HHSEARCH alignment of GI: 254780646 and SCOP domain: d2j01v1

Alignment
>d2j01v1 b.155.1.1 (V:1-101) Ribosomal protein L21p {Thermus thermophilus [TaxId: 274]}
Probab=100.00  E-value=3.4e-40  Score=242.55  Aligned_cols=100  Identities=45%  Similarity=0.615  Sum_probs=94.5

Q ss_pred             CEEEEEECCEEEEECCCCEEEEECCCCCCCCCEEHHHEEEEECCCCCEECCCCCCCCEEEEEEEECCCCCCEEEEEECCC
Q ss_conf             96799999888897699899982446789972130421453068851226743378679999996345673899996388
Q gi|254780646|r    1 MFAIIEHGGKQSRVSATDTITVEKIVAKDGDNIRFDNVLAVGKDEHLSVGTPRVEGAYVEAEVVKQLRTKKVVVFKKRRR   80 (103)
Q Consensus         1 MyAIi~~gGkQykV~~Gd~l~v~~l~~~~G~~i~l~~VL~~~~~~~~~iG~P~l~~a~V~a~V~~~~k~~Ki~vfK~krR   80 (103)
                      |||||++||+||||++||+|.||++++++|+.++|+.+|+ + ++++.+|+|+|+||+|+|+|++|.||+|+++||||||
T Consensus         1 MyAVi~~gGkQykV~~Gd~l~v~~l~~~~g~~v~~~~ll~-~-~~~~~iG~P~l~~a~V~a~V~~~~k~~Kv~vfK~krR   78 (101)
T d2j01v1           1 MFAIVKTGGKQYRVEPGLKLRVEKLDAEPGATVELPVLLL-G-GEKTVVGTPVVEGASVVAEVLGHGRGKKILVSKFKAK   78 (101)
T ss_dssp             CCCEEEETTEEEECCSSCCCCCCCCSCCSSSCCBCCCCSC-C-CSSTTCCCCCGGGCSSCCCCEECCCCCCCCCCCCCEE
T ss_pred             CEEEEEECCEEEEECCCCEEEEECCCCCCCCCEEEEEEEE-C-CCCEEECCCCCCCCEEEEEEEEECCCCCEEEEEECCC
T ss_conf             9899997999999938999999423677896178989998-2-8802608865577489999997528871899998286


Q ss_pred             CCCEEECCCCCCCEEEEEEEEE
Q ss_conf             8716642745760099996761
Q gi|254780646|r   81 QNYRRTHGHRQEMTVVRITSIV  102 (103)
Q Consensus        81 K~yrr~~GhRq~~T~ikI~~I~  102 (103)
                      |||+|++||||+||+|+|++|.
T Consensus        79 K~y~R~~GHRQ~~T~l~I~~I~  100 (101)
T d2j01v1          79 VQYRRKKGHRQPYTELLIKEIR  100 (101)
T ss_dssp             CCCCEECCCCCCCCCCCCEECC
T ss_pred             CCCCCCCCCCCCEEEEEEEEEE
T ss_conf             7730578525880799998765


SCOP domain information

class: All beta proteins
fold: L21p-like
superfamily: L21p-like
family: Ribosomal protein L21p
domain: Ribosomal protein L21p
species: Thermus thermophilus [TaxId: 274]