RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780646|ref|YP_003065059.1| 50S ribosomal protein L21 [Candidatus Liberibacter asiaticus str. psy62] (103 letters) >gnl|CDD|180138 PRK05573, rplU, 50S ribosomal protein L21; Validated. Length = 103 Score = 136 bits (346), Expect = 9e-34 Identities = 57/102 (55%), Positives = 71/102 (69%) Query: 1 MFAIIEHGGKQSRVSATDTITVEKIVAKDGDNIRFDNVLAVGKDEHLSVGTPRVEGAYVE 60 M+AII+ GGKQ +V D I VEK+ A+ GD + FD VL VG E + +G P VEGA V Sbjct: 1 MYAIIKTGGKQYKVEEGDVIKVEKLDAEVGDTVEFDEVLLVGGGEEVKIGAPYVEGAKVT 60 Query: 61 AEVVKQLRTKKVVVFKKRRRQNYRRTHGHRQEMTVVRITSIV 102 AEVV+ R KKV+VFK +RR+NYR+ GHRQ T V+ITSI Sbjct: 61 AEVVEHGRGKKVIVFKYKRRKNYRKKQGHRQPYTKVKITSIN 102 >gnl|CDD|171362 PRK12278, PRK12278, 50S ribosomal protein L21/unknown domain fusion protein; Provisional. Length = 221 Score = 130 bits (328), Expect = 8e-32 Identities = 53/103 (51%), Positives = 79/103 (76%) Query: 1 MFAIIEHGGKQSRVSATDTITVEKIVAKDGDNIRFDNVLAVGKDEHLSVGTPRVEGAYVE 60 MFA+I+ GGKQ +V A D + VEK+ A+ G+ ++F VL +G+ ++++VG P V+GA V+ Sbjct: 1 MFAVIKTGGKQYKVQAGDLLRVEKLAAEAGETVQFGEVLMLGEGDNVTVGAPFVDGAAVQ 60 Query: 61 AEVVKQLRTKKVVVFKKRRRQNYRRTHGHRQEMTVVRITSIVT 103 AEV++Q++ KV+ FKKRRRQ+ RRT GHRQ +T+VRIT I+ Sbjct: 61 AEVIEQIKGDKVIHFKKRRRQSSRRTKGHRQLLTLVRITEILA 103 >gnl|CDD|129171 TIGR00061, L21, ribosomal protein L21. Eubacterial and chloroplast. Length = 101 Score = 98.6 bits (246), Expect = 3e-22 Identities = 50/101 (49%), Positives = 65/101 (64%) Query: 2 FAIIEHGGKQSRVSATDTITVEKIVAKDGDNIRFDNVLAVGKDEHLSVGTPRVEGAYVEA 61 +AI+E GGKQ +V T+ +EK+ A GD + FD VL V K + +G P VEGA V A Sbjct: 1 YAIVEIGGKQYKVEEGQTVRIEKLDAAPGDTVEFDKVLMVNKGGDVKIGKPYVEGAKVVA 60 Query: 62 EVVKQLRTKKVVVFKKRRRQNYRRTHGHRQEMTVVRITSIV 102 EV K R KKV V+K RRR++ R+ GHRQ T V++T IV Sbjct: 61 EVEKHGRGKKVKVYKYRRRKHSRKKQGHRQPYTKVKVTKIV 101 >gnl|CDD|147906 pfam05999, Herpes_U5, Herpesvirus U5-like family. This family of Herpesvirus includes U4, U5 and UL27. Length = 447 Score = 26.7 bits (59), Expect = 1.2 Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 1/44 (2%) Query: 44 DEHLSVGTPRVEGAYVEAEVVKQLRTKKVVVFKKRRRQNYRRTH 87 DE LS T G V A + ++ +V ++ RQ Sbjct: 397 DEELS-NTRLWNGPNVVAAAFRGVKYFEVEKDERAVRQKLGSLR 439 >gnl|CDD|165442 PHA03171, PHA03171, UL37 tegument protein; Provisional. Length = 499 Score = 26.6 bits (58), Expect = 1.5 Identities = 8/22 (36%), Positives = 13/22 (59%) Query: 67 LRTKKVVVFKKRRRQNYRRTHG 88 LR +K +++RR +R HG Sbjct: 38 LRKEKACALRQQRRHRLQRQHG 59 >gnl|CDD|177600 PHA03362, PHA03362, single-stranded binding protein UL29; Provisional. Length = 1189 Score = 25.8 bits (57), Expect = 2.4 Identities = 12/46 (26%), Positives = 25/46 (54%), Gaps = 2/46 (4%) Query: 3 AIIEHGGKQSRVSATDTITVEKIVAKDGDNIRFDNVLAVGKDEHLS 48 AI++ GG + + K++ + G ++ D+ LA+ DE+L+ Sbjct: 1046 AILDSGGAAVQTAVY--AAALKMLGERGQHMELDDWLALVDDEYLA 1089 >gnl|CDD|130475 TIGR01408, Ube1, ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions. Length = 1008 Score = 25.2 bits (55), Expect = 3.4 Identities = 12/34 (35%), Positives = 17/34 (50%) Query: 48 SVGTPRVEGAYVEAEVVKQLRTKKVVVFKKRRRQ 81 S+G G Y+ + Q++T K V FK R Q Sbjct: 230 SIGDTTELGPYLHGGIATQVKTPKTVFFKSLREQ 263 >gnl|CDD|132014 TIGR02969, mam_aldehyde_ox, aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase. Length = 1330 Score = 24.6 bits (53), Expect = 5.6 Identities = 12/32 (37%), Positives = 20/32 (62%) Query: 29 DGDNIRFDNVLAVGKDEHLSVGTPRVEGAYVE 60 D NIR D V+ VG + ++ +VEGA+++ Sbjct: 1171 DHKNIRTDIVMDVGHSINPALDIGQVEGAFIQ 1202 >gnl|CDD|184763 PRK14607, PRK14607, bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional. Length = 534 Score = 24.3 bits (53), Expect = 6.4 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 12/68 (17%) Query: 3 AIIEHGGKQSRVSATDTITVEKIVAKDGDNIRFDNVLAVGKDEHLSVGTPRVEGAYVEAE 62 I E G ++ V D IT+E+I A + +I +S G R E A + E Sbjct: 18 YIGELGPEEIEVVRNDEITIEEIEALNPSHIV------------ISPGPGRPEEAGISVE 65 Query: 63 VVKQLRTK 70 V++ K Sbjct: 66 VIRHFSGK 73 >gnl|CDD|118040 pfam09504, RE_Bsp6I, Bsp6I restriction endonuclease. This family includes the Bsp6I (recognizes and cleaves GC^NGC) restriction endonucleases. Length = 180 Score = 24.5 bits (53), Expect = 6.5 Identities = 8/39 (20%), Positives = 20/39 (51%) Query: 40 AVGKDEHLSVGTPRVEGAYVEAEVVKQLRTKKVVVFKKR 78 A G+ H+S+ VE +E +++ +R +++ + Sbjct: 142 AQGRRPHVSLQKLFVEANDIEPDIIFDIRRCRIIEDNRL 180 >gnl|CDD|185189 PRK15289, lpfA, fimbrial protein; Provisional. Length = 190 Score = 24.1 bits (52), Expect = 8.4 Identities = 11/20 (55%), Positives = 12/20 (60%) Query: 33 IRFDNVLAVGKDEHLSVGTP 52 +RFD A G D L VGTP Sbjct: 88 VRFDGTEAPGGDGDLKVGTP 107 >gnl|CDD|162841 TIGR02401, trehalose_TreY, malto-oligosyltrehalose synthase. This enzyme, formally named (1->4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis. Length = 825 Score = 23.9 bits (52), Expect = 10.0 Identities = 11/36 (30%), Positives = 16/36 (44%) Query: 52 PRVEGAYVEAEVVKQLRTKKVVVFKKRRRQNYRRTH 87 P G E EV++ + + K RQ+YR T Sbjct: 167 PLAPGTLPELEVLEDVPGDGDALKKLLERQHYRLTW 202 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.320 0.133 0.363 Gapped Lambda K H 0.267 0.0735 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 1,629,391 Number of extensions: 92280 Number of successful extensions: 197 Number of sequences better than 10.0: 1 Number of HSP's gapped: 197 Number of HSP's successfully gapped: 31 Length of query: 103 Length of database: 5,994,473 Length adjustment: 70 Effective length of query: 33 Effective length of database: 4,481,913 Effective search space: 147903129 Effective search space used: 147903129 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 50 (23.0 bits)