RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780646|ref|YP_003065059.1| 50S ribosomal protein L21
[Candidatus Liberibacter asiaticus str. psy62]
         (103 letters)



>gnl|CDD|144428 pfam00829, Ribosomal_L21p, Ribosomal prokaryotic L21 protein. 
          Length = 96

 Score =  117 bits (295), Expect = 9e-28
 Identities = 54/96 (56%), Positives = 67/96 (69%)

Query: 1  MFAIIEHGGKQSRVSATDTITVEKIVAKDGDNIRFDNVLAVGKDEHLSVGTPRVEGAYVE 60
          M+AIIE GGKQ +V   D I VEK+ A+ GD I FD VL VG D  + +G P VEGA V+
Sbjct: 1  MYAIIETGGKQYKVEEGDVIFVEKLDAEVGDKIEFDKVLLVGGDGKVKIGKPYVEGAKVK 60

Query: 61 AEVVKQLRTKKVVVFKKRRRQNYRRTHGHRQEMTVV 96
          AEV++  R KKV+VFK +RR+NYR+  GHRQ  T V
Sbjct: 61 AEVLEHGRGKKVIVFKYKRRKNYRKKQGHRQPYTRV 96


>gnl|CDD|30610 COG0261, RplU, Ribosomal protein L21 [Translation, ribosomal
           structure and biogenesis].
          Length = 103

 Score =  112 bits (281), Expect = 2e-26
 Identities = 56/102 (54%), Positives = 71/102 (69%)

Query: 1   MFAIIEHGGKQSRVSATDTITVEKIVAKDGDNIRFDNVLAVGKDEHLSVGTPRVEGAYVE 60
           M+AII+ GGKQ +V   D I VEK+ A+ GD + FD VL VG  E + +G P VEGA V 
Sbjct: 1   MYAIIKTGGKQYKVEEGDVIKVEKLDAEPGDKVEFDEVLMVGGGEEVKIGAPYVEGAKVT 60

Query: 61  AEVVKQLRTKKVVVFKKRRRQNYRRTHGHRQEMTVVRITSIV 102
           AEVV+  R KKV++FK +RR+NYR+  GHRQ  T V+IT IV
Sbjct: 61  AEVVEHGRGKKVIIFKYKRRKNYRKKQGHRQPYTRVKITGIV 102


>gnl|CDD|177014 CHL00075, rpl21, ribosomal protein L21.
          Length = 108

 Score = 73.8 bits (182), Expect = 1e-14
 Identities = 33/100 (33%), Positives = 52/100 (52%)

Query: 2   FAIIEHGGKQSRVSATDTITVEKIVAKDGDNIRFDNVLAVGKDEHLSVGTPRVEGAYVEA 61
           +AIIE GGKQ  V       +     + G  I  + VL +  +  + +G P +E A V+ 
Sbjct: 4   YAIIEAGGKQLWVEPGRFYDINHFPLEPGTKILLNRVLLIRNESEILIGKPWLENATVKG 63

Query: 62  EVVKQLRTKKVVVFKKRRRQNYRRTHGHRQEMTVVRITSI 101
            ++   R KK+ V+K R ++  R+  GHRQ++T   I SI
Sbjct: 64  RILHHFRGKKITVYKMRPKKKTRKKQGHRQKLTRFLIDSI 103


>gnl|CDD|36899 KOG1686, KOG1686, KOG1686, Mitochondrial/chloroplast ribosomal L21
           protein [Translation, ribosomal structure and
           biogenesis].
          Length = 151

 Score = 72.7 bits (178), Expect = 2e-14
 Identities = 41/102 (40%), Positives = 56/102 (54%), Gaps = 1/102 (0%)

Query: 1   MFAIIEHGGKQSRVSATDTITVEKIVAKD-GDNIRFDNVLAVGKDEHLSVGTPRVEGAYV 59
            FA++  G +Q +VS+ DTI  E +  K+  D+I    VL VG  E   +G P V+   V
Sbjct: 26  GFAVVSVGSRQRKVSSGDTIYTEGLKPKNVLDSIPLPKVLLVGPVEETRIGRPVVKKVTV 85

Query: 60  EAEVVKQLRTKKVVVFKKRRRQNYRRTHGHRQEMTVVRITSI 101
            A V +     KVV FK ++ +  RR  GHRQE T +RIT I
Sbjct: 86  HAVVEEYGLLFKVVHFKSKQWKVTRRDLGHRQEATELRITCI 127


>gnl|CDD|112952 pfam04162, Gyro_capsid, Gyrovirus capsid protein (VP1).
          Gyroviruses are small circular single stranded viruses.
          This family includes the VP1 protein from the chicken
          anaemia virus which is the viral capsid protein.
          Length = 449

 Score = 24.7 bits (53), Expect = 5.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)

Query: 68 RTKKVVVFKKRRRQNYRR 85
          R ++   F+ RRRQ YRR
Sbjct: 25 RLRRRYKFRHRRRQRYRR 42


>gnl|CDD|30857 COG0511, AccB, Biotin carboxyl carrier protein [Lipid metabolism].
          Length = 140

 Score = 23.9 bits (51), Expect = 9.6
 Identities = 13/39 (33%), Positives = 23/39 (58%)

Query: 3   AIIEHGGKQSRVSATDTITVEKIVAKDGDNIRFDNVLAV 41
           AIIE    ++ + A     V++I+ K+GD + + + LAV
Sbjct: 99  AIIEAMKMENEIEAPADGVVKEILVKNGDPVEYGDPLAV 137


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.320    0.133    0.363 

Gapped
Lambda     K      H
   0.267   0.0523    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,126,503
Number of extensions: 51027
Number of successful extensions: 114
Number of sequences better than 10.0: 1
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 12
Length of query: 103
Length of database: 6,263,737
Length adjustment: 70
Effective length of query: 33
Effective length of database: 4,751,107
Effective search space: 156786531
Effective search space used: 156786531
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.9 bits)