RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780646|ref|YP_003065059.1| 50S ribosomal protein L21 [Candidatus Liberibacter asiaticus str. psy62] (103 letters) >gnl|CDD|144428 pfam00829, Ribosomal_L21p, Ribosomal prokaryotic L21 protein. Length = 96 Score = 117 bits (295), Expect = 9e-28 Identities = 54/96 (56%), Positives = 67/96 (69%) Query: 1 MFAIIEHGGKQSRVSATDTITVEKIVAKDGDNIRFDNVLAVGKDEHLSVGTPRVEGAYVE 60 M+AIIE GGKQ +V D I VEK+ A+ GD I FD VL VG D + +G P VEGA V+ Sbjct: 1 MYAIIETGGKQYKVEEGDVIFVEKLDAEVGDKIEFDKVLLVGGDGKVKIGKPYVEGAKVK 60 Query: 61 AEVVKQLRTKKVVVFKKRRRQNYRRTHGHRQEMTVV 96 AEV++ R KKV+VFK +RR+NYR+ GHRQ T V Sbjct: 61 AEVLEHGRGKKVIVFKYKRRKNYRKKQGHRQPYTRV 96 >gnl|CDD|30610 COG0261, RplU, Ribosomal protein L21 [Translation, ribosomal structure and biogenesis]. Length = 103 Score = 112 bits (281), Expect = 2e-26 Identities = 56/102 (54%), Positives = 71/102 (69%) Query: 1 MFAIIEHGGKQSRVSATDTITVEKIVAKDGDNIRFDNVLAVGKDEHLSVGTPRVEGAYVE 60 M+AII+ GGKQ +V D I VEK+ A+ GD + FD VL VG E + +G P VEGA V Sbjct: 1 MYAIIKTGGKQYKVEEGDVIKVEKLDAEPGDKVEFDEVLMVGGGEEVKIGAPYVEGAKVT 60 Query: 61 AEVVKQLRTKKVVVFKKRRRQNYRRTHGHRQEMTVVRITSIV 102 AEVV+ R KKV++FK +RR+NYR+ GHRQ T V+IT IV Sbjct: 61 AEVVEHGRGKKVIIFKYKRRKNYRKKQGHRQPYTRVKITGIV 102 >gnl|CDD|177014 CHL00075, rpl21, ribosomal protein L21. Length = 108 Score = 73.8 bits (182), Expect = 1e-14 Identities = 33/100 (33%), Positives = 52/100 (52%) Query: 2 FAIIEHGGKQSRVSATDTITVEKIVAKDGDNIRFDNVLAVGKDEHLSVGTPRVEGAYVEA 61 +AIIE GGKQ V + + G I + VL + + + +G P +E A V+ Sbjct: 4 YAIIEAGGKQLWVEPGRFYDINHFPLEPGTKILLNRVLLIRNESEILIGKPWLENATVKG 63 Query: 62 EVVKQLRTKKVVVFKKRRRQNYRRTHGHRQEMTVVRITSI 101 ++ R KK+ V+K R ++ R+ GHRQ++T I SI Sbjct: 64 RILHHFRGKKITVYKMRPKKKTRKKQGHRQKLTRFLIDSI 103 >gnl|CDD|36899 KOG1686, KOG1686, KOG1686, Mitochondrial/chloroplast ribosomal L21 protein [Translation, ribosomal structure and biogenesis]. Length = 151 Score = 72.7 bits (178), Expect = 2e-14 Identities = 41/102 (40%), Positives = 56/102 (54%), Gaps = 1/102 (0%) Query: 1 MFAIIEHGGKQSRVSATDTITVEKIVAKD-GDNIRFDNVLAVGKDEHLSVGTPRVEGAYV 59 FA++ G +Q +VS+ DTI E + K+ D+I VL VG E +G P V+ V Sbjct: 26 GFAVVSVGSRQRKVSSGDTIYTEGLKPKNVLDSIPLPKVLLVGPVEETRIGRPVVKKVTV 85 Query: 60 EAEVVKQLRTKKVVVFKKRRRQNYRRTHGHRQEMTVVRITSI 101 A V + KVV FK ++ + RR GHRQE T +RIT I Sbjct: 86 HAVVEEYGLLFKVVHFKSKQWKVTRRDLGHRQEATELRITCI 127 >gnl|CDD|112952 pfam04162, Gyro_capsid, Gyrovirus capsid protein (VP1). Gyroviruses are small circular single stranded viruses. This family includes the VP1 protein from the chicken anaemia virus which is the viral capsid protein. Length = 449 Score = 24.7 bits (53), Expect = 5.0 Identities = 9/18 (50%), Positives = 12/18 (66%) Query: 68 RTKKVVVFKKRRRQNYRR 85 R ++ F+ RRRQ YRR Sbjct: 25 RLRRRYKFRHRRRQRYRR 42 >gnl|CDD|30857 COG0511, AccB, Biotin carboxyl carrier protein [Lipid metabolism]. Length = 140 Score = 23.9 bits (51), Expect = 9.6 Identities = 13/39 (33%), Positives = 23/39 (58%) Query: 3 AIIEHGGKQSRVSATDTITVEKIVAKDGDNIRFDNVLAV 41 AIIE ++ + A V++I+ K+GD + + + LAV Sbjct: 99 AIIEAMKMENEIEAPADGVVKEILVKNGDPVEYGDPLAV 137 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.320 0.133 0.363 Gapped Lambda K H 0.267 0.0523 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 1,126,503 Number of extensions: 51027 Number of successful extensions: 114 Number of sequences better than 10.0: 1 Number of HSP's gapped: 112 Number of HSP's successfully gapped: 12 Length of query: 103 Length of database: 6,263,737 Length adjustment: 70 Effective length of query: 33 Effective length of database: 4,751,107 Effective search space: 156786531 Effective search space used: 156786531 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 51 (23.9 bits)