Query gi|254780646|ref|YP_003065059.1| 50S ribosomal protein L21 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 103
No_of_seqs 103 out of 1616
Neff 5.4
Searched_HMMs 33803
Date Wed Jun 1 15:48:34 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780646.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >3i1n_R 50S ribosomal protein 100.0 2.9E-41 1.4E-45 250.7 8.0 103 1-103 1-103 (103)
2 >3bbo_T Ribosomal protein L21; 100.0 8E-40 2.4E-44 242.7 -0.6 102 1-102 124-226 (257)
3 >2zjr_O 50S ribosomal protein 100.0 2.8E-38 8.2E-43 234.1 5.0 99 1-102 1-99 (100)
4 >2j01_V 50S ribosomal protein 99.8 1.6E-22 4.6E-27 146.1 0.9 67 1-69 1-67 (74)
5 >2j01_V 50S ribosomal protein 97.0 9.1E-05 2.7E-09 46.9 -0.6 27 69-95 1-27 (27)
6 >2wfw_A ARC; ATP-binding prote 56.3 5.7 0.00017 20.2 1.6 39 1-41 20-58 (66)
7 >2ivw_A PILP pilot protein; li 46.1 19 0.00055 17.3 3.0 39 1-39 39-79 (113)
8 >1yhf_A Hypothetical protein S 40.4 28 0.00083 16.3 3.8 22 3-24 71-92 (115)
9 >2arc_A ARAC, arabinose operon 37.3 31 0.00093 16.0 4.0 23 3-25 49-71 (164)
10 >3d82_A Cupin 2, conserved bar 35.1 28 0.00083 16.3 2.5 22 3-24 61-82 (102)
11 >2pyt_A Ethanolamine utilizati 32.4 38 0.0011 15.5 3.8 22 3-24 86-107 (133)
12 >1v70_A Probable antibiotics s 32.2 38 0.0011 15.5 4.0 22 3-24 60-81 (105)
13 >2ohf_A Protein OLA1, GTP-bind 29.5 12 0.00035 18.4 -0.2 20 5-24 44-63 (72)
14 >2ozj_A Cupin 2, conserved bar 28.8 44 0.0013 15.2 4.0 22 3-24 69-90 (114)
15 >2pfw_A Cupin 2, conserved bar 27.1 47 0.0014 15.0 4.0 22 3-24 65-86 (116)
16 >1vj2_A Novel manganese-contai 26.9 45 0.0013 15.1 2.4 22 3-24 79-100 (126)
17 >1y9q_A Transcriptional regula 23.6 55 0.0016 14.6 4.2 23 3-25 61-83 (116)
18 >2vpv_A Protein MIF2, MIF2P; n 20.7 64 0.0019 14.3 3.8 22 3-24 121-142 (166)
19 >2gu9_A Tetracenomycin polyket 20.2 65 0.0019 14.2 3.7 23 3-25 55-77 (113)
20 >1wpg_A Sarcoplasmic/endoplasm 20.1 65 0.0019 14.2 2.1 36 14-54 48-83 (130)
No 1
>>3i1n_R 50S ribosomal protein L21; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1vs8_R 2aw4_R 2awb_R 1vs6_R 2i2v_R 2j28_R 2i2t_R* 2qao_R* 2qba_R* 2qbc_R* 2qbe_R 2qbg_R 2qbi_R* 2qbk_R* 2qov_R 2qox_R 2qoz_R* 2qp1_R* 2rdo_R 2vhm_R ... (R:)
Probab=100.00 E-value=2.9e-41 Score=250.70 Aligned_cols=103 Identities=42% Similarity=0.700 Sum_probs=101.9
Q ss_pred CEEEEEECCEEEEECCCCEEEEECCCCCCCCCEEHHHEEEEECCCCCEECCCCCCCCEEEEEEEECCCCCCEEEEEECCC
Q ss_conf 96799999888897699899982446789972130421453068851226743378679999996345673899996388
Q gi|254780646|r 1 MFAIIEHGGKQSRVSATDTITVEKIVAKDGDNIRFDNVLAVGKDEHLSVGTPRVEGAYVEAEVVKQLRTKKVVVFKKRRR 80 (103)
Q Consensus 1 MyAIi~~gGkQykV~~Gd~l~v~~l~~~~G~~i~l~~VL~~~~~~~~~iG~P~l~~a~V~a~V~~~~k~~Ki~vfK~krR 80 (103)
|||||++||+||||++||.|.+|++++++||.++|++|||+++++++.+|+|+|++|+|+|+|++|.+++|+++||||||
T Consensus 1 myAIi~~ggkQykV~~Gd~i~v~~l~~~~Gd~i~l~~Vl~v~~~~~~~iG~P~l~~~~V~a~V~~~~k~~Ki~v~K~krr 80 (103)
T 3i1n_R 1 MYAVFQSGGKQHRVSEGQTVRLEKLDIATGETVEFAEVLMIANGEEVKIGVPFVDGGVIKAEVVAHGRGEKVKIVKFRRR 80 (103)
T ss_dssp CEEEECCSSSCCEEETTCCEEESCCCSCTTCEEEECCEEEEESSSCEECSSSSCTTCBEEEEEEEEEECCCEEEEEEETT
T ss_pred CEEEEEECCEEEEECCCCEEEEECCCCCCCCCEEHHHEEEECCCCCEEECCCCCCCCEEEEEEEEECCCCCEEEEEECCC
T ss_conf 98999979999999389999996467788870882550480279817855975456389999953047762899996386
Q ss_pred CCCEEECCCCCCCEEEEEEEEEC
Q ss_conf 87166427457600999967619
Q gi|254780646|r 81 QNYRRTHGHRQEMTVVRITSIVT 103 (103)
Q Consensus 81 K~yrr~~GhRq~~T~ikI~~I~s 103 (103)
|+|+|++||||+||+|+|++|.+
T Consensus 81 K~~~R~~GhRq~~T~irI~~I~a 103 (103)
T 3i1n_R 81 KHYRKQQGHRQWFTDVKITGISA 103 (103)
T ss_dssp TTEEEEEEECCEEEEECCCCCBC
T ss_pred CCCCCCCCCCCCEEEEEEEEEEC
T ss_conf 76334685358717999988869
No 2
>>3bbo_T Ribosomal protein L21; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} (T:)
Probab=100.00 E-value=8e-40 Score=242.65 Aligned_cols=102 Identities=39% Similarity=0.573 Sum_probs=100.2
Q ss_pred CEEEEEECCEEEEECCCCEEEEECCC-CCCCCCEEHHHEEEEECCCCCEECCCCCCCCEEEEEEEECCCCCCEEEEEECC
Q ss_conf 96799999888897699899982446-78997213042145306885122674337867999999634567389999638
Q gi|254780646|r 1 MFAIIEHGGKQSRVSATDTITVEKIV-AKDGDNIRFDNVLAVGKDEHLSVGTPRVEGAYVEAEVVKQLRTKKVVVFKKRR 79 (103)
Q Consensus 1 MyAIi~~gGkQykV~~Gd~l~v~~l~-~~~G~~i~l~~VL~~~~~~~~~iG~P~l~~a~V~a~V~~~~k~~Ki~vfK~kr 79 (103)
|||||++||+||||++||.|.+|++. .++||.|.|++|||+++++++.+|+|+|++++|+|+|++|++++|+++|||||
T Consensus 124 ~yAvv~~~gkQykVt~Gd~i~v~~l~~~~~Gd~i~l~~Vllvgs~~~tliG~P~i~~~~V~a~V~e~~~~~k~~~~K~Kr 203 (257)
T 3bbo_T 124 IFAVVVIGSRQYIVIPGRWIYTQRLKGATVNDKIVLNKVLLVGTKASTYIGTPIVTNAAVHAVVEEQLLDDKVIVFKYKK 203 (257)
T ss_dssp CCCCCCSSSCCCCCCTTCCCCCCCCTTSCTTCEEECTTCCCBCSSSCBCCSSSSCSSCCCEEECCCCCCCSCCCEEECCT
T ss_pred EEEEEEECCEEEEECCCCEEEEECCCCCCCCCEEEEEEEEEEECCCCEEECCCCCCCCEEEEEEEHHCCCCCEEEEEECC
T ss_conf 59999989999998389999980668999999899803599927995587884578977999996113878479998269
Q ss_pred CCCCEEECCCCCCCEEEEEEEEE
Q ss_conf 88716642745760099996761
Q gi|254780646|r 80 RQNYRRTHGHRQEMTVVRITSIV 102 (103)
Q Consensus 80 RK~yrr~~GhRq~~T~ikI~~I~ 102 (103)
||+|+|++||||+||+|+|++|.
T Consensus 204 Rk~~~R~~ghRq~~T~lrI~~I~ 226 (257)
T 3bbo_T 204 KKNYRRNIGHRQPITRIKITGIT 226 (257)
T ss_dssp TTTCCEEECCCCCCCCCCCCCCC
T ss_pred CCCCCCCCCCCCCCEEEEEEEEE
T ss_conf 87754678707870599997886
No 3
>>2zjr_O 50S ribosomal protein L21; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} (O:)
Probab=100.00 E-value=2.8e-38 Score=234.05 Aligned_cols=99 Identities=39% Similarity=0.572 Sum_probs=96.5
Q ss_pred CEEEEEECCEEEEECCCCEEEEECCCCCCCCCEEHHHEEEEECCCCCEECCCCCCCCEEEEEEEECCCCCCEEEEEECCC
Q ss_conf 96799999888897699899982446789972130421453068851226743378679999996345673899996388
Q gi|254780646|r 1 MFAIIEHGGKQSRVSATDTITVEKIVAKDGDNIRFDNVLAVGKDEHLSVGTPRVEGAYVEAEVVKQLRTKKVVVFKKRRR 80 (103)
Q Consensus 1 MyAIi~~gGkQykV~~Gd~l~v~~l~~~~G~~i~l~~VL~~~~~~~~~iG~P~l~~a~V~a~V~~~~k~~Ki~vfK~krR 80 (103)
|||||++||+||||++||.|.+|++++++||.+.|++|||+++. .+|+|+++||+|+|+|++|++++|+++||||||
T Consensus 1 myAIi~~ggkQykV~~Gd~i~v~~l~~~~Gd~i~l~~Vl~ig~~---~iG~P~v~~~~V~a~V~~~~r~~Ki~v~K~krr 77 (100)
T 2zjr_O 1 MFAIIQTGGKQYRVSEGDVIRVESLQGEAGDKVELKALFVGGEQ---TVFGEDAGKYTVQAEVVEHGRGKKIYIRKYKSG 77 (100)
T ss_dssp ----CCSSCCSCCSCCEEEEECCSCCSSCCEEEECCSCEETTSC---EECSSTTTTSCEEEEEEECCBCCCEEEEEECSS
T ss_pred CEEEEEECCEEEEECCCCEEEEECCCCCCCCCEEEEEEEECCCC---EECCCCCCCCEEEEEEEEECCCCEEEEEEECCC
T ss_conf 98999979999999589999993567666882577664432541---020898765389999996258883999993398
Q ss_pred CCCEEECCCCCCCEEEEEEEEE
Q ss_conf 8716642745760099996761
Q gi|254780646|r 81 QNYRRTHGHRQEMTVVRITSIV 102 (103)
Q Consensus 81 K~yrr~~GhRq~~T~ikI~~I~ 102 (103)
|+|+|++||||+||+|+|++|.
T Consensus 78 k~~~r~~GhRq~~T~i~I~~I~ 99 (100)
T 2zjr_O 78 VQYRRRTGHRQNFTAIKILGIQ 99 (100)
T ss_dssp SCCEEEEEECCBEEEEECCCC-
T ss_pred CCCCCCCCCCCCCEEEEEEEEE
T ss_conf 8854787308880799998766
No 4
>>2j01_V 50S ribosomal protein L21; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} (V:1-66,V:94-101)
Probab=99.84 E-value=1.6e-22 Score=146.13 Aligned_cols=67 Identities=46% Similarity=0.604 Sum_probs=63.6
Q ss_pred CEEEEEECCEEEEECCCCEEEEECCCCCCCCCEEHHHEEEEECCCCCEECCCCCCCCEEEEEEEECCCC
Q ss_conf 967999998888976998999824467899721304214530688512267433786799999963456
Q gi|254780646|r 1 MFAIIEHGGKQSRVSATDTITVEKIVAKDGDNIRFDNVLAVGKDEHLSVGTPRVEGAYVEAEVVKQLRT 69 (103)
Q Consensus 1 MyAIi~~gGkQykV~~Gd~l~v~~l~~~~G~~i~l~~VL~~~~~~~~~iG~P~l~~a~V~a~V~~~~k~ 69 (103)
|||||++|||||||++||++.+|++++++|++++|++|||++ +.+.+|+|+++||+|+|+|++|.|-
T Consensus 1 MyAIIe~gGkQykV~~G~~i~v~~l~~~~G~~i~~~~VL~v~--~~~~iG~P~v~~a~V~A~Vl~h~R~ 67 (74)
T 2j01_V 1 MFAIVKTGGKQYRVEPGLKLRVEKLDAEPGATVELPVLLLGG--EKTVVGTPVVEGASVVAEVLGHGRL 67 (74)
T ss_dssp CCCEEEETTEEEECCSSCCCCCCCCSCCSSSCCBCCCCSCCC--SSTTCCCCCGGGCSSCCCCEECCCC
T ss_pred CEEEEEECCEEEEECCCCEEEEECCCCCCCCCEEEEEEEEEE--CCEECCCCCCCCCEEEEEEEEECCE
T ss_conf 989999799999993899999952367789618877768860--3023089767775899999995379
No 5
>>2j01_V 50S ribosomal protein L21; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} (V:67-93)
Probab=97.01 E-value=9.1e-05 Score=46.93 Aligned_cols=27 Identities=44% Similarity=0.648 Sum_probs=25.2
Q ss_pred CCCEEEEEECCCCCCEEECCCCCCCEE
Q ss_conf 673899996388871664274576009
Q gi|254780646|r 69 TKKVVVFKKRRRQNYRRTHGHRQEMTV 95 (103)
Q Consensus 69 ~~Ki~vfK~krRK~yrr~~GhRq~~T~ 95 (103)
|+||++-|||.+-.|||+.||||+||.
T Consensus 1 gkki~iskfkakvqyrrk~ghrqpyte 27 (27)
T 2j01_V 1 GKKILVSKFKAKVQYRRKKGHRQPYTE 27 (27)
T ss_dssp CCCCCCCCCCEECCCCEECCCCCCCCC
T ss_pred CCCEEEEEECCCCCCCCCCCCCCCEEE
T ss_conf 871899998375673057862688079
No 6
>>2wfw_A ARC; ATP-binding protein, proteasomal atpases, PAN, AAA, ATP-binding, nucleotide-binding; 1.60A {Rhodococcus erythropolis} PDB: 3fp9_A (A:1-66)
Probab=56.27 E-value=5.7 Score=20.15 Aligned_cols=39 Identities=15% Similarity=0.353 Sum_probs=29.8
Q ss_pred CEEEEEECCEEEEECCCCEEEEECCCCCCCCCEEHHHEEEE
Q ss_conf 96799999888897699899982446789972130421453
Q gi|254780646|r 1 MFAIIEHGGKQSRVSATDTITVEKIVAKDGDNIRFDNVLAV 41 (103)
Q Consensus 1 MyAIi~~gGkQykV~~Gd~l~v~~l~~~~G~~i~l~~VL~~ 41 (103)
.+|+|.++|.+|.|.....++.+. ..+|..+.|++=+.+
T Consensus 20 ~~aiV~s~G~~~~V~v~~~id~~~--L~pG~~V~Lnes~~i 58 (66)
T 2wfw_A 20 KTVDVFTSGRKMRLTCSPNIDTDT--LALGQTVRLNEALTI 58 (66)
T ss_dssp SCEEEEETTEEEEECBCTTCCGGG--CCTTCEEEECTTCCE
T ss_pred CEEEEEECCEEEEEECCCCCCHHH--CCCCCEEEECCCCEE
T ss_conf 869999899279997179979899--798899996883479
No 7
>>2ivw_A PILP pilot protein; lipoprotein, pilus biogenesis, secretin; NMR {Neisseria meningitidis} (A:)
Probab=46.07 E-value=19 Score=17.28 Aligned_cols=39 Identities=18% Similarity=0.280 Sum_probs=25.6
Q ss_pred CEEEEEECCEEEEECCCCEEEEE--CCCCCCCCCEEHHHEE
Q ss_conf 96799999888897699899982--4467899721304214
Q gi|254780646|r 1 MFAIIEHGGKQSRVSATDTITVE--KIVAKDGDNIRFDNVL 39 (103)
Q Consensus 1 MyAIi~~gGkQykV~~Gd~l~v~--~l~~~~G~~i~l~~VL 39 (103)
++|.|+..|+=|+|..|+.+=.+ ++..-..+.|.+.+.+
T Consensus 39 ~~ALV~pdG~v~~V~~G~yiG~n~G~V~~I~~~~I~i~E~v 79 (113)
T 2ivw_A 39 VSGFIEAEGYVYTVGVGNYLGQNYGRIESITDDSIVLNELI 79 (113)
T ss_dssp EEEEEEETTEEEEECSSEEETTTEEEEEEEETTEEEEEEEE
T ss_pred EEEEEECCCCEEEEEECCEECCCCCEEEEEECCEEEEEEEE
T ss_conf 89999489989997128883667879999958929999996
No 8
>>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 2.00A {Streptococcus pyogenes m1 gas} (A:)
Probab=40.39 E-value=28 Score=16.28 Aligned_cols=22 Identities=27% Similarity=0.220 Sum_probs=19.6
Q ss_pred EEEEECCEEEEECCCCEEEEEC
Q ss_conf 7999998888976998999824
Q gi|254780646|r 3 AIIEHGGKQSRVSATDTITVEK 24 (103)
Q Consensus 3 AIi~~gGkQykV~~Gd~l~v~~ 24 (103)
+.+.++|+++.+.+||.+.++.
T Consensus 71 ~~~~~~~~~~~l~~Gd~~~~p~ 92 (115)
T 1yhf_A 71 AEITIDQETYRVAEGQTIVXPA 92 (115)
T ss_dssp EEEEETTEEEEEETTCEEEECT
T ss_pred EEEEEEEEEEECCCCEEEECCC
T ss_conf 9999866999737748999789
No 9
>>2arc_A ARAC, arabinose operon regulatory protein; transcription factor, carbohydrate binding, coiled-coil, jelly roll; HET: ARA; 1.50A {Escherichia coli} (A:)
Probab=37.30 E-value=31 Score=16.00 Aligned_cols=23 Identities=9% Similarity=0.196 Sum_probs=20.2
Q ss_pred EEEEECCEEEEECCCCEEEEECC
Q ss_conf 79999988889769989998244
Q gi|254780646|r 3 AIIEHGGKQSRVSATDTITVEKI 25 (103)
Q Consensus 3 AIi~~gGkQykV~~Gd~l~v~~l 25 (103)
+.+.++|++|.+++||.+.++.-
T Consensus 49 ~~~~i~~~~~~l~~G~~~~i~p~ 71 (164)
T 2arc_A 49 GVVKNQGREFVCRPGDILLFPPG 71 (164)
T ss_dssp EEEEETTEEEEECTTCEEEECTT
T ss_pred EEEEECCEEEEECCCEEEEECCC
T ss_conf 99999999999679929999199
No 10
>>3d82_A Cupin 2, conserved barrel domain protein; YP_752209.1, domain of unknown function with A cupin fold, structural genomics; 2.05A {Shewanella frigidimarina ncimb 400} (A:)
Probab=35.07 E-value=28 Score=16.27 Aligned_cols=22 Identities=14% Similarity=0.172 Sum_probs=19.0
Q ss_pred EEEEECCEEEEECCCCEEEEEC
Q ss_conf 7999998888976998999824
Q gi|254780646|r 3 AIIEHGGKQSRVSATDTITVEK 24 (103)
Q Consensus 3 AIi~~gGkQykV~~Gd~l~v~~ 24 (103)
+.+.++|+++.+.+||.+.++.
T Consensus 61 ~~~~i~~~~~~l~~Gd~~~~p~ 82 (102)
T 3d82_A 61 LQIAFRDQNITLQAGEXYVIPK 82 (102)
T ss_dssp EEEECSSCEEEEETTEEEEECT
T ss_pred EEEEECCEEEECCCCCEEEECC
T ss_conf 9999987999924880999999
No 11
>>2pyt_A Ethanolamine utilization protein EUTQ; 16421009, structural genomics, joint center for structural genomics, JCSG; 1.90A {Salmonella typhimurium LT2} (A:)
Probab=32.39 E-value=38 Score=15.54 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=19.4
Q ss_pred EEEEECCEEEEECCCCEEEEEC
Q ss_conf 7999998888976998999824
Q gi|254780646|r 3 AIIEHGGKQSRVSATDTITVEK 24 (103)
Q Consensus 3 AIi~~gGkQykV~~Gd~l~v~~ 24 (103)
+-+..+|+.|.+.+||.+.++.
T Consensus 86 ~~v~~~~~~~~l~~Gd~i~ip~ 107 (133)
T 2pyt_A 86 LHVRHEGETXIAKAGDVXFIPK 107 (133)
T ss_dssp EEEEETTEEEEEETTCEEEECT
T ss_pred EEEEECCEEEEECCCCEEEECC
T ss_conf 9999899999975999999899
No 12
>>1v70_A Probable antibiotics synthesis protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.30A {Thermus thermophilus HB8} (A:)
Probab=32.19 E-value=38 Score=15.52 Aligned_cols=22 Identities=5% Similarity=0.126 Sum_probs=19.6
Q ss_pred EEEEECCEEEEECCCCEEEEEC
Q ss_conf 7999998888976998999824
Q gi|254780646|r 3 AIIEHGGKQSRVSATDTITVEK 24 (103)
Q Consensus 3 AIi~~gGkQykV~~Gd~l~v~~ 24 (103)
|.+..+|+.|.+++||.+.++.
T Consensus 60 ~~~~~~~~~~~l~~Gd~~~~p~ 81 (105)
T 1v70_A 60 VVVRVGEEEALLAPGMAAFAPA 81 (105)
T ss_dssp EEEEETTEEEEECTTCEEEECT
T ss_pred EEEEEEEEEEEECCEEEEEECC
T ss_conf 9999816679951127999479
No 13
>>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} (A:325-396)
Probab=29.47 E-value=12 Score=18.39 Aligned_cols=20 Identities=20% Similarity=0.197 Sum_probs=16.4
Q ss_pred EEECCEEEEECCCCEEEEEC
Q ss_conf 99998888976998999824
Q gi|254780646|r 5 IEHGGKQSRVSATDTITVEK 24 (103)
Q Consensus 5 i~~gGkQykV~~Gd~l~v~~ 24 (103)
+..-||+|.|+.||++.+..
T Consensus 44 ~r~eGKdYivqDGDIi~fkf 63 (72)
T 2ohf_A 44 YRQQGRNYIVEDGDIIFFKF 63 (72)
T ss_dssp CEEECTTCBCCTTCEEEEEE
T ss_pred CCCCCCCEEECCCCEEEEEE
T ss_conf 20258873763798899984
No 14
>>2ozj_A Cupin 2, conserved barrel; EAT53321.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense dcb-2} (A:)
Probab=28.78 E-value=44 Score=15.19 Aligned_cols=22 Identities=18% Similarity=0.326 Sum_probs=19.1
Q ss_pred EEEEECCEEEEECCCCEEEEEC
Q ss_conf 7999998888976998999824
Q gi|254780646|r 3 AIIEHGGKQSRVSATDTITVEK 24 (103)
Q Consensus 3 AIi~~gGkQykV~~Gd~l~v~~ 24 (103)
+.+..+|+.|.+.+||.+.++.
T Consensus 69 ~~~~~~~~~~~l~~Gd~~~i~~ 90 (114)
T 2ozj_A 69 AVITFDDQKIDLVPEDVLXVPA 90 (114)
T ss_dssp EEEEETTEEEEECTTCEEEECT
T ss_pred EEEEEEEEEEEECCCEEEEECC
T ss_conf 9999986899914768999459
No 15
>>2pfw_A Cupin 2, conserved barrel domain protein; YP_751781.1, cupin domain, structural genomics; 1.90A {Shewanella frigidimarina ncimb 400} (A:)
Probab=27.10 E-value=47 Score=15.01 Aligned_cols=22 Identities=18% Similarity=0.163 Sum_probs=19.4
Q ss_pred EEEEECCEEEEECCCCEEEEEC
Q ss_conf 7999998888976998999824
Q gi|254780646|r 3 AIIEHGGKQSRVSATDTITVEK 24 (103)
Q Consensus 3 AIi~~gGkQykV~~Gd~l~v~~ 24 (103)
+.+.++|+.|.+.+||.+.++-
T Consensus 65 ~~~~~~~~~~~l~~Gd~~~ip~ 86 (116)
T 2pfw_A 65 FHVNVDGVIKVLTAGDSFFVPP 86 (116)
T ss_dssp EEEEETTEEEEECTTCEEEECT
T ss_pred EEEEECCEEEECCCCEEEECCC
T ss_conf 9999899998647998999999
No 16
>>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.65A {Thermotoga maritima} (A:)
Probab=26.88 E-value=45 Score=15.11 Aligned_cols=22 Identities=18% Similarity=0.036 Sum_probs=17.6
Q ss_pred EEEEECCEEEEECCCCEEEEEC
Q ss_conf 7999998888976998999824
Q gi|254780646|r 3 AIIEHGGKQSRVSATDTITVEK 24 (103)
Q Consensus 3 AIi~~gGkQykV~~Gd~l~v~~ 24 (103)
+.+.++|+.+.+++||.+.++.
T Consensus 79 ~~~~~~~~~~~l~~Gd~~~~p~ 100 (126)
T 1vj2_A 79 LTVLKEQGEETVEEGFYIFVEP 100 (126)
T ss_dssp EEEECSSCEEEEETTEEEEECT
T ss_pred CEEEEEEEEEEECCCEEEEECC
T ss_conf 1289810005862447999999
No 17
>>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} (A:77-192)
Probab=23.63 E-value=55 Score=14.64 Aligned_cols=23 Identities=4% Similarity=-0.074 Sum_probs=19.9
Q ss_pred EEEEECCEEEEECCCCEEEEECC
Q ss_conf 79999988889769989998244
Q gi|254780646|r 3 AIIEHGGKQSRVSATDTITVEKI 25 (103)
Q Consensus 3 AIi~~gGkQykV~~Gd~l~v~~l 25 (103)
+.+.++|+.|.+++||.+.++.-
T Consensus 61 ~~~~~~~~~~~l~~Gd~i~~p~~ 83 (116)
T 1y9q_A 61 XKVFFDEQWHELQQGEHIRFFSD 83 (116)
T ss_dssp EEEEETTEEEEECTTCEEEEECS
T ss_pred EEEEECCEEEEECCCCEEEECCC
T ss_conf 99999999999789978998799
No 18
>>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae} (A:)
Probab=20.67 E-value=64 Score=14.29 Aligned_cols=22 Identities=5% Similarity=-0.068 Sum_probs=18.7
Q ss_pred EEEEECCEEEEECCCCEEEEEC
Q ss_conf 7999998888976998999824
Q gi|254780646|r 3 AIIEHGGKQSRVSATDTITVEK 24 (103)
Q Consensus 3 AIi~~gGkQykV~~Gd~l~v~~ 24 (103)
+.+..+|+.|.+.+||.+.++.
T Consensus 121 ~~~~~~~~~~~l~~Gd~i~~p~ 142 (166)
T 2vpv_A 121 VEVTVCKNKFLSVKGSTFQIPA 142 (166)
T ss_dssp EEEEETTEEEEEETTCEEEECT
T ss_pred EEEEECCEEEEECCCCEEEECC
T ss_conf 9999899999979998999889
No 19
>>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A (A:)
Probab=20.20 E-value=65 Score=14.23 Aligned_cols=23 Identities=17% Similarity=0.164 Sum_probs=19.9
Q ss_pred EEEEECCEEEEECCCCEEEEECC
Q ss_conf 79999988889769989998244
Q gi|254780646|r 3 AIIEHGGKQSRVSATDTITVEKI 25 (103)
Q Consensus 3 AIi~~gGkQykV~~Gd~l~v~~l 25 (103)
+.+..+|+.+.+.+||.+.++.-
T Consensus 55 ~~~~~~~~~~~l~~Gd~~~i~~~ 77 (113)
T 2gu9_A 55 GEAIVDGHTQALQAGSLIAIERG 77 (113)
T ss_dssp EEEEETTEEEEECTTEEEEECTT
T ss_pred EEEEEEEEEEECCCCEEEECCCC
T ss_conf 78998742000234505664799
No 20
>>1wpg_A Sarcoplasmic/endoplasmic reticulum calcium ATPase 1; membrane protein, P-type ATPase, HAD fold, hydrolase; HET: ADP TG1; 2.30A {Oryctolagus cuniculus} (A:1-21,A:119-227)
Probab=20.10 E-value=65 Score=14.22 Aligned_cols=36 Identities=22% Similarity=0.254 Sum_probs=20.9
Q ss_pred ECCCCEEEEECCCCCCCCCEEHHHEEEEECCCCCEECCCCC
Q ss_conf 76998999824467899721304214530688512267433
Q gi|254780646|r 14 VSATDTITVEKIVAKDGDNIRFDNVLAVGKDEHLSVGTPRV 54 (103)
Q Consensus 14 V~~Gd~l~v~~l~~~~G~~i~l~~VL~~~~~~~~~iG~P~l 54 (103)
+.+||++.+. +|+.|-.|=+|+-+......+....|
T Consensus 48 Lv~GDII~l~-----~Gd~IPaDg~il~~e~~~l~VDES~L 83 (130)
T 1wpg_A 48 IVPGDIVEVA-----VGDKVPADIRILSIKSTTLRVDQSIL 83 (130)
T ss_dssp CCTTCEEEEE-----TTCBCCSEEEEEEECSSCCEEECHHH
T ss_pred CCCCCEEEEC-----CCCEEEEEEEEEEEEECCEEEECCCC
T ss_conf 8808589999-----98999623899997206848887625
Done!