BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780644|ref|YP_003065057.1| hypothetical protein
CLIBASIA_02655 [Candidatus Liberibacter asiaticus str. psy62]
         (289 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780644|ref|YP_003065057.1| hypothetical protein CLIBASIA_02655 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 289

 Score =  605 bits (1560), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 289/289 (100%), Positives = 289/289 (100%)

Query: 1   MIRKNEKLKEACDVATDSIRSFFMQAKPYILPALSKEEQKSLKYFFLPENTLCQKFFNAF 60
           MIRKNEKLKEACDVATDSIRSFFMQAKPYILPALSKEEQKSLKYFFLPENTLCQKFFNAF
Sbjct: 1   MIRKNEKLKEACDVATDSIRSFFMQAKPYILPALSKEEQKSLKYFFLPENTLCQKFFNAF 60

Query: 61  DRHATAGIEIKKTMNATLQFLQKVPTADPQAVEYEKPYSTVIANLTDSHQKYATNIATYM 120
           DRHATAGIEIKKTMNATLQFLQKVPTADPQAVEYEKPYSTVIANLTDSHQKYATNIATYM
Sbjct: 61  DRHATAGIEIKKTMNATLQFLQKVPTADPQAVEYEKPYSTVIANLTDSHQKYATNIATYM 120

Query: 121 PIGEEFAHSLSARIASSENAQVIEALYDIVKNRNDIMLLTKYGESLQILRRLTQETEKHI 180
           PIGEEFAHSLSARIASSENAQVIEALYDIVKNRNDIMLLTKYGESLQILRRLTQETEKHI
Sbjct: 121 PIGEEFAHSLSARIASSENAQVIEALYDIVKNRNDIMLLTKYGESLQILRRLTQETEKHI 180

Query: 181 NNLQDKILQDRAKEIKHWYDTLIPHPDDSSPNSGVSFDIMEPGHEKTNIYALSYGEQMSA 240
           NNLQDKILQDRAKEIKHWYDTLIPHPDDSSPNSGVSFDIMEPGHEKTNIYALSYGEQMSA
Sbjct: 181 NNLQDKILQDRAKEIKHWYDTLIPHPDDSSPNSGVSFDIMEPGHEKTNIYALSYGEQMSA 240

Query: 241 PANLSECQLNCLGLAVWGSCAPLLNNHHLALSFSIIQFNRWMITTLKVL 289
           PANLSECQLNCLGLAVWGSCAPLLNNHHLALSFSIIQFNRWMITTLKVL
Sbjct: 241 PANLSECQLNCLGLAVWGSCAPLLNNHHLALSFSIIQFNRWMITTLKVL 289


>gi|254780300|ref|YP_003064713.1| aspartate carbamoyltransferase catalytic subunit [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 316

 Score = 25.4 bits (54), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 153 RNDIMLLTKYGESLQILRRLTQETEKHINNLQDKILQDRAKEIK 196
           R+DIMLL   G  ++++  +T    K I+N+  ++  D  K +K
Sbjct: 174 RSDIMLLNTMGARIRVIAPITL-LPKDISNMGVEVFHDMQKGLK 216


>gi|254780424|ref|YP_003064837.1| transcriptional regulator protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 144

 Score = 25.4 bits (54), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 10/41 (24%), Positives = 17/41 (41%)

Query: 21  SFFMQAKPYILPALSKEEQKSLKYFFLPENTLCQKFFNAFD 61
           SFF    P +   +S EE   + +   P+     ++F   D
Sbjct: 71  SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111


>gi|254781114|ref|YP_003065527.1| glycosyl transferase family protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 263

 Score = 23.5 bits (49), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 9/33 (27%), Positives = 19/33 (57%)

Query: 172 LTQETEKHINNLQDKILQDRAKEIKHWYDTLIP 204
           + +E   H+ N++  I +    ++KHW++  IP
Sbjct: 157 IGKEAAIHLLNVRKNIYRPIDMDMKHWWEHNIP 189


>gi|254780327|ref|YP_003064740.1| preprotein translocase subunit SecA [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 890

 Score = 23.1 bits (48), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 8/17 (47%), Positives = 13/17 (76%)

Query: 95  EKPYSTVIANLTDSHQK 111
           E+ Y+ +IA + DSH+K
Sbjct: 422 EEKYAAIIAEIIDSHKK 438


>gi|254780918|ref|YP_003065331.1| glycosyl transferase family protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 623

 Score = 23.1 bits (48), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 10/31 (32%), Positives = 14/31 (45%)

Query: 102 IANLTDSHQKYATNIATYMPIGEEFAHSLSA 132
           IA   + H K   ++  Y      F HS+SA
Sbjct: 471 IAGHKNKHHKARCSVPNYQAFAMHFTHSISA 501


>gi|254780879|ref|YP_003065292.1| hypothetical protein CLIBASIA_03880 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 652

 Score = 22.7 bits (47), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 13/36 (36%), Positives = 20/36 (55%)

Query: 107 DSHQKYATNIATYMPIGEEFAHSLSARIASSENAQV 142
           D HQK A          EE A +LSA+++S + A++
Sbjct: 66  DGHQKIAIPAKLSHQTSEENAINLSAKLSSMQRARL 101


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.318    0.131    0.383 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 176,294
Number of Sequences: 1233
Number of extensions: 6818
Number of successful extensions: 30
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 20
Number of HSP's gapped (non-prelim): 17
length of query: 289
length of database: 328,796
effective HSP length: 73
effective length of query: 216
effective length of database: 238,787
effective search space: 51577992
effective search space used: 51577992
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 38 (19.2 bits)