RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780644|ref|YP_003065057.1| hypothetical protein
CLIBASIA_02655 [Candidatus Liberibacter asiaticus str. psy62]
         (289 letters)



>d1scya_ g.3.7.2 (A:) Scyllatoxin {Scorpion (Leiurus quinquestriatus
           hebraeus) [TaxId: 6884]}
          Length = 31

 Score = 26.4 bits (58), Expect = 2.6
 Identities = 10/21 (47%), Positives = 12/21 (57%)

Query: 240 APANLSECQLNCLGLAVWGSC 260
           A  NL  CQL+C  L + G C
Sbjct: 1   AFCNLRMCQLSCRSLGLLGKC 21


>d1vdha_ d.58.4.10 (A:) Polyketide synthase CurD homologue
           TTHA1714/TTC1352 {Thermus thermophilus [TaxId: 274]}
          Length = 247

 Score = 26.7 bits (59), Expect = 2.6
 Identities = 10/52 (19%), Positives = 17/52 (32%), Gaps = 1/52 (1%)

Query: 124 EEFAHSLSARIASSENAQVIEALYDIVKNRNDIMLLTKYGESLQILRRLTQE 175
           EE    +       E  Q    +Y +V ++ D++ L      L  L      
Sbjct: 40  EELKGLVREWRELEEAGQGSYGIYQVVGHKADLLFLN-LRPGLDPLLEAEAR 90


>d1q1ha_ a.4.5.41 (A:) Transcription factor E/IIe-alpha, N-terminal
           domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
          Length = 88

 Score = 26.3 bits (58), Expect = 3.0
 Identities = 8/52 (15%), Positives = 19/52 (36%)

Query: 120 MPIGEEFAHSLSARIASSENAQVIEALYDIVKNRNDIMLLTKYGESLQILRR 171
           M   E+   +L+  +   +   V+  L D      D  +  +    +  +R+
Sbjct: 1   MVNAEDLFINLAKSLLGDDVIDVLRILLDKGTEMTDEEIANQLNIKVNDVRK 52


>d1vkja_ c.37.1.5 (A:) Heparan sulfate 3-O-sulfotransferase {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 258

 Score = 26.1 bits (56), Expect = 3.6
 Identities = 8/52 (15%), Positives = 14/52 (26%)

Query: 7   KLKEACDVATDSIRSFFMQAKPYILPALSKEEQKSLKYFFLPENTLCQKFFN 58
           K K    +          ++K    P +  +    L  +F   N    K   
Sbjct: 201 KTKGFYCLRDSGKDRCLHESKGRAHPQVDPKLLDKLHEYFHEPNKKFFKLVG 252


>d1zpya1 a.25.1.5 (A:4-94) Hypothetical protein NE0167 {Nitrosomonas
           europaea [TaxId: 915]}
          Length = 91

 Score = 24.7 bits (54), Expect = 8.4
 Identities = 7/49 (14%), Positives = 19/49 (38%), Gaps = 5/49 (10%)

Query: 132 ARIASSENAQVIEALYDIVKNRNDIMLLTKYGESLQILRRLTQETEKHI 180
            R+ + ++ ++   L      R++          L+ +RR     +K +
Sbjct: 36  QRVNACKDKELKAILAHN---RDEEK--EHAAMLLEWIRRCDPAFDKEL 79


>d1usya_ d.104.1.1 (A:) ATP phosphoribosyltransferase regulatory
          subunit HisZ {Thermotoga maritima [TaxId: 2336]}
          Length = 275

 Score = 24.7 bits (53), Expect = 8.6
 Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 5/35 (14%)

Query: 17 DSIRSFFMQAK-----PYILPALSKEEQKSLKYFF 46
          + + SF+ +A      P+ +PAL K E+ +  +F 
Sbjct: 7  EKVFSFYSKATKKGFSPFFVPALEKAEEPAGNFFL 41


>d1j7qa_ a.39.1.5 (A:) Calcium vector protein {Amphioxus
          (Branchiostoma lanceolatum) [TaxId: 7740]}
          Length = 86

 Score = 24.8 bits (53), Expect = 8.8
 Identities = 13/47 (27%), Positives = 21/47 (44%)

Query: 49 ENTLCQKFFNAFDRHATAGIEIKKTMNATLQFLQKVPTADPQAVEYE 95
          E   C K F+ FDR+A     +  TM+   +  Q     + +A+  E
Sbjct: 12 EKDECMKIFDIFDRNAENIAPVSDTMDMLTKLGQTYTKRETEAIMKE 58


>d3sdha_ a.1.1.2 (A:) Hemoglobin I {Ark clam (Scapharca
           inaequivalvis) [TaxId: 6561]}
          Length = 145

 Score = 24.6 bits (53), Expect = 9.1
 Identities = 8/52 (15%), Positives = 17/52 (32%)

Query: 99  STVIANLTDSHQKYATNIATYMPIGEEFAHSLSARIASSENAQVIEALYDIV 150
             V+     +H     + A +  I       L+++    + A     L  +V
Sbjct: 90  VCVVEKFAVNHITRKISAAEFGKINGPIKKVLASKNFGDKYANAWAKLVAVV 141


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.131    0.383 

Gapped
Lambda     K      H
   0.267   0.0533    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,018,229
Number of extensions: 43325
Number of successful extensions: 149
Number of sequences better than 10.0: 1
Number of HSP's gapped: 149
Number of HSP's successfully gapped: 19
Length of query: 289
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 205
Effective length of database: 1,254,276
Effective search space: 257126580
Effective search space used: 257126580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.3 bits)