RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780645|ref|YP_003065058.1| hypothetical protein
CLIBASIA_02660 [Candidatus Liberibacter asiaticus str. psy62]
         (91 letters)



>gnl|CDD|149985 pfam09127, Leuk-A4-hydro_C, Leukotriene A4 hydrolase, C-terminal.
           Members of this family adopt a structure consisting of
          two layers of parallel alpha-helices, five in the inner
          layer and four in the outer, arranged in an
          antiparallel manner, with perpendicular loops
          containing short helical segments on top. They are
          required for the formation of a deep cleft harbouring
          the catalytic Zn2+ site in Leukotriene A4 hydrolase.
          Length = 143

 Score = 27.2 bits (61), Expect = 0.98
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 53 FLRKLSEKESISIPGSIKARKNCWNLSTSTGAYLRIR 89
          FL +L E++ +     +KA    + LS S  A +R R
Sbjct: 39 FLDRLLEEKPLP-LEQVKALDEVYKLSNSKNAEIRFR 74


>gnl|CDD|129217 TIGR00111, pelota, probable translation factor pelota.  This
          model describes the Drosophila protein Pelota, the
          budding yeast protein DOM34 which it can replace, and a
          set of closely related archaeal proteins. Members
          contain a proposed RNA binding motif. The meiotic
          defect in pelota mutants may be a complex result of a
          protein translation defect, as suggested in yeast by
          ribosomal protein RPS30A being a multicopy suppressor
          and by an altered polyribosome profile in DOM34 mutants
          rescued by RPS30A. This family is homologous to a
          family of peptide chain release factors. Pelota is
          proposed to act in protein translation.
          Length = 351

 Score = 26.3 bits (58), Expect = 1.6
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 5/65 (7%)

Query: 26 DLNHIRQIINEGDFKSAAVKMRILVESFLRKLSEKESISIPGSIKARKNCWNLSTSTGAY 85
          DL H+ QII +GD + A  K R      +R    K+++ +   I+     +++ T     
Sbjct: 24 DLWHLYQIIEKGDVEFAFTKRRTQDLDKIRSDKSKDTVKL--GIEVESVEFDMKTE---R 78

Query: 86 LRIRG 90
          LR +G
Sbjct: 79 LRYKG 83


>gnl|CDD|185041 PRK15083, PRK15083, PTS system mannitol-specific transporter
           subunit IICBA; Provisional.
          Length = 639

 Score = 25.8 bits (57), Expect = 2.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 12  SKGAQVKENLGLQKDLNHIRQII 34
           SKGA       +  DL+H+R+II
Sbjct: 360 SKGASPLAAGDVTNDLSHVRKII 382


>gnl|CDD|181878 PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed.
          Length = 777

 Score = 25.5 bits (57), Expect = 2.8
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 18/49 (36%)

Query: 47  RILVESFLRKLSEKESISIP----GSIK--ARKNCWNLSTSTGAYLRIR 89
           R+L+E     LS    IS+P    G  K  A         +TGAY RIR
Sbjct: 323 RMLMEC----LSVGRGISLPSNSTGGAKLAAL--------ATGAYARIR 359


>gnl|CDD|184338 PRK13805, PRK13805, bifunctional acetaldehyde-CoA/alcohol
           dehydrogenase; Provisional.
          Length = 862

 Score = 24.4 bits (54), Expect = 6.4
 Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 1/24 (4%)

Query: 49  LVESFLRKLSE-KESISIPGSIKA 71
            VES ++ + E K  + IP SIK 
Sbjct: 794 KVESLIKAIEELKAELGIPMSIKE 817


>gnl|CDD|149560 pfam08547, CIA30, Complex I intermediate-associated protein 30
          (CIA30).  This protein is associated with mitochondrial
          Complex I intermediate-associated protein 30 (CIA30) in
          human and mouse. The family is also present in
          Schizosaccharomyces pombe which does not contain the
          NADH dehydrogenase component of complex I, or many of
          the other essential subunits. This means it is possible
          that this family of protein may not be directly
          involved in oxidative phosphorylation.
          Length = 161

 Score = 24.5 bits (54), Expect = 7.4
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 70 KARKNCWNLSTSTGAYLRIRG 90
          K RK   +LS  TG  LR++G
Sbjct: 56 KNRKPPLDLSGYTGLELRVKG 76


>gnl|CDD|177973 PLN02339, PLN02339, NAD+ synthase (glutamine-hydrolysing).
          Length = 700

 Score = 23.9 bits (52), Expect = 9.8
 Identities = 10/27 (37%), Positives = 12/27 (44%)

Query: 8   PSKKSKGAQVKENLGLQKDLNHIRQII 34
           P  K  G    ENL LQ     IR ++
Sbjct: 466 PRYKVDGGSNAENLALQNIQARIRMVL 492


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.316    0.131    0.371 

Gapped
Lambda     K      H
   0.267   0.0706    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,363,804
Number of extensions: 68756
Number of successful extensions: 148
Number of sequences better than 10.0: 1
Number of HSP's gapped: 148
Number of HSP's successfully gapped: 14
Length of query: 91
Length of database: 5,994,473
Length adjustment: 59
Effective length of query: 32
Effective length of database: 4,719,601
Effective search space: 151027232
Effective search space used: 151027232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.1 bits)