RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780642|ref|YP_003065055.1| hypothetical protein CLIBASIA_02645 [Candidatus Liberibacter asiaticus str. psy62] (66 letters) >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 33.4 bits (76), Expect = 0.013 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 22/73 (30%) Query: 1 MVLDNQKSAKALHERWSQGKFNYDQDRIDIIRIASSLLEIQINTKMELTELEKSLSIVLH 60 M +D K++KA + W++ N+ +D S+L+I IN + LT +H Sbjct: 1631 MGMDLYKTSKAAQDVWNRAD-NHFKDTYGF-----SILDIVINNPVNLT---------IH 1675 Query: 61 ---EK----KENF 66 EK +EN+ Sbjct: 1676 FGGEKGKRIRENY 1688 Score = 27.6 bits (61), Expect = 0.70 Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 20/70 (28%) Query: 5 NQKSAKALHER------WSQGKFNY-----------DQDRIDIIRIASSLLEIQINTKME 47 +Q++ + + ER W NY D +D + + +++Q K++ Sbjct: 1822 SQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQ---KID 1878 Query: 48 LTELEKSLSI 57 + EL+KSLS+ Sbjct: 1879 IIELQKSLSL 1888 >3m0m_A L-rhamnose isomerase; beta/alpha barrel, HOMO-tetramer, metal-binding protein, TIM isomerase; HET: AOS; 1.45A {Pseudomonas stutzeri} PDB: 3m0l_A* 3m0h_A* 3m0v_A* 3m0x_A* 3m0y_A* 3itx_A 2hcv_A* 2i57_A* 2i56_A 3ity_A 3iud_A 3iuh_A 3iui_A 3itv_A* 3itt_A* 3itl_A* 3ito_A* Length = 438 Score = 24.7 bits (53), Expect = 4.8 Identities = 8/41 (19%), Positives = 18/41 (43%) Query: 4 DNQKSAKALHERWSQGKFNYDQDRIDIIRIASSLLEIQINT 44 +N + A AL E + N + +DI + + + + + Sbjct: 14 ENDRRASALKEDYEALGANLARRGVDIEAVTAKVEKFFVAV 54 >3itv_A L-rhamnose isomerase; beta/alpha barrel, HOMO-tetramer, metal-binding protein, TIM barrel; HET: PSJ; 1.60A {Pseudomonas stutzeri} PDB: 3itt_A* 3itx_A 2hcv_A* 2i57_A* 2i56_A 3ity_A 3iud_A 3iuh_A 3iui_A 3itl_A* 3ito_A* Length = 438 Score = 24.5 bits (53), Expect = 6.0 Identities = 8/39 (20%), Positives = 18/39 (46%) Query: 4 DNQKSAKALHERWSQGKFNYDQDRIDIIRIASSLLEIQI 42 +N + A AL E + N + +DI + + + + + Sbjct: 14 ENDRRASALKEDYEALGANLARRGVDIEAVTAKVEKFFV 52 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.315 0.130 0.347 Gapped Lambda K H 0.267 0.0646 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 500,800 Number of extensions: 17058 Number of successful extensions: 40 Number of sequences better than 10.0: 1 Number of HSP's gapped: 38 Number of HSP's successfully gapped: 5 Length of query: 66 Length of database: 5,693,230 Length adjustment: 37 Effective length of query: 29 Effective length of database: 4,796,202 Effective search space: 139089858 Effective search space used: 139089858 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 50 (23.2 bits)