Query         gi|254780645|ref|YP_003065058.1| hypothetical protein CLIBASIA_02660 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 91
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 33803
Date          Wed Jun  1 14:55:23 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780645.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >2wpv_A GET4, UPF0363 protein   41.2      22 0.00065   18.0   2.7   48   18-65      8-55  (130)
  2 >3e9m_A Oxidoreductase, GFO/ID  33.3      39  0.0011   16.6   2.9   40   23-62    130-175 (181)
  3 >2crb_A Nuclear receptor bindi  25.6      34   0.001   16.9   1.6   24    9-33     49-72  (97)
  4 >1irq_A Omega transcriptional   24.1      63  0.0019   15.4   3.0   36   20-58     29-67  (71)
  5 >2b3y_A Iron-responsive elemen  18.1      58  0.0017   15.6   1.5   19   42-60      5-23  (58)
  6 >1u7l_A Vacuolar ATP synthase   16.6      71  0.0021   15.0   1.6   10   46-55    171-180 (183)
  7 >1ny7_2 Cowpea mosaic virus, l  15.5      92  0.0027   14.4   2.0   25   63-88     66-90  (183)
  8 >1pgl_2 Bean POD mottle virus   14.7      91  0.0027   14.4   1.8   25   63-88     66-90  (182)
  9 >3gzu_A Inner capsid protein V  13.8      69  0.0021   15.1   1.0   26   43-68     91-116 (161)
 10 >2o9c_A Bacteriophytochrome; p  12.3      70  0.0021   15.1   0.6   11   59-69     40-50  (246)

No 1  
>>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding, GET5, GET4; 1.99A {Saccharomyces cerevisiae} (A:1-130)
Probab=41.25  E-value=22  Score=17.97  Aligned_cols=48  Identities=23%  Similarity=0.398  Sum_probs=37.9

Q ss_pred             HHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             653072566899999830041101345678899999986300003016
Q gi|254780645|r   18 KENLGLQKDLNHIRQIINEGDFKSAAVKMRILVESFLRKLSEKESISI   65 (91)
Q Consensus        18 kenlglqkdlnhirqiinegdfksaavkmrilvesflrklsekesisi   65 (91)
                      ..+-|+++-+..++.-|+||+|-.|.-..|.+.--+++.-.-.|.+.|
T Consensus         8 ~~~~~v~r~l~kl~~~I~~G~yYEAhQ~~rtl~~Ry~~~kky~eAi~l   55 (130)
T 2wpv_A            8 AVQAKLAKTLQRFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIEL   55 (130)
T ss_dssp             ----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf             322889999999998764658089999999999998711069999999


No 2  
>>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} (A:1-127,A:277-330)
Probab=33.25  E-value=39  Score=16.56  Aligned_cols=40  Identities=23%  Similarity=0.424  Sum_probs=29.0

Q ss_pred             CHHHHHHHHHHHCCCCCCHHHHHH------HHHHHHHHHHHHHHCC
Q ss_conf             256689999983004110134567------8899999986300003
Q gi|254780645|r   23 LQKDLNHIRQIINEGDFKSAAVKM------RILVESFLRKLSEKES   62 (91)
Q Consensus        23 lqkdlnhirqiinegdfksaavkm------rilvesflrklsekes   62 (91)
                      ..+..+|+.|.||+|..+|.-..-      --+||++.|..-.||.
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (181)
T 3e9m_A          130 FTYEINHVNQCLQDKKLTSPVXTKELTIATVKIVESFYQEWFDNEG  175 (181)
T ss_dssp             HHHHHHHHHHHHHTTCSSCSSSCHHHHHHHHHHHHHHHHHHTCCC-
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             9999999999998599999989999999999999999998875889


No 3  
>>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} (A:)
Probab=25.55  E-value=34  Score=16.88  Aligned_cols=24  Identities=33%  Similarity=0.545  Sum_probs=20.0

Q ss_pred             CCCCCCHHHHHHCCCHHHHHHHHHH
Q ss_conf             4222211356530725668999998
Q gi|254780645|r    9 SKKSKGAQVKENLGLQKDLNHIRQI   33 (91)
Q Consensus         9 skkskgaqvkenlglqkdlnhirqi   33 (91)
                      .|..+-.|+.+.|-||+| +|++|+
T Consensus        49 mK~t~s~qal~SLqLQr~-~HlKQ~   72 (97)
T 2crb_A           49 MKLTESEQAHLSLELQRD-SHMKQL   72 (97)
T ss_dssp             HTTCCCHHHHHHHHHHHH-HHHHHH
T ss_pred             HHCCCCHHHHHHHHHHHH-HHHHHH
T ss_conf             864663999999999799-999899


No 4  
>>1irq_A Omega transcriptional repressor; ribbon-helix-helix, gene regulation; 1.50A {Streptococcus pyogenes} (A:)
Probab=24.08  E-value=63  Score=15.35  Aligned_cols=36  Identities=33%  Similarity=0.541  Sum_probs=25.8

Q ss_pred             HCCCHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             307256689999983---004110134567889999998630
Q gi|254780645|r   20 NLGLQKDLNHIRQII---NEGDFKSAAVKMRILVESFLRKLS   58 (91)
Q Consensus        20 nlglqkdlnhirqii---negdfksaavkmrilvesflrkls   58 (91)
                      ....|+||.||-.|-   |.|..|.   -|.|-.+|.|++.-
T Consensus        29 tvrvradl~hiikietaknggnvke---vme~~l~~~lk~~l   67 (71)
T 1irq_A           29 TVRVRADLHHIIKIETAKNGGNVKE---VMDQALEEYIRKYL   67 (71)
T ss_dssp             EEEEEHHHHHHHHHHHHHHTCCHHH---HHHHHHHHHHHHHS
T ss_pred             EEEEEECCEEEEEEEECCCCCCHHH---HHHHHHHHHHHHHC
T ss_conf             3787602100466775336888999---99999999999866


No 5  
>>2b3y_A Iron-responsive element binding protein 1; IRP1 IRE-IRP1 aconitase activity, lyase; 1.85A {Homo sapiens} (A:30-79,A:232-239)
Probab=18.12  E-value=58  Score=15.56  Aligned_cols=19  Identities=26%  Similarity=0.447  Sum_probs=14.1

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q ss_conf             3456788999999863000
Q gi|254780645|r   42 AAVKMRILVESFLRKLSEK   60 (91)
Q Consensus        42 aavkmrilvesflrklsek   60 (91)
                      --.-+|||.|+.||...+.
T Consensus         5 LPySIRILLEnlLRn~Dg~   23 (58)
T 2b3y_A            5 LPFSIRVLLEAAIRNCDEF   23 (58)
T ss_dssp             SCHHHHHHHHHHHHTCCSS
T ss_pred             CCCHHHHHHHHHHHHCCCC
T ss_conf             7832999999888728987


No 6  
>>1u7l_A Vacuolar ATP synthase subunit C; hydrolase, structural protein; HET: TLA; 1.75A {Saccharomyces cerevisiae} (A:55-177,A:262-321)
Probab=16.64  E-value=71  Score=15.04  Aligned_cols=10  Identities=60%  Similarity=0.953  Sum_probs=6.4

Q ss_pred             HHHHHHHHHH
Q ss_conf             7889999998
Q gi|254780645|r   46 MRILVESFLR   55 (91)
Q Consensus        46 mrilvesflr   55 (91)
                      +|+.|||.||
T Consensus       171 lRvFVESVLR  180 (183)
T 1u7l_A          171 LRVYVESVLR  180 (183)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
T ss_conf             8644322332


No 7  
>>1ny7_2 Cowpea mosaic virus, large (L) subunit; comovirus, viral coat protein, cowpea mosaic virus (CPMV), icosahedral virus; 3.00A {Cowpea mosaic virus} (2:1-183)
Probab=15.49  E-value=92  Score=14.38  Aligned_cols=25  Identities=32%  Similarity=0.497  Sum_probs=20.4

Q ss_pred             CCCCCCCEECCCCCCCCCCCCEEEEE
Q ss_conf             01675420011200233565306887
Q gi|254780645|r   63 ISIPGSIKARKNCWNLSTSTGAYLRI   88 (91)
Q Consensus        63 isipgsikarkncwnlststgaylri   88 (91)
                      --|||+||.+-+| |++..||--|-|
T Consensus        66 h~I~Gkik~~~t~-nvp~ntGi~Lai   90 (183)
T 1ny7_2           66 HVITGKIKVTATT-NISDNSGCCLML   90 (183)
T ss_dssp             SSBCSEEEEEEEC-CCCTTCCCEEEE
T ss_pred             CCCCCEEEEEEEE-CCCCCCCEEEEE
T ss_conf             1415438999995-689877637999


No 8  
>>1pgl_2 Bean POD mottle virus large (L) subunit; comovirus, viral coat protein, bean POD mottle virus (BPMV), icosahedral virus, virus/RNA complex; 2.80A {Bean-pod mottle virus} (2:1-182)
Probab=14.73  E-value=91  Score=14.41  Aligned_cols=25  Identities=28%  Similarity=0.316  Sum_probs=20.3

Q ss_pred             CCCCCCCEECCCCCCCCCCCCEEEEE
Q ss_conf             01675420011200233565306887
Q gi|254780645|r   63 ISIPGSIKARKNCWNLSTSTGAYLRI   88 (91)
Q Consensus        63 isipgsikarkncwnlststgaylri   88 (91)
                      --|||+||.+-+| |+...||--|-|
T Consensus        66 h~i~Gkik~~~t~-nvp~ntGigLai   90 (182)
T 1pgl_2           66 HRIKGMIKMVATV-GIPENTGIALAC   90 (182)
T ss_dssp             SCBCEEEEEEEEC-CCCTTCCCEEEE
T ss_pred             CCCCCEEEEEEEE-CCCCCCCEEEEE
T ss_conf             4115438999997-679877627999


No 9  
>>3gzu_A Inner capsid protein VP2; 7RP, DLP, metal- binding, virion, zinc, core protein, RNA-binding, icosaderal virus; 3.80A {Rotavirus A} (A:181-227,A:512-592,A:768-800)
Probab=13.84  E-value=69  Score=15.09  Aligned_cols=26  Identities=31%  Similarity=0.565  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             45678899999986300003016754
Q gi|254780645|r   43 AVKMRILVESFLRKLSEKESISIPGS   68 (91)
Q Consensus        43 avkmrilvesflrklsekesisipgs   68 (91)
                      .-||..+||.|+.||.--..-.+|..
T Consensus        91 q~KMk~iVedFlkkLhIFDv~kvPdD  116 (161)
T 3gzu_A           91 QKKMKAIVEDFLKRLHIFDVARVPDD  116 (161)
T ss_dssp             TSCSSHHHHHHHHTSTTSCSTTSCHH
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCHH
T ss_conf             99999999999976601235669847


No 10 
>>2o9c_A Bacteriophytochrome; phytochrome chromophore, figure-OF-eight knot, phytochromobilin, biliverdin, PAS, GAF, transferase; HET: LBV; 1.45A {Deinococcus radiodurans} (A:1-52,A:149-342)
Probab=12.32  E-value=70  Score=15.06  Aligned_cols=11  Identities=73%  Similarity=1.165  Sum_probs=0.0

Q ss_pred             HHCCCCCCCCC
Q ss_conf             00030167542
Q gi|254780645|r   59 EKESISIPGSI   69 (91)
Q Consensus        59 ekesisipgsi   69 (91)
                      +.|.|.|||||
T Consensus        40 ~~~~~~~~~~~   50 (246)
T 2o9c_A           40 EREPIHIPGSI   50 (246)
T ss_dssp             GGCCTTCCSEE
T ss_pred             CCCCCCCCCCC
T ss_conf             51003687752


Done!