDLLALAFGVSGA--EIASPLRGRR 51
>gnl|CDD|181658 PRK09120, PRK09120, p-hydroxycinnamoyl CoA hydratase/lyase;
Validated.
Length = 275
Score = 24.6 bits (54), Expect = 6.7
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 88 LKTALRELQQSLQSRKPNMVSAAMDPLKKC 117
L+ REL L + P ++ AA D K+
Sbjct: 195 LRARTRELAAKLLEKNPVVLRAAKDGFKRV 224
>gnl|CDD|183185 PRK11539, PRK11539, ComEC family competence protein; Provisional.
Length = 755
Score = 24.6 bits (54), Expect = 6.7
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 80 LGFGEMTSLKTALRELQQ 97
L FGE S+ ++ L +
Sbjct: 204 LAFGERLSVPKEIKNLLR 221
>gnl|CDD|181733 PRK09259, PRK09259, putative oxalyl-CoA decarboxylase; Validated.
Length = 569
Score = 24.2 bits (53), Expect = 8.7
Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 8/51 (15%)
Query: 68 TPKNRRDKLSDILG-----FGEMTSLKTALRELQQSLQSRKPNMVSAAMDP 113
R DK+ + G L+ AL E ++ S KP +++ +DP
Sbjct: 500 VHHARYDKMMEAFGGVGYNVTTPDELRHALTE---AIASGKPTLINVVIDP 547
>gnl|CDD|148430 pfam06818, Fez1, Fez1. This family represents the eukaryotic Fez1
protein. Fez1 contains a leucine-zipper region with
similarity to the DNA-binding domain of the
cAMP-responsive activating-transcription factor 5. There
is evidence that Fez1 inhibits cancer cell growth
through regulation of mitosis, and that its alterations
result in abnormal cell growth. Note that some family
members contain more than one copy of this region.
Length = 199
Score = 24.1 bits (52), Expect = 9.7
Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
Query: 83 GEMTSLKTALRELQQSLQSRKPNMVSAAMDPLKKCVGTR 121
GE+ SL+ LRE + L+ + + L+ + T+
Sbjct: 31 GEIVSLRAQLREARAQLRESE-----EQLQELQDALRTK 64
>gnl|CDD|150409 pfam09730, BicD, Microtubule-associated protein Bicaudal-D. BicD
proteins consist of three coiled-coiled domains and are
involved in dynein-mediated minus end-directed transport
from the Golgi apparatus to the endoplasmic reticulum
(ER). For full functioning they bind with GSK-3beta
pfam05350 to maintain the anchoring of microtubules to
the centromere. It appears that amino-acid residues
437-617 of BicD and the kinase activity of GSK-3 are
necessary for the formation of a complex between BicD
and GSK-3beta in intact cells.
Length = 711
Score = 24.0 bits (52), Expect = 10.0
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 84 EMTSLKTALRELQQSLQSRK 103
E SL L+ELQ L+ +
Sbjct: 274 EKASLLANLQELQTQLEQSE 293
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.318 0.134 0.372
Gapped
Lambda K H
0.267 0.0630 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,899,251
Number of extensions: 107847
Number of successful extensions: 218
Number of sequences better than 10.0: 1
Number of HSP's gapped: 218
Number of HSP's successfully gapped: 29
Length of query: 121
Length of database: 5,994,473
Length adjustment: 81
Effective length of query: 40
Effective length of database: 4,244,225
Effective search space: 169769000
Effective search space used: 169769000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.6 bits)