Query gi|254780644|ref|YP_003065057.1| hypothetical protein CLIBASIA_02655 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 289
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Wed Jun 1 09:31:59 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780644.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1j7qa_ a.39.1.5 (A:) Calcium 40.8 7.5 0.00055 16.3 2.3 32 49-84 12-43 (86)
2 d1cg5b_ a.1.1.2 (B:) Hemoglobi 33.6 12 0.00089 14.8 4.2 52 100-151 79-133 (141)
3 d1scya_ g.3.7.2 (A:) Scyllatox 29.9 3 0.00022 19.0 -1.2 22 240-261 1-22 (31)
4 d1h97a_ a.1.1.2 (A:) Trematode 28.9 12 0.00085 15.0 1.7 51 98-148 87-137 (147)
5 d1outa_ a.1.1.2 (A:) Hemoglobi 22.5 19 0.0014 13.5 4.8 52 100-151 79-134 (142)
6 d1q1ha_ a.4.5.41 (A:) Transcri 21.0 19 0.0014 13.5 1.5 52 123-174 4-55 (88)
7 d2g38a1 a.25.4.1 (A:8-84) PE25 20.7 20 0.0015 13.3 1.6 28 105-132 48-75 (77)
8 d1hlba_ a.1.1.2 (A:) Hemoglobi 19.3 19 0.0014 13.5 1.2 62 98-163 93-157 (157)
9 d1x9fb_ a.1.1.2 (B:) Extracell 18.8 23 0.0016 13.0 3.4 71 72-150 67-137 (145)
10 d1wgya_ d.15.1.5 (A:) Rap guan 16.9 24 0.0018 12.8 1.3 19 196-214 86-104 (104)
No 1
>d1j7qa_ a.39.1.5 (A:) Calcium vector protein {Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]}
Probab=40.82 E-value=7.5 Score=16.25 Aligned_cols=32 Identities=38% Similarity=0.644 Sum_probs=22.7
Q ss_pred CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 403799998665320024511356577999999746
Q gi|254780644|r 49 ENTLCQKFFNAFDRHATAGIEIKKTMNATLQFLQKV 84 (289)
Q Consensus 49 entlcqkffnafdrhatagieikktmnatlqflqkv 84 (289)
|..-|-|.|..|||.|..-..+..||. .|.|.
T Consensus 12 ekdecmkifdifdrnaeniapvsdtmd----mltkl 43 (86)
T d1j7qa_ 12 EKDECMKIFDIFDRNAENIAPVSDTMD----MLTKL 43 (86)
T ss_dssp HHHHHHHHHHHHSTTTTSCBCHHHHHH----HHHHT
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCHHHH----HHHHH
T ss_conf 577899999997035211577102899----99996
No 2
>d1cg5b_ a.1.1.2 (B:) Hemoglobin, beta-chain {Cartilaginous fish akaei (Dasyatis akajei) [TaxId: 31902]}
Probab=33.63 E-value=12 Score=14.82 Aligned_cols=52 Identities=17% Similarity=0.323 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHH---HHHHHC
Q ss_conf 7765321224565421123222307887666554303420669999---999852
Q gi|254780644|r 100 TVIANLTDSHQKYATNIATYMPIGEEFAHSLSARIASSENAQVIEA---LYDIVK 151 (289)
Q Consensus 100 tvianltdshqkyatniatympigeefahslsariassenaqviea---lydivk 151 (289)
.....|...|.++.....-|..+|+-+-..|.......=++.+.+| +|++|-
T Consensus 79 ~~l~~Lg~~H~~~~v~p~~F~~~g~~ll~~l~~~lg~~ft~e~~~AW~k~~~~va 133 (141)
T d1cg5b_ 79 INFQNLSGKHQEIGVDTQNFKLLGQTFMVELALHYKKTFRPKEHAAAYKFFRLVA 133 (141)
T ss_dssp HHTHHHHHHHHHHTCCTHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 2999999999981999579999999999999988583189999999999999999
No 3
>d1scya_ g.3.7.2 (A:) Scyllatoxin {Scorpion (Leiurus quinquestriatus hebraeus) [TaxId: 6884]}
Probab=29.90 E-value=3 Score=18.99 Aligned_cols=22 Identities=45% Similarity=0.856 Sum_probs=18.0
Q ss_pred CCCCHHHCEEEEEEEEECCCCH
Q ss_conf 7667323031012320001300
Q gi|254780644|r 240 APANLSECQLNCLGLAVWGSCA 261 (289)
Q Consensus 240 apanlsecqlnclglavwgsca 261 (289)
|-.||..|||.|-.|...|.|.
T Consensus 1 a~cnlrrc~lscrslgllgkci 22 (31)
T d1scya_ 1 AFCNLRMCQLSCRSLGLLGKCI 22 (31)
T ss_dssp CCCCHHHHHHHHHHTTCEEEEC
T ss_pred CCCCCHHHHHHHHHHHHHHHHH
T ss_conf 9353032311014543356551
No 4
>d1h97a_ a.1.1.2 (A:) Trematode hemoglobin/myoglobin {Paramphistomum epiclitum [TaxId: 54403]}
Probab=28.86 E-value=12 Score=14.95 Aligned_cols=51 Identities=12% Similarity=0.199 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 667765321224565421123222307887666554303420669999999
Q gi|254780644|r 98 YSTVIANLTDSHQKYATNIATYMPIGEEFAHSLSARIASSENAQVIEALYD 148 (289)
Q Consensus 98 ystvianltdshqkyatniatympigeefahslsariassenaqviealyd 148 (289)
....+..|...|.++.....-|-.+++-|--.++.....+.+...-+++++
T Consensus 87 l~~~l~~lg~~H~~~gV~~~~f~~~~~~li~~l~~~lg~~~~~~a~~~~~~ 137 (147)
T d1h97a_ 87 VKKIAAQYGKDHTSRKVTKDEFMSGEPIFTKYFQNLVKDAEGKAAVEKFLK 137 (147)
T ss_dssp HHHHHHHHHHTTTTSSCCHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 999999999988756999999999999999999988283157999999999
No 5
>d1outa_ a.1.1.2 (A:) Hemoglobin, alpha-chain {Trout (Oncorhynchus mykiss) [TaxId: 8022]}
Probab=22.48 E-value=19 Score=13.52 Aligned_cols=52 Identities=17% Similarity=0.218 Sum_probs=38.0
Q ss_pred HHHHHHHHHHH-HHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHH---HHHHHC
Q ss_conf 77653212245-65421123222307887666554303420669999---999852
Q gi|254780644|r 100 TVIANLTDSHQ-KYATNIATYMPIGEEFAHSLSARIASSENAQVIEA---LYDIVK 151 (289)
Q Consensus 100 tvianltdshq-kyatniatympigeefahslsariassenaqviea---lydivk 151 (289)
.++..|...|+ +|.....-|..+|+-+-..+.....+.=++++.+| +|++|-
T Consensus 79 ~~l~~L~~~H~~~~~V~~~~f~~~~~~ll~~l~~~lg~~~t~e~~~AW~k~~~~v~ 134 (142)
T d1outa_ 79 GGMSALSDLHAFKLRVDPGNFKILSHNILVTLAIHFPSDFTPEVHIAVDKFLAAVS 134 (142)
T ss_dssp HHTHHHHHHHHHTTCCCTHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 99999999988721897788999999999999987413189999999999999999
No 6
>d1q1ha_ a.4.5.41 (A:) Transcription factor E/IIe-alpha, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=21.01 E-value=19 Score=13.50 Aligned_cols=52 Identities=13% Similarity=0.183 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHH
Q ss_conf 0788766655430342066999999985287827887100528899999878
Q gi|254780644|r 123 GEEFAHSLSARIASSENAQVIEALYDIVKNRNDIMLLTKYGESLQILRRLTQ 174 (289)
Q Consensus 123 geefahslsariassenaqviealydivknrndimlltkygeslqilrrltq 174 (289)
.|+.-+.+...++..+-..|+++|++..++..|--+-.+-|-.+...||.-.
T Consensus 4 ae~ll~~~~~~i~Ge~~~~v~~~L~~~~~evtDe~iA~~tgi~in~VRk~Ly 55 (88)
T d1q1ha_ 4 AEDLFINLAKSLLGDDVIDVLRILLDKGTEMTDEEIANQLNIKVNDVRKKLN 55 (88)
T ss_dssp TTTHHHHHHHTTSCSTTHHHHHHHHHHCSCBCHHHHHHTTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 6899999999970378999999988636767899999996996999999999
No 7
>d2g38a1 a.25.4.1 (A:8-84) PE25 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=20.70 E-value=20 Score=13.31 Aligned_cols=28 Identities=39% Similarity=0.562 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 2122456542112322230788766655
Q gi|254780644|r 105 LTDSHQKYATNIATYMPIGEEFAHSLSA 132 (289)
Q Consensus 105 ltdshqkyatniatympigeefahslsa 132 (289)
|..-..||...|+.-.-+-|||+|.|..
T Consensus 48 lveyarkyrqtiaaaavvleefahaltt 75 (77)
T d2g38a1 48 LVEYARKYRQTIAAAAVVLEEFAHALTT 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999999999999999999988712
No 8
>d1hlba_ a.1.1.2 (A:) Hemoglobin, different isoforms {Caudina arenicola, also known as Molpadia arenicola [TaxId: 7698]}
Probab=19.32 E-value=19 Score=13.49 Aligned_cols=62 Identities=19% Similarity=0.330 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CCHHHHHHHHHHHCCCCCEEEECCCC
Q ss_conf 6677653212245654211232223078876665543034---20669999999852878278871005
Q gi|254780644|r 98 YSTVIANLTDSHQKYATNIATYMPIGEEFAHSLSARIASS---ENAQVIEALYDIVKNRNDIMLLTKYG 163 (289)
Q Consensus 98 ystvianltdshqkyatniatympigeefahslsariass---enaqviealydivknrndimlltkyg 163 (289)
....+..|...|.+|.....-|-.+|+-+-..+....... |..+--..+|+.+-+. +..|||
T Consensus 93 l~~~l~~lg~~H~~~gv~~~~f~~~~~~ll~~l~~~lg~~~t~~~~~AW~~~~~~i~~~----m~~k~g 157 (157)
T d1hlba_ 93 LPELLATLARTHDLNKVGADHYNLFAKVLMEALQAELGSDFNEKTRDAWAKAFSVVQAV----LLVKHG 157 (157)
T ss_dssp HHHHTHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHHHHT----CSCCCC
T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH----HHHHHC
T ss_conf 99999999661423688999999999999999998827679999999999999999999----998629
No 9
>d1x9fb_ a.1.1.2 (B:) Extracellular dodecameric hemoglobin (erythrocruorin), subunit II (globin B) {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}
Probab=18.80 E-value=23 Score=13.01 Aligned_cols=71 Identities=10% Similarity=0.164 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 6577999999746889833101125666776532122456542112322230788766655430342066999999985
Q gi|254780644|r 72 KTMNATLQFLQKVPTADPQAVEYEKPYSTVIANLTDSHQKYATNIATYMPIGEEFAHSLSARIASSENAQVIEALYDIV 150 (289)
Q Consensus 72 ktmnatlqflqkvptadpqaveyekpystvianltdshqkyatniatympigeefahslsariassenaqviealydiv 150 (289)
+.|++--.+.+... ||.. ....+..|...|.+|.....-|..+|+-+...+.....+..+..--..+|+.+
T Consensus 67 ~v~~~l~~~I~~Ld--d~~~------l~~~L~~lg~~H~~~gv~~~~f~~~~~~l~~~l~~~lg~~~~~~AW~~~~~~i 137 (145)
T d1x9fb_ 67 RVLGGLDIAISTLD--QPAT------LKEELDHLQVQHEGRKIPDNYFDAFKTAILHVVAAQLGRCYDREAWDACIDHI 137 (145)
T ss_dssp HHHHHHHHHHHTTT--CHHH------HHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCC--CHHH------HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 99999999998234--4888------99999998622313678899999999999999998818758899999999999
No 10
>d1wgya_ d.15.1.5 (A:) Rap guanine nucleotide exchange factor 5, RapGEF5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.95 E-value=24 Score=12.79 Aligned_cols=19 Identities=47% Similarity=0.732 Sum_probs=13.1
Q ss_pred HHHHHHCCCCCCCCCCCCC
Q ss_conf 8787511779988888777
Q gi|254780644|r 196 KHWYDTLIPHPDDSSPNSG 214 (289)
Q Consensus 196 khwydtliphpddsspnsg 214 (289)
|.-.|+|.|.|+...|..|
T Consensus 86 ~d~~d~L~PlpEq~gP~~G 104 (104)
T d1wgya_ 86 KDLADTLNPFAENSGPSSG 104 (104)
T ss_dssp CCSSSCCCCCCCCCCCCCC
T ss_pred HHHCCCCCCCCCCCCCCCC
T ss_conf 5654635788310288898
Done!