RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780645|ref|YP_003065058.1| hypothetical protein
CLIBASIA_02660 [Candidatus Liberibacter asiaticus str. psy62]
         (91 letters)



>3oby_A Protein pelota homolog; SM fold, hydrolase; 2.90A {Archaeoglobus
          fulgidus}
          Length = 352

 Score = 28.8 bits (64), Expect = 0.30
 Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 5/65 (7%)

Query: 26 DLNHIRQIINEGDFKSAAVKMRILVESFLRKLSEKESISIPGSIKARKNCWNLSTSTGAY 85
          DL H+R II +GD   A  K        LR   E  ++ +   I+  K  +         
Sbjct: 24 DLWHLRFIIEKGDVVFATTKRASQSSDKLRSDKEMVTVRL--GIEVEKVEF---HRFANR 78

Query: 86 LRIRG 90
          LR+ G
Sbjct: 79 LRVSG 83


>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking,
          tail-anchored protein, protein binding, GET5, GET4;
          1.99A {Saccharomyces cerevisiae}
          Length = 312

 Score = 27.5 bits (61), Expect = 0.75
 Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 3/72 (4%)

Query: 18 KENLGLQKDLNHIRQIINEGDFKSAAVKMRILVESFLRKLSEKESISI--PGSIK-ARKN 74
               L K L      I  GD+  A   +R +   ++R  S + +I +   G++   +  
Sbjct: 8  AVQAKLAKTLQRFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAK 67

Query: 75 CWNLSTSTGAYL 86
               T    YL
Sbjct: 68 QGGSGTDLIFYL 79


>1hw4_A TS, thymidylate synthase; methyltransferase; HET: CME; 2.06A
          {Homo sapiens} SCOP: d.117.1.1
          Length = 355

 Score = 26.1 bits (57), Expect = 2.1
 Identities = 9/35 (25%), Positives = 17/35 (48%)

Query: 7  PPSKKSKGAQVKENLGLQKDLNHIRQIINEGDFKS 41
          PP+ + + A+ +   G  + L  I+ I+  G  K 
Sbjct: 56 PPAAQERDAEPRPPHGELQYLGQIQHILRCGVRKD 90


>2a3l_A AMP deaminase, AMPD; atampd, AT2G38280, adenosine 5'-monophosphate
           deaminase, coformycin 5'-phosphate, structural genomics;
           HET: CF5; 3.34A {Arabidopsis thaliana} SCOP: c.1.9.1
          Length = 701

 Score = 25.7 bits (56), Expect = 2.8
 Identities = 7/30 (23%), Positives = 18/30 (60%), Gaps = 1/30 (3%)

Query: 25  KDLNHIRQIINEGDFKSAAVK-MRILVESF 53
            DL+H+ ++I  G+ ++   + + +L + F
Sbjct: 192 TDLHHVLKVIAAGNIRTLCHRRLVLLEQKF 221


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
            acid synthase, acyl-carrier-protein, beta-ketoacyl
            reductase, beta-ketoacyl synthase, dehydratase; 4.00A
            {Saccharomyces cerevisiae}
          Length = 1688

 Score = 24.8 bits (53), Expect = 5.0
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 3/35 (8%)

Query: 39   FKSAAVKMRILVESFLRKLSEKES---ISIPGSIK 70
            FK   V+  IL ESF+  +S   +   IS  G IK
Sbjct: 1066 FKDEPVQNDILQESFINTMSAWVNMLLISSSGPIK 1100


>1nm8_A Carnitine O-acetyltransferase; two equally sized domains,
           anti-parallel beta-strand; 1.60A {Homo sapiens} SCOP:
           c.43.1.3 c.43.1.3 PDB: 1s5o_A* 2h3u_A* 2h3p_A* 1t7q_A*
           1t7n_A 1t7o_A* 1ndb_A 1ndf_A* 1ndi_A* 2h3w_A*
          Length = 616

 Score = 24.2 bits (52), Expect = 7.3
 Identities = 8/33 (24%), Positives = 16/33 (48%), Gaps = 4/33 (12%)

Query: 54  LRKLSEKESISIPG----SIKARKNCWNLSTST 82
           L+  + ++ +S P     +  A    ++LSTS 
Sbjct: 502 LKLQAIEDLVSTPDIFMDTSYAIAMHFHLSTSQ 534


>3dma_A Exopolyphosphatase-related protein; structural genomics, PSI-2,
          protein structure initiative, northeast structural
          genomics consortium, NESG; 2.25A {Bacteroides fragilis}
          Length = 343

 Score = 23.9 bits (50), Expect = 9.1
 Identities = 4/22 (18%), Positives = 9/22 (40%)

Query: 44 VKMRILVESFLRKLSEKESISI 65
          V  +  ++ F +     + I I
Sbjct: 5  VIAQAHIDHFTKWFERADKIVI 26


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.316    0.131    0.371 

Gapped
Lambda     K      H
   0.267   0.0548    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 736,683
Number of extensions: 26837
Number of successful extensions: 90
Number of sequences better than 10.0: 1
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 16
Length of query: 91
Length of database: 5,693,230
Length adjustment: 58
Effective length of query: 33
Effective length of database: 4,287,078
Effective search space: 141473574
Effective search space used: 141473574
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.4 bits)