RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780642|ref|YP_003065055.1| hypothetical protein
CLIBASIA_02645 [Candidatus Liberibacter asiaticus str. psy62]
         (66 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl reductase,
            beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
            cerevisiae}
          Length = 2006

 Score = 33.4 bits (76), Expect = 0.013
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 22/73 (30%)

Query: 1    MVLDNQKSAKALHERWSQGKFNYDQDRIDIIRIASSLLEIQINTKMELTELEKSLSIVLH 60
            M +D  K++KA  + W++   N+ +D         S+L+I IN  + LT         +H
Sbjct: 1631 MGMDLYKTSKAAQDVWNRAD-NHFKDTYGF-----SILDIVINNPVNLT---------IH 1675

Query: 61   ---EK----KENF 66
               EK    +EN+
Sbjct: 1676 FGGEKGKRIRENY 1688



 Score = 27.6 bits (61), Expect = 0.70
 Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 20/70 (28%)

Query: 5    NQKSAKALHER------WSQGKFNY-----------DQDRIDIIRIASSLLEIQINTKME 47
            +Q++ + + ER      W     NY           D   +D +    + +++Q   K++
Sbjct: 1822 SQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQ---KID 1878

Query: 48   LTELEKSLSI 57
            + EL+KSLS+
Sbjct: 1879 IIELQKSLSL 1888


>3m0m_A L-rhamnose isomerase; beta/alpha barrel, HOMO-tetramer,
          metal-binding protein, TIM isomerase; HET: AOS; 1.45A
          {Pseudomonas stutzeri} PDB: 3m0l_A* 3m0h_A* 3m0v_A*
          3m0x_A* 3m0y_A* 3itx_A 2hcv_A* 2i57_A* 2i56_A 3ity_A
          3iud_A 3iuh_A 3iui_A 3itv_A* 3itt_A* 3itl_A* 3ito_A*
          Length = 438

 Score = 24.7 bits (53), Expect = 4.8
 Identities = 8/41 (19%), Positives = 18/41 (43%)

Query: 4  DNQKSAKALHERWSQGKFNYDQDRIDIIRIASSLLEIQINT 44
          +N + A AL E +     N  +  +DI  + + + +  +  
Sbjct: 14 ENDRRASALKEDYEALGANLARRGVDIEAVTAKVEKFFVAV 54


>3itv_A L-rhamnose isomerase; beta/alpha barrel, HOMO-tetramer,
          metal-binding protein, TIM barrel; HET: PSJ; 1.60A
          {Pseudomonas stutzeri} PDB: 3itt_A* 3itx_A 2hcv_A*
          2i57_A* 2i56_A 3ity_A 3iud_A 3iuh_A 3iui_A 3itl_A*
          3ito_A*
          Length = 438

 Score = 24.5 bits (53), Expect = 6.0
 Identities = 8/39 (20%), Positives = 18/39 (46%)

Query: 4  DNQKSAKALHERWSQGKFNYDQDRIDIIRIASSLLEIQI 42
          +N + A AL E +     N  +  +DI  + + + +  +
Sbjct: 14 ENDRRASALKEDYEALGANLARRGVDIEAVTAKVEKFFV 52


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.315    0.130    0.347 

Gapped
Lambda     K      H
   0.267   0.0646    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 500,800
Number of extensions: 17058
Number of successful extensions: 40
Number of sequences better than 10.0: 1
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 5
Length of query: 66
Length of database: 5,693,230
Length adjustment: 37
Effective length of query: 29
Effective length of database: 4,796,202
Effective search space: 139089858
Effective search space used: 139089858
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.2 bits)