Query gi|254780645|ref|YP_003065058.1| hypothetical protein CLIBASIA_02660 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 91 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Wed Jun 1 14:55:23 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780645.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2wpv_A GET4, UPF0363 protein 41.2 22 0.00065 18.0 2.7 48 18-65 8-55 (130) 2 >3e9m_A Oxidoreductase, GFO/ID 33.3 39 0.0011 16.6 2.9 40 23-62 130-175 (181) 3 >2crb_A Nuclear receptor bindi 25.6 34 0.001 16.9 1.6 24 9-33 49-72 (97) 4 >1irq_A Omega transcriptional 24.1 63 0.0019 15.4 3.0 36 20-58 29-67 (71) 5 >2b3y_A Iron-responsive elemen 18.1 58 0.0017 15.6 1.5 19 42-60 5-23 (58) 6 >1u7l_A Vacuolar ATP synthase 16.6 71 0.0021 15.0 1.6 10 46-55 171-180 (183) 7 >1ny7_2 Cowpea mosaic virus, l 15.5 92 0.0027 14.4 2.0 25 63-88 66-90 (183) 8 >1pgl_2 Bean POD mottle virus 14.7 91 0.0027 14.4 1.8 25 63-88 66-90 (182) 9 >3gzu_A Inner capsid protein V 13.8 69 0.0021 15.1 1.0 26 43-68 91-116 (161) 10 >2o9c_A Bacteriophytochrome; p 12.3 70 0.0021 15.1 0.6 11 59-69 40-50 (246) No 1 >>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding, GET5, GET4; 1.99A {Saccharomyces cerevisiae} (A:1-130) Probab=41.25 E-value=22 Score=17.97 Aligned_cols=48 Identities=23% Similarity=0.398 Sum_probs=37.9 Q ss_pred HHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 653072566899999830041101345678899999986300003016 Q gi|254780645|r 18 KENLGLQKDLNHIRQIINEGDFKSAAVKMRILVESFLRKLSEKESISI 65 (91) Q Consensus 18 kenlglqkdlnhirqiinegdfksaavkmrilvesflrklsekesisi 65 (91) ..+-|+++-+..++.-|+||+|-.|.-..|.+.--+++.-.-.|.+.| T Consensus 8 ~~~~~v~r~l~kl~~~I~~G~yYEAhQ~~rtl~~Ry~~~kky~eAi~l 55 (130) T 2wpv_A 8 AVQAKLAKTLQRFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIEL 55 (130) T ss_dssp ----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHH T ss_conf 322889999999998764658089999999999998711069999999 No 2 >>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} (A:1-127,A:277-330) Probab=33.25 E-value=39 Score=16.56 Aligned_cols=40 Identities=23% Similarity=0.424 Sum_probs=29.0 Q ss_pred CHHHHHHHHHHHCCCCCCHHHHHH------HHHHHHHHHHHHHHCC Q ss_conf 256689999983004110134567------8899999986300003 Q gi|254780645|r 23 LQKDLNHIRQIINEGDFKSAAVKM------RILVESFLRKLSEKES 62 (91) Q Consensus 23 lqkdlnhirqiinegdfksaavkm------rilvesflrklsekes 62 (91) ..+..+|+.|.||+|..+|.-..- --+||++.|..-.||. T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (181) T 3e9m_A 130 FTYEINHVNQCLQDKKLTSPVXTKELTIATVKIVESFYQEWFDNEG 175 (181) T ss_dssp HHHHHHHHHHHHHTTCSSCSSSCHHHHHHHHHHHHHHHHHHTCCC- T ss_pred HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 9999999999998599999989999999999999999998875889 No 3 >>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} (A:) Probab=25.55 E-value=34 Score=16.88 Aligned_cols=24 Identities=33% Similarity=0.545 Sum_probs=20.0 Q ss_pred CCCCCCHHHHHHCCCHHHHHHHHHH Q ss_conf 4222211356530725668999998 Q gi|254780645|r 9 SKKSKGAQVKENLGLQKDLNHIRQI 33 (91) Q Consensus 9 skkskgaqvkenlglqkdlnhirqi 33 (91) .|..+-.|+.+.|-||+| +|++|+ T Consensus 49 mK~t~s~qal~SLqLQr~-~HlKQ~ 72 (97) T 2crb_A 49 MKLTESEQAHLSLELQRD-SHMKQL 72 (97) T ss_dssp HTTCCCHHHHHHHHHHHH-HHHHHH T ss_pred HHCCCCHHHHHHHHHHHH-HHHHHH T ss_conf 864663999999999799-999899 No 4 >>1irq_A Omega transcriptional repressor; ribbon-helix-helix, gene regulation; 1.50A {Streptococcus pyogenes} (A:) Probab=24.08 E-value=63 Score=15.35 Aligned_cols=36 Identities=33% Similarity=0.541 Sum_probs=25.8 Q ss_pred HCCCHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 307256689999983---004110134567889999998630 Q gi|254780645|r 20 NLGLQKDLNHIRQII---NEGDFKSAAVKMRILVESFLRKLS 58 (91) Q Consensus 20 nlglqkdlnhirqii---negdfksaavkmrilvesflrkls 58 (91) ....|+||.||-.|- |.|..|. -|.|-.+|.|++.- T Consensus 29 tvrvradl~hiikietaknggnvke---vme~~l~~~lk~~l 67 (71) T 1irq_A 29 TVRVRADLHHIIKIETAKNGGNVKE---VMDQALEEYIRKYL 67 (71) T ss_dssp EEEEEHHHHHHHHHHHHHHTCCHHH---HHHHHHHHHHHHHS T ss_pred EEEEEECCEEEEEEEECCCCCCHHH---HHHHHHHHHHHHHC T ss_conf 3787602100466775336888999---99999999999866 No 5 >>2b3y_A Iron-responsive element binding protein 1; IRP1 IRE-IRP1 aconitase activity, lyase; 1.85A {Homo sapiens} (A:30-79,A:232-239) Probab=18.12 E-value=58 Score=15.56 Aligned_cols=19 Identities=26% Similarity=0.447 Sum_probs=14.1 Q ss_pred HHHHHHHHHHHHHHHHHHH Q ss_conf 3456788999999863000 Q gi|254780645|r 42 AAVKMRILVESFLRKLSEK 60 (91) Q Consensus 42 aavkmrilvesflrklsek 60 (91) --.-+|||.|+.||...+. T Consensus 5 LPySIRILLEnlLRn~Dg~ 23 (58) T 2b3y_A 5 LPFSIRVLLEAAIRNCDEF 23 (58) T ss_dssp SCHHHHHHHHHHHHTCCSS T ss_pred CCCHHHHHHHHHHHHCCCC T ss_conf 7832999999888728987 No 6 >>1u7l_A Vacuolar ATP synthase subunit C; hydrolase, structural protein; HET: TLA; 1.75A {Saccharomyces cerevisiae} (A:55-177,A:262-321) Probab=16.64 E-value=71 Score=15.04 Aligned_cols=10 Identities=60% Similarity=0.953 Sum_probs=6.4 Q ss_pred HHHHHHHHHH Q ss_conf 7889999998 Q gi|254780645|r 46 MRILVESFLR 55 (91) Q Consensus 46 mrilvesflr 55 (91) +|+.|||.|| T Consensus 171 lRvFVESVLR 180 (183) T 1u7l_A 171 LRVYVESVLR 180 (183) T ss_dssp HHHHHHHHHH T ss_pred HHHHHHHHHH T ss_conf 8644322332 No 7 >>1ny7_2 Cowpea mosaic virus, large (L) subunit; comovirus, viral coat protein, cowpea mosaic virus (CPMV), icosahedral virus; 3.00A {Cowpea mosaic virus} (2:1-183) Probab=15.49 E-value=92 Score=14.38 Aligned_cols=25 Identities=32% Similarity=0.497 Sum_probs=20.4 Q ss_pred CCCCCCCEECCCCCCCCCCCCEEEEE Q ss_conf 01675420011200233565306887 Q gi|254780645|r 63 ISIPGSIKARKNCWNLSTSTGAYLRI 88 (91) Q Consensus 63 isipgsikarkncwnlststgaylri 88 (91) --|||+||.+-+| |++..||--|-| T Consensus 66 h~I~Gkik~~~t~-nvp~ntGi~Lai 90 (183) T 1ny7_2 66 HVITGKIKVTATT-NISDNSGCCLML 90 (183) T ss_dssp SSBCSEEEEEEEC-CCCTTCCCEEEE T ss_pred CCCCCEEEEEEEE-CCCCCCCEEEEE T ss_conf 1415438999995-689877637999 No 8 >>1pgl_2 Bean POD mottle virus large (L) subunit; comovirus, viral coat protein, bean POD mottle virus (BPMV), icosahedral virus, virus/RNA complex; 2.80A {Bean-pod mottle virus} (2:1-182) Probab=14.73 E-value=91 Score=14.41 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=20.3 Q ss_pred CCCCCCCEECCCCCCCCCCCCEEEEE Q ss_conf 01675420011200233565306887 Q gi|254780645|r 63 ISIPGSIKARKNCWNLSTSTGAYLRI 88 (91) Q Consensus 63 isipgsikarkncwnlststgaylri 88 (91) --|||+||.+-+| |+...||--|-| T Consensus 66 h~i~Gkik~~~t~-nvp~ntGigLai 90 (182) T 1pgl_2 66 HRIKGMIKMVATV-GIPENTGIALAC 90 (182) T ss_dssp SCBCEEEEEEEEC-CCCTTCCCEEEE T ss_pred CCCCCEEEEEEEE-CCCCCCCEEEEE T ss_conf 4115438999997-679877627999 No 9 >>3gzu_A Inner capsid protein VP2; 7RP, DLP, metal- binding, virion, zinc, core protein, RNA-binding, icosaderal virus; 3.80A {Rotavirus A} (A:181-227,A:512-592,A:768-800) Probab=13.84 E-value=69 Score=15.09 Aligned_cols=26 Identities=31% Similarity=0.565 Sum_probs=19.9 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCC Q ss_conf 45678899999986300003016754 Q gi|254780645|r 43 AVKMRILVESFLRKLSEKESISIPGS 68 (91) Q Consensus 43 avkmrilvesflrklsekesisipgs 68 (91) .-||..+||.|+.||.--..-.+|.. T Consensus 91 q~KMk~iVedFlkkLhIFDv~kvPdD 116 (161) T 3gzu_A 91 QKKMKAIVEDFLKRLHIFDVARVPDD 116 (161) T ss_dssp TSCSSHHHHHHHHTSTTSCSTTSCHH T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCHH T ss_conf 99999999999976601235669847 No 10 >>2o9c_A Bacteriophytochrome; phytochrome chromophore, figure-OF-eight knot, phytochromobilin, biliverdin, PAS, GAF, transferase; HET: LBV; 1.45A {Deinococcus radiodurans} (A:1-52,A:149-342) Probab=12.32 E-value=70 Score=15.06 Aligned_cols=11 Identities=73% Similarity=1.165 Sum_probs=0.0 Q ss_pred HHCCCCCCCCC Q ss_conf 00030167542 Q gi|254780645|r 59 EKESISIPGSI 69 (91) Q Consensus 59 ekesisipgsi 69 (91) +.|.|.||||| T Consensus 40 ~~~~~~~~~~~ 50 (246) T 2o9c_A 40 EREPIHIPGSI 50 (246) T ss_dssp GGCCTTCCSEE T ss_pred CCCCCCCCCCC T ss_conf 51003687752 Done!