BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780642|ref|YP_003065055.1| hypothetical protein
CLIBASIA_02645 [Candidatus Liberibacter asiaticus str. psy62]
         (66 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780642|ref|YP_003065055.1| hypothetical protein CLIBASIA_02645 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 66

 Score =  133 bits (335), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 66/66 (100%), Positives = 66/66 (100%)

Query: 1  MVLDNQKSAKALHERWSQGKFNYDQDRIDIIRIASSLLEIQINTKMELTELEKSLSIVLH 60
          MVLDNQKSAKALHERWSQGKFNYDQDRIDIIRIASSLLEIQINTKMELTELEKSLSIVLH
Sbjct: 1  MVLDNQKSAKALHERWSQGKFNYDQDRIDIIRIASSLLEIQINTKMELTELEKSLSIVLH 60

Query: 61 EKKENF 66
          EKKENF
Sbjct: 61 EKKENF 66


>gi|254780877|ref|YP_003065290.1| ATP-dependent Clp protease, ATP-binding subunit protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 853

 Score = 25.8 bits (55), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 3/58 (5%)

Query: 8   SAKALHERWSQGKFNYDQDRIDIIRIASSLLEIQINTKME-LTELEKSLSIVLHEKKE 64
           SA  L  R+   +F  D+  ID++  AS+ + +QI+TK E L EL++ + I L  +KE
Sbjct: 372 SAAVLSNRYITDRFLPDK-AIDLMDEASARVRMQIDTKPEVLDELDRRI-ICLKIEKE 427


>gi|254781206|ref|YP_003065619.1| hypothetical protein CLIBASIA_05565 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 1246

 Score = 22.3 bits (46), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 11/24 (45%), Positives = 14/24 (58%)

Query: 22 NYDQDRIDIIRIASSLLEIQINTK 45
          N DQD+I    +A +L  IQ N K
Sbjct: 14 NLDQDKIPSEDVAKTLTSIQDNIK 37


>gi|254780625|ref|YP_003065038.1| formamidopyrimidine-DNA glycosylase [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 289

 Score = 21.9 bits (45), Expect = 1.9,   Method: Composition-based stats.
 Identities = 9/24 (37%), Positives = 16/24 (66%)

Query: 37 LLEIQINTKMELTELEKSLSIVLH 60
          ++++    K  L ELE +LSI++H
Sbjct: 50 IIDVSRRAKYLLIELEGNLSIIVH 73


>gi|254780256|ref|YP_003064669.1| 50S ribosomal protein L22 [Candidatus Liberibacter asiaticus str.
          psy62]
          Length = 131

 Score = 21.2 bits (43), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 16/62 (25%), Positives = 29/62 (46%)

Query: 4  DNQKSAKALHERWSQGKFNYDQDRIDIIRIASSLLEIQINTKMELTELEKSLSIVLHEKK 63
          DN+ +A A   R S  K N     I   R++ +L +++ + K    E+ K+L   +   +
Sbjct: 14 DNEANAIASMLRVSPQKLNLVAAMIRGKRVSDALADLEFSRKRIAGEVRKTLCSAVANAE 73

Query: 64 EN 65
           N
Sbjct: 74 NN 75


>gi|254780281|ref|YP_003064694.1| cytochrome-c oxidase assembly factor protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 201

 Score = 20.0 bits (40), Expect = 8.2,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 16/34 (47%)

Query: 4   DNQKSAKALHERWSQGKFNYDQDRIDIIRIASSL 37
           D  +  K   +R+S        D ID++R+A + 
Sbjct: 105 DTPEVMKKFVQRFSDRIIGISGDPIDVMRVAKNF 138


>gi|254781138|ref|YP_003065551.1| hypothetical protein CLIBASIA_05200 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 178

 Score = 19.6 bits (39), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 8/24 (33%), Positives = 16/24 (66%)

Query: 38 LEIQINTKMELTELEKSLSIVLHE 61
          +E++IN  + L E+E+ + + L E
Sbjct: 32 IEVKINRALRLREMERKIVLSLVE 55


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.315    0.130    0.347 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,952
Number of Sequences: 1233
Number of extensions: 1168
Number of successful extensions: 7
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 66
length of database: 328,796
effective HSP length: 37
effective length of query: 29
effective length of database: 283,175
effective search space:  8212075
effective search space used:  8212075
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.1 bits)
S2: 31 (16.5 bits)