RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780641|ref|YP_003065054.1| hypothetical protein
CLIBASIA_02640 [Candidatus Liberibacter asiaticus str. psy62]
         (121 letters)



>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme-
           inhibitor complex, structural genomics, protein
           structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo
           sapiens} (W:)
          Length = 461

 Score = 27.6 bits (59), Expect = 0.55
 Identities = 4/23 (17%), Positives = 9/23 (39%), Gaps = 2/23 (8%)

Query: 75  KLSDIL--GFGEMTSLKTALREL 95
             S+ +      +   K +LR +
Sbjct: 438 YWSEEMEDRLQALEKDKPSLRVI 460


>1slq_A VP4; beta sandwich, greek KEY, alpha helical triple
           coiled-coil, membrane penetration protein, non-enveloped
           virus, spike protein; 3.20A {Rhesus rotavirus} (A:1-243)
          Length = 243

 Score = 24.0 bits (52), Expect = 6.8
 Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 8/33 (24%)

Query: 11  DGQKYTIARQMHEKGEGSFTLIDDIPSGNDFKT 43
             + Y +A        G F+LI  +PS +D++T
Sbjct: 211 GKEYYEVA--------GRFSLISLVPSNDDYQT 235


>1z0j_B FYVE-finger-containing RAB5 effector protein rabenosyn-5,
           RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase,
           endosomal trafficking; HET: GTP; 1.32A {Homo sapiens}
           (B:)
          Length = 59

 Score = 24.0 bits (52), Expect = 7.0
 Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 9/51 (17%)

Query: 54  PVVAQKE-LQSFIHITPKNRRDKLSDILGFGEMTSLKTALRELQQSLQSRK 103
            ++ Q + ++++I    +  R          E+  L   LREL+ +L  +K
Sbjct: 13  LLLQQIDNIKAYIFDAKQCGR--------LDEVEVLTENLRELKHTLAKQK 55


>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix,
           anti-parrallel beta sheet, double straded anti-parallel
           beta helix, metal binding protein; 2.00A {Mus musculus}
           (A:62-188)
          Length = 127

 Score = 23.9 bits (52), Expect = 8.4
 Identities = 9/18 (50%), Positives = 11/18 (61%)

Query: 24  KGEGSFTLIDDIPSGNDF 41
           +    FTL+ D PSGN F
Sbjct: 90  QMASPFTLVIDDPSGNSF 107


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.318    0.134    0.372 

Gapped
Lambda     K      H
   0.267   0.0662    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 853,338
Number of extensions: 33697
Number of successful extensions: 98
Number of sequences better than 10.0: 1
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 6
Length of query: 121
Length of database: 4,956,049
Length adjustment: 72
Effective length of query: 49
Effective length of database: 2,522,089
Effective search space: 123582361
Effective search space used: 123582361
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.2 bits)