Query gi|254780646|ref|YP_003065059.1| 50S ribosomal protein L21 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 103
No_of_seqs 103 out of 1616
Neff 5.4
Searched_HMMs 13730
Date Wed Jun 1 10:10:02 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780646.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2qamr1 b.155.1.1 (R:1-103) Ri 100.0 5.7E-43 0 258.0 4.6 103 1-103 1-103 (103)
2 d2j01v1 b.155.1.1 (V:1-101) Ri 100.0 3.4E-40 2.5E-44 242.6 -0.6 100 1-102 1-100 (101)
3 d2zjro1 b.155.1.1 (O:5-98) Rib 100.0 1.7E-35 1.3E-39 216.3 5.3 94 5-101 1-94 (94)
4 d1sfna_ b.82.1.11 (A:) Hypothe 34.7 14 0.001 15.8 3.8 22 3-24 79-100 (245)
5 d2arca_ b.82.4.1 (A:) Regulato 34.2 14 0.001 15.7 4.0 23 3-25 49-71 (161)
6 d1rc6a_ b.82.1.11 (A:) Hypothe 29.8 16 0.0012 15.4 2.5 23 3-25 84-106 (253)
7 d1wpga1 b.82.7.1 (A:125-239) C 27.5 16 0.0011 15.5 2.1 38 14-56 21-58 (115)
8 d1sq4a_ b.82.1.11 (A:) Glyoxyl 23.8 22 0.0016 14.7 3.9 22 3-24 99-120 (273)
9 d1y9qa2 b.82.1.15 (A:83-181) P 21.9 24 0.0018 14.4 4.2 22 3-24 55-76 (99)
10 d1sefa_ b.82.1.11 (A:) Hypothe 21.9 24 0.0018 14.4 3.8 22 3-24 81-102 (250)
11 d2b8ma1 b.82.1.18 (A:1-108) Hy 21.7 25 0.0018 14.4 2.8 46 3-50 57-107 (108)
No 1
>d2qamr1 b.155.1.1 (R:1-103) Ribosomal protein L21p {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=5.7e-43 Score=258.02 Aligned_cols=103 Identities=42% Similarity=0.700 Sum_probs=101.7
Q ss_pred CEEEEEECCEEEEECCCCEEEEECCCCCCCCCEEHHHEEEEECCCCCEECCCCCCCCEEEEEEEECCCCCCEEEEEECCC
Q ss_conf 96799999888897699899982446789972130421453068851226743378679999996345673899996388
Q gi|254780646|r 1 MFAIIEHGGKQSRVSATDTITVEKIVAKDGDNIRFDNVLAVGKDEHLSVGTPRVEGAYVEAEVVKQLRTKKVVVFKKRRR 80 (103)
Q Consensus 1 MyAIi~~gGkQykV~~Gd~l~v~~l~~~~G~~i~l~~VL~~~~~~~~~iG~P~l~~a~V~a~V~~~~k~~Ki~vfK~krR 80 (103)
|||||++||+||||++||+|.+|++++++||+++|++|||+++++++.+|+|+|+||+|+|+|++|.+|+|+++||||||
T Consensus 1 MyAIi~~gGkQykV~~Gd~i~v~~l~~~~G~~i~~~~VLlv~~~~~~~iG~P~l~~a~V~a~V~~~~k~~Ki~vfK~krr 80 (103)
T d2qamr1 1 MYAVFQSGGKQHRVSEGQTVRLEKLDIATGETVEFAEVLMIANGEEVKIGVPFVDGGVIKAEVVAHGRGEKVKIVKFRRR 80 (103)
T ss_dssp CCCCCCSSSSCCCCCSSCCEEESCCCCCTTCEEEECCCSCCCSSSCCCCSSSSCSSCCEEEEEEEEECCCCEEEEEECTT
T ss_pred CEEEEEECCEEEEECCCCEEEEECCCCCCCCCEEEHHHEECCCCCCEEECCCCCCCCEEEEEEEEECCCCCEEEEEECCC
T ss_conf 98999979999999389999996467788871880462482789827808975236289999953047760899996387
Q ss_pred CCCEEECCCCCCCEEEEEEEEEC
Q ss_conf 87166427457600999967619
Q gi|254780646|r 81 QNYRRTHGHRQEMTVVRITSIVT 103 (103)
Q Consensus 81 K~yrr~~GhRq~~T~ikI~~I~s 103 (103)
|+|+|++||||+||+|+|++|.+
T Consensus 81 k~yrr~~GHRQ~~T~i~I~~I~a 103 (103)
T d2qamr1 81 KHYRKQQGHRQWFTDVKITGISA 103 (103)
T ss_dssp SSCEEEEEECCCEEEECCCCCCC
T ss_pred CCCCCCCCCCCCEEEEEEEEEEC
T ss_conf 76324685448728999988869
No 2
>d2j01v1 b.155.1.1 (V:1-101) Ribosomal protein L21p {Thermus thermophilus [TaxId: 274]}
Probab=100.00 E-value=3.4e-40 Score=242.55 Aligned_cols=100 Identities=45% Similarity=0.615 Sum_probs=94.5
Q ss_pred CEEEEEECCEEEEECCCCEEEEECCCCCCCCCEEHHHEEEEECCCCCEECCCCCCCCEEEEEEEECCCCCCEEEEEECCC
Q ss_conf 96799999888897699899982446789972130421453068851226743378679999996345673899996388
Q gi|254780646|r 1 MFAIIEHGGKQSRVSATDTITVEKIVAKDGDNIRFDNVLAVGKDEHLSVGTPRVEGAYVEAEVVKQLRTKKVVVFKKRRR 80 (103)
Q Consensus 1 MyAIi~~gGkQykV~~Gd~l~v~~l~~~~G~~i~l~~VL~~~~~~~~~iG~P~l~~a~V~a~V~~~~k~~Ki~vfK~krR 80 (103)
|||||++||+||||++||+|.||++++++|+.++|+.+|+ + ++++.+|+|+|+||+|+|+|++|.||+|+++||||||
T Consensus 1 MyAVi~~gGkQykV~~Gd~l~v~~l~~~~g~~v~~~~ll~-~-~~~~~iG~P~l~~a~V~a~V~~~~k~~Kv~vfK~krR 78 (101)
T d2j01v1 1 MFAIVKTGGKQYRVEPGLKLRVEKLDAEPGATVELPVLLL-G-GEKTVVGTPVVEGASVVAEVLGHGRGKKILVSKFKAK 78 (101)
T ss_dssp CCCEEEETTEEEECCSSCCCCCCCCSCCSSSCCBCCCCSC-C-CSSTTCCCCCGGGCSSCCCCEECCCCCCCCCCCCCEE
T ss_pred CEEEEEECCEEEEECCCCEEEEECCCCCCCCCEEEEEEEE-C-CCCEEECCCCCCCCEEEEEEEEECCCCCEEEEEECCC
T ss_conf 9899997999999938999999423677896178989998-2-8802608865577489999997528871899998286
Q ss_pred CCCEEECCCCCCCEEEEEEEEE
Q ss_conf 8716642745760099996761
Q gi|254780646|r 81 QNYRRTHGHRQEMTVVRITSIV 102 (103)
Q Consensus 81 K~yrr~~GhRq~~T~ikI~~I~ 102 (103)
|||+|++||||+||+|+|++|.
T Consensus 79 K~y~R~~GHRQ~~T~l~I~~I~ 100 (101)
T d2j01v1 79 VQYRRKKGHRQPYTELLIKEIR 100 (101)
T ss_dssp CCCCEECCCCCCCCCCCCEECC
T ss_pred CCCCCCCCCCCCEEEEEEEEEE
T ss_conf 7730578525880799998765
No 3
>d2zjro1 b.155.1.1 (O:5-98) Ribosomal protein L21p {Deinococcus radiodurans [TaxId: 1299]}
Probab=100.00 E-value=1.7e-35 Score=216.27 Aligned_cols=94 Identities=36% Similarity=0.506 Sum_probs=86.3
Q ss_pred EEECCEEEEECCCCEEEEECCCCCCCCCEEHHHEEEEECCCCCEECCCCCCCCEEEEEEEECCCCCCEEEEEECCCCCCE
Q ss_conf 99998888976998999824467899721304214530688512267433786799999963456738999963888716
Q gi|254780646|r 5 IEHGGKQSRVSATDTITVEKIVAKDGDNIRFDNVLAVGKDEHLSVGTPRVEGAYVEAEVVKQLRTKKVVVFKKRRRQNYR 84 (103)
Q Consensus 5 i~~gGkQykV~~Gd~l~v~~l~~~~G~~i~l~~VL~~~~~~~~~iG~P~l~~a~V~a~V~~~~k~~Ki~vfK~krRK~yr 84 (103)
|++||+||||++||.|.||++++++||.++|+.||+. ++.+. |.|.+++|+|+|+|++|.+|+|+++|||||||+|+
T Consensus 1 I~tGGKQykV~~Gd~i~vekl~~~~G~~i~~~~vl~~--g~~~~-~g~~l~~a~V~a~V~~~~r~~Ki~vfK~krrK~yr 77 (94)
T d2zjro1 1 IQTGGKQYRVSEGDVIRVESLQGEAGDKVELKALFVG--GEQTV-FGEDAGKYTVQAEVVEHGRGKKIYIRKYKSGVQYR 77 (94)
T ss_dssp CCSSCCSCCSCCEEEEECCSCCSSCCEEEECCSCEET--TSCEE-CSSTTTTSCEEEEEEECCBCCCEEEEEECSSSCCE
T ss_pred CCCCCEEEEECCCCEEEEECCCCCCCCCEEEEEEEEC--CCCCC-CCCCCCEEEEEEEEEEECCCCCEEEEEECCCCCCC
T ss_conf 9518999999499999994336766871587356871--55310-28887426999999875368721899972877741
Q ss_pred EECCCCCCCEEEEEEEE
Q ss_conf 64274576009999676
Q gi|254780646|r 85 RTHGHRQEMTVVRITSI 101 (103)
Q Consensus 85 r~~GhRq~~T~ikI~~I 101 (103)
|++||||+||+|+|++|
T Consensus 78 Rk~GHRQ~~T~vkI~~I 94 (94)
T d2zjro1 78 RRTGHRQNFTAIKILGI 94 (94)
T ss_dssp EEEEECCBEEEEECCCC
T ss_pred CCCCCCCCCEEEEEEEC
T ss_conf 56871577079999779
No 4
>d1sfna_ b.82.1.11 (A:) Hypothetical protein DR1152 {Deinococcus radiodurans [TaxId: 1299]}
Probab=34.74 E-value=14 Score=15.76 Aligned_cols=22 Identities=14% Similarity=0.244 Sum_probs=17.6
Q ss_pred EEEEECCEEEEECCCCEEEEEC
Q ss_conf 7999998888976998999824
Q gi|254780646|r 3 AIIEHGGKQSRVSATDTITVEK 24 (103)
Q Consensus 3 AIi~~gGkQykV~~Gd~l~v~~ 24 (103)
+.+..+|+.|.+.+||.+.++-
T Consensus 79 ~~~~~~g~~~~l~~G~~~~~P~ 100 (245)
T d1sfna_ 79 VDVAVGGETRTLREYDYVYLPA 100 (245)
T ss_dssp EEEECSSCEEEECTTEEEEECT
T ss_pred EEEEECCEEEEECCCCEEEECC
T ss_conf 9999999999942899899589
No 5
>d2arca_ b.82.4.1 (A:) Regulatory protein AraC {Escherichia coli [TaxId: 562]}
Probab=34.19 E-value=14 Score=15.71 Aligned_cols=23 Identities=9% Similarity=0.196 Sum_probs=20.1
Q ss_pred EEEEECCEEEEECCCCEEEEECC
Q ss_conf 79999988889769989998244
Q gi|254780646|r 3 AIIEHGGKQSRVSATDTITVEKI 25 (103)
Q Consensus 3 AIi~~gGkQykV~~Gd~l~v~~l 25 (103)
+.+.++|++|-+++||.+.++.-
T Consensus 49 G~~~i~~~~y~l~~Gdl~li~P~ 71 (161)
T d2arca_ 49 GVVKNQGREFVCRPGDILLFPPG 71 (161)
T ss_dssp EEEEETTEEEEECTTCEEEECTT
T ss_pred EEEEECCEEEEECCCEEEEECCC
T ss_conf 99999999999569959999299
No 6
>d1rc6a_ b.82.1.11 (A:) Hypothetical protein YlbA {Escherichia coli [TaxId: 562]}
Probab=29.81 E-value=16 Score=15.42 Aligned_cols=23 Identities=13% Similarity=0.005 Sum_probs=19.4
Q ss_pred EEEEECCEEEEECCCCEEEEECC
Q ss_conf 79999988889769989998244
Q gi|254780646|r 3 AIIEHGGKQSRVSATDTITVEKI 25 (103)
Q Consensus 3 AIi~~gGkQykV~~Gd~l~v~~l 25 (103)
+.+.++|+.|.+.+||.+.++.-
T Consensus 84 ~~~~~~~~~~~l~~Gd~~~~p~~ 106 (253)
T d1rc6a_ 84 ITAKAEGKTFALSEGGYLYCPPG 106 (253)
T ss_dssp EEEEETTEEEEEETTEEEEECTT
T ss_pred EEEEECCEEEEECCCCEEEECCC
T ss_conf 99999999999878999997799
No 7
>d1wpga1 b.82.7.1 (A:125-239) Calcium ATPase, transduction domain A {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=27.49 E-value=16 Score=15.51 Aligned_cols=38 Identities=24% Similarity=0.295 Sum_probs=24.1
Q ss_pred ECCCCEEEEECCCCCCCCCEEHHHEEEEECCCCCEECCCCCCC
Q ss_conf 7699899982446789972130421453068851226743378
Q gi|254780646|r 14 VSATDTITVEKIVAKDGDNIRFDNVLAVGKDEHLSVGTPRVEG 56 (103)
Q Consensus 14 V~~Gd~l~v~~l~~~~G~~i~l~~VL~~~~~~~~~iG~P~l~~ 56 (103)
+.+||++.+ ..|+.+-.|-+|+.+......+....|.|
T Consensus 21 Lv~GDiv~l-----~~G~~vPaD~~ll~~~~~~l~vdes~lTG 58 (115)
T d1wpga1 21 IVPGDIVEV-----AVGDKVPADIRILSIKSTTLRVDQSILTG 58 (115)
T ss_dssp CCTTCEEEE-----ETTCBCCSEEEEEEECSSCCEEECHHHHS
T ss_pred CCCCCEEEE-----CCCCEEEECEEEEEEECCCEEEEEEECCC
T ss_conf 889989999-----99999951569999612626898720003
No 8
>d1sq4a_ b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=23.79 E-value=22 Score=14.66 Aligned_cols=22 Identities=5% Similarity=0.015 Sum_probs=18.5
Q ss_pred EEEEECCEEEEECCCCEEEEEC
Q ss_conf 7999998888976998999824
Q gi|254780646|r 3 AIIEHGGKQSRVSATDTITVEK 24 (103)
Q Consensus 3 AIi~~gGkQykV~~Gd~l~v~~ 24 (103)
+.+.++|+.+.+.+||.+.++-
T Consensus 99 ~~l~~~g~~~~L~~Gd~~y~P~ 120 (273)
T d1sq4a_ 99 LSLTLQGQVHAMQPGGYAFIPP 120 (273)
T ss_dssp EEEEESSCEEEECTTEEEEECT
T ss_pred EEEEECCEEEEECCCCEEEECC
T ss_conf 9999999999956998999799
No 9
>d1y9qa2 b.82.1.15 (A:83-181) Probable transcriptional regulator VC1968, C-terminal domain {Vibrio cholerae [TaxId: 666]}
Probab=21.88 E-value=24 Score=14.44 Aligned_cols=22 Identities=5% Similarity=-0.031 Sum_probs=17.7
Q ss_pred EEEEECCEEEEECCCCEEEEEC
Q ss_conf 7999998888976998999824
Q gi|254780646|r 3 AIIEHGGKQSRVSATDTITVEK 24 (103)
Q Consensus 3 AIi~~gGkQykV~~Gd~l~v~~ 24 (103)
+.+.++|+.|.+.+||.+.++-
T Consensus 55 ~~~~~~~~~~~l~~GD~~~~~~ 76 (99)
T d1y9qa2 55 MKVFFDEQWHELQQGEHIRFFS 76 (99)
T ss_dssp EEEEETTEEEEECTTCEEEEEC
T ss_pred EEEEECCEEEEECCCCEEEECC
T ss_conf 6998322388703898999879
No 10
>d1sefa_ b.82.1.11 (A:) Hypothetical protein EF2996 {Enterococcus faecalis [TaxId: 1351]}
Probab=21.86 E-value=24 Score=14.44 Aligned_cols=22 Identities=9% Similarity=0.083 Sum_probs=18.1
Q ss_pred EEEEECCEEEEECCCCEEEEEC
Q ss_conf 7999998888976998999824
Q gi|254780646|r 3 AIIEHGGKQSRVSATDTITVEK 24 (103)
Q Consensus 3 AIi~~gGkQykV~~Gd~l~v~~ 24 (103)
+.+.++|+.|.+.+||.+.++.
T Consensus 81 ~~~~~~~~~~~l~~Gd~~~~p~ 102 (250)
T d1sefa_ 81 LRVSDGQETHELEAGGYAYFTP 102 (250)
T ss_dssp EEEECSSCEEEEETTEEEEECT
T ss_pred EEEEECCEEEEECCCCEEEECC
T ss_conf 9999999998876998999939
No 11
>d2b8ma1 b.82.1.18 (A:1-108) Hypothetical protein MJ0764 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=21.70 E-value=25 Score=14.42 Aligned_cols=46 Identities=7% Similarity=0.063 Sum_probs=26.6
Q ss_pred EEEEECCE-EEEECCCCEEEEECC--C-C-CCCCCEEHHHEEEEECCCCCEEC
Q ss_conf 79999988-889769989998244--6-7-89972130421453068851226
Q gi|254780646|r 3 AIIEHGGK-QSRVSATDTITVEKI--V-A-KDGDNIRFDNVLAVGKDEHLSVG 50 (103)
Q Consensus 3 AIi~~gGk-QykV~~Gd~l~v~~l--~-~-~~G~~i~l~~VL~~~~~~~~~iG 50 (103)
|.+..+|+ .+.+.+||.+.++.- . . ..|+.. + .+|++.+..-..+|
T Consensus 57 ~~~~v~~~e~~~v~~Gd~i~ip~~~~H~~~n~~~e~-l-~~l~v~~P~p~~~~ 107 (108)
T d2b8ma1 57 MTLTLEDQEPHNYKEGNIVYVPFNVKMLIQNINSDI-L-EFFVVKAPHPKKLN 107 (108)
T ss_dssp EEEEETTSCCEEEETTCEEEECTTCEEEEECCSSSE-E-EEEEEECSCGGGGC
T ss_pred EEEEEECCCEEEEECCEEEECCCCCEEEEECCCCCC-E-EEEEEECCCCCCCC
T ss_conf 999993220899604358640477359999199986-9-99999898984489
Done!