RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780641|ref|YP_003065054.1| hypothetical protein CLIBASIA_02640 [Candidatus Liberibacter asiaticus str. psy62] (121 letters) >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} (W:) Length = 461 Score = 27.6 bits (59), Expect = 0.55 Identities = 4/23 (17%), Positives = 9/23 (39%), Gaps = 2/23 (8%) Query: 75 KLSDIL--GFGEMTSLKTALREL 95 S+ + + K +LR + Sbjct: 438 YWSEEMEDRLQALEKDKPSLRVI 460 >1slq_A VP4; beta sandwich, greek KEY, alpha helical triple coiled-coil, membrane penetration protein, non-enveloped virus, spike protein; 3.20A {Rhesus rotavirus} (A:1-243) Length = 243 Score = 24.0 bits (52), Expect = 6.8 Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 8/33 (24%) Query: 11 DGQKYTIARQMHEKGEGSFTLIDDIPSGNDFKT 43 + Y +A G F+LI +PS +D++T Sbjct: 211 GKEYYEVA--------GRFSLISLVPSNDDYQT 235 >1z0j_B FYVE-finger-containing RAB5 effector protein rabenosyn-5, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, endosomal trafficking; HET: GTP; 1.32A {Homo sapiens} (B:) Length = 59 Score = 24.0 bits (52), Expect = 7.0 Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 9/51 (17%) Query: 54 PVVAQKE-LQSFIHITPKNRRDKLSDILGFGEMTSLKTALRELQQSLQSRK 103 ++ Q + ++++I + R E+ L LREL+ +L +K Sbjct: 13 LLLQQIDNIKAYIFDAKQCGR--------LDEVEVLTENLRELKHTLAKQK 55 >2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus} (A:62-188) Length = 127 Score = 23.9 bits (52), Expect = 8.4 Identities = 9/18 (50%), Positives = 11/18 (61%) Query: 24 KGEGSFTLIDDIPSGNDF 41 + FTL+ D PSGN F Sbjct: 90 QMASPFTLVIDDPSGNSF 107 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.318 0.134 0.372 Gapped Lambda K H 0.267 0.0662 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 853,338 Number of extensions: 33697 Number of successful extensions: 98 Number of sequences better than 10.0: 1 Number of HSP's gapped: 98 Number of HSP's successfully gapped: 6 Length of query: 121 Length of database: 4,956,049 Length adjustment: 72 Effective length of query: 49 Effective length of database: 2,522,089 Effective search space: 123582361 Effective search space used: 123582361 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 50 (23.2 bits)