RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780646|ref|YP_003065059.1| 50S ribosomal protein L21 [Candidatus Liberibacter asiaticus str. psy62] (103 letters) >3i1n_R 50S ribosomal protein L21; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1vs8_R 2aw4_R 2awb_R 1vs6_R 2i2v_R 2j28_R 2i2t_R* 2qao_R* 2qba_R* 2qbc_R* 2qbe_R 2qbg_R 2qbi_R* 2qbk_R* 2qov_R 2qox_R 2qoz_R* 2qp1_R* 2rdo_R 2vhm_R ... (R:) Length = 103 Score = 119 bits (300), Expect = 1e-28 Identities = 43/101 (42%), Positives = 63/101 (62%) Query: 1 MFAIIEHGGKQSRVSATDTITVEKIVAKDGDNIRFDNVLAVGKDEHLSVGTPRVEGAYVE 60 M+A+ + GGKQ RVS T+ +EK+ G+ + F VL + E + +G P V+G ++ Sbjct: 1 MYAVFQSGGKQHRVSEGQTVRLEKLDIATGETVEFAEVLMIANGEEVKIGVPFVDGGVIK 60 Query: 61 AEVVKQLRTKKVVVFKKRRRQNYRRTHGHRQEMTVVRITSI 101 AEVV R +KV + K RRR++YR+ GHRQ T V+IT I Sbjct: 61 AEVVAHGRGEKVKIVKFRRRKHYRKQQGHRQWFTDVKITGI 101 >3bbo_T Ribosomal protein L21; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} (T:) Length = 257 Score = 117 bits (293), Expect = 7e-28 Identities = 40/102 (39%), Positives = 58/102 (56%), Gaps = 1/102 (0%) Query: 1 MFAIIEHGGKQSRVSATDTITVEKI-VAKDGDNIRFDNVLAVGKDEHLSVGTPRVEGAYV 59 +FA++ G +Q V I +++ A D I + VL VG +GTP V A V Sbjct: 124 IFAVVVIGSRQYIVIPGRWIYTQRLKGATVNDKIVLNKVLLVGTKASTYIGTPIVTNAAV 183 Query: 60 EAEVVKQLRTKKVVVFKKRRRQNYRRTHGHRQEMTVVRITSI 101 A V +QL KV+VFK ++++NYRR GHRQ +T ++IT I Sbjct: 184 HAVVEEQLLDDKVIVFKYKKKKNYRRNIGHRQPITRIKITGI 225 >2zjr_O 50S ribosomal protein L21; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} (O:) Length = 100 Score = 110 bits (276), Expect = 9e-26 Identities = 39/101 (38%), Positives = 52/101 (51%), Gaps = 3/101 (2%) Query: 1 MFAIIEHGGKQSRVSATDTITVEKIVAKDGDNIRFDNVLAVGKDEHLSVGTPRVEGAYVE 60 MFAII+ GGKQ RVS D I VE + + GD + + G +V V+ Sbjct: 1 MFAIIQTGGKQYRVSEGDVIRVESLQGEAGDKVELKALFVGG---EQTVFGEDAGKYTVQ 57 Query: 61 AEVVKQLRTKKVVVFKKRRRQNYRRTHGHRQEMTVVRITSI 101 AEVV+ R KK+ + K + YRR GHRQ T ++I I Sbjct: 58 AEVVEHGRGKKIYIRKYKSGVQYRRRTGHRQNFTAIKILGI 98 >2j01_V 50S ribosomal protein L21; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} (V:1-66,V:94-101) Length = 74 Score = 74.6 bits (184), Expect = 5e-15 Identities = 30/68 (44%), Positives = 39/68 (57%), Gaps = 2/68 (2%) Query: 1 MFAIIEHGGKQSRVSATDTITVEKIVAKDGDNIRFDNVLAVGKDEHLSVGTPRVEGAYVE 60 MFAI++ GGKQ RV + VEK+ A+ G + +L G+ VGTP VEGA V Sbjct: 1 MFAIVKTGGKQYRVEPGLKLRVEKLDAEPGATVELPVLLLGGEK--TVVGTPVVEGASVV 58 Query: 61 AEVVKQLR 68 AEV+ R Sbjct: 59 AEVLGHGR 66 >1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hammerhead structure, selenomethionine, ligase; HET: BTN; 1.80A {Escherichia coli} (A:) Length = 80 Score = 26.7 bits (59), Expect = 1.1 Identities = 11/40 (27%), Positives = 20/40 (50%) Query: 2 FAIIEHGGKQSRVSATDTITVEKIVAKDGDNIRFDNVLAV 41 I+E +++ A + TV+ I+ + G + FD L V Sbjct: 39 LCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVV 78 >1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} (A:) Length = 93 Score = 26.3 bits (58), Expect = 1.4 Identities = 3/39 (7%), Positives = 11/39 (28%) Query: 3 AIIEHGGKQSRVSATDTITVEKIVAKDGDNIRFDNVLAV 41 ++ +++ ++K+ D L Sbjct: 39 CEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVD 77 >2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens} (A:) Length = 99 Score = 26.3 bits (58), Expect = 1.5 Identities = 6/44 (13%), Positives = 17/44 (38%) Query: 2 FAIIEHGGKQSRVSATDTITVEKIVAKDGDNIRFDNVLAVGKDE 45 ++ + + + TV+K+ ++G L ++E Sbjct: 42 LMVMIAMKMEHTIKSPKDGTVKKVFYREGAQANRHTPLVEFEEE 85 >1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} (A:) Length = 80 Score = 26.3 bits (58), Expect = 1.5 Identities = 7/43 (16%), Positives = 18/43 (41%) Query: 3 AIIEHGGKQSRVSATDTITVEKIVAKDGDNIRFDNVLAVGKDE 45 +E V A V+++ GD ++ +++ + + E Sbjct: 35 ITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVE 77 >3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A (A:644-718) Length = 75 Score = 26.2 bits (58), Expect = 1.6 Identities = 5/40 (12%), Positives = 16/40 (40%) Query: 2 FAIIEHGGKQSRVSATDTITVEKIVAKDGDNIRFDNVLAV 41 ++ ++ V++ TV K+ + D+++ Sbjct: 34 LCVLSAMKMETVVTSPMEGTVRKVHVTKDMTLEGDDLILE 73 >1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} (A:) Length = 81 Score = 25.8 bits (57), Expect = 1.9 Identities = 9/39 (23%), Positives = 15/39 (38%) Query: 3 AIIEHGGKQSRVSATDTITVEKIVAKDGDNIRFDNVLAV 41 +E V A V+++ K GD I ++ V Sbjct: 36 ITLETDKATMDVPAEVAGVVKEVKVKVGDKISEGGLIVV 74 >1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin; NMR {Propionibacterium freudenreichiisubsp} (A:) Length = 77 Score = 25.8 bits (57), Expect = 1.9 Identities = 8/40 (20%), Positives = 19/40 (47%) Query: 2 FAIIEHGGKQSRVSATDTITVEKIVAKDGDNIRFDNVLAV 41 ++E ++ ++A VEK++ K+ D ++ L Sbjct: 36 VLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIK 75 >2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, domain, BCCP, X-RAY diffraction, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii OT3} PDB: 2ejf_C* 2ejg_C* 2evb_A (A:) Length = 74 Score = 25.8 bits (57), Expect = 2.0 Identities = 6/40 (15%), Positives = 18/40 (45%) Query: 2 FAIIEHGGKQSRVSATDTITVEKIVAKDGDNIRFDNVLAV 41 ++E ++ + + V++I+ K+G+ + L Sbjct: 33 LLVLEAMKMENEIPSPRDGVVKRILVKEGEAVDTGQPLIE 72 >1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} (A:) Length = 79 Score = 25.9 bits (57), Expect = 2.0 Identities = 6/39 (15%), Positives = 15/39 (38%) Query: 3 AIIEHGGKQSRVSATDTITVEKIVAKDGDNIRFDNVLAV 41 ++E V + V+ + K GD ++ + + Sbjct: 33 VVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIE 71 >2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA SAP; 2.00A {Rhizobium etli cfn 42} (A:1087-1165) Length = 79 Score = 25.8 bits (57), Expect = 2.1 Identities = 11/40 (27%), Positives = 20/40 (50%) Query: 2 FAIIEHGGKQSRVSATDTITVEKIVAKDGDNIRFDNVLAV 41 IE ++ + A T+ +++ K GD I ++LAV Sbjct: 37 LVSIEAMKMETAIHAEKDGTIAEVLVKAGDQIDAKDLLAV 76 >1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} (A:) Length = 79 Score = 25.4 bits (56), Expect = 2.4 Identities = 9/43 (20%), Positives = 15/43 (34%) Query: 3 AIIEHGGKQSRVSATDTITVEKIVAKDGDNIRFDNVLAVGKDE 45 IE V A + +IV +GD + +L + Sbjct: 36 VDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLGKLTEG 78 >2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, polymorphism, disease mutation, nucleotide-binding; HET: PG4; 1.5A {Homo sapiens} (A:) Length = 94 Score = 25.6 bits (56), Expect = 2.5 Identities = 10/40 (25%), Positives = 20/40 (50%) Query: 2 FAIIEHGGKQSRVSATDTITVEKIVAKDGDNIRFDNVLAV 41 +IE Q+ ++A T TV+ + + GD + ++L Sbjct: 53 ICVIEAMKMQNSMTAGKTGTVKSVHCQAGDTVGEGDLLVE 92 >3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 3hb9_A* (A:1069-1150) Length = 82 Score = 25.1 bits (55), Expect = 3.5 Identities = 7/44 (15%), Positives = 18/44 (40%) Query: 2 FAIIEHGGKQSRVSATDTITVEKIVAKDGDNIRFDNVLAVGKDE 45 I E ++ + A ++++ +GD I ++L + Sbjct: 37 LLITEAMKMETTIQAPFDGVIKQVTVNNGDTIATGDLLIEIEKA 80 >2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli} (A:) Length = 85 Score = 24.7 bits (54), Expect = 3.9 Identities = 6/39 (15%), Positives = 16/39 (41%) Query: 3 AIIEHGGKQSRVSATDTITVEKIVAKDGDNIRFDNVLAV 41 +E V A V+++ GD ++ +++ + Sbjct: 31 ITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMI 69 >1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} (A:) Length = 80 Score = 24.7 bits (54), Expect = 4.8 Identities = 6/43 (13%), Positives = 16/43 (37%) Query: 3 AIIEHGGKQSRVSATDTITVEKIVAKDGDNIRFDNVLAVGKDE 45 IE V A+ ++ ++ +G + +L ++ Sbjct: 37 VEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRLREG 79 >1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A* (A:) Length = 72 Score = 24.6 bits (54), Expect = 5.1 Identities = 10/44 (22%), Positives = 21/44 (47%) Query: 2 FAIIEHGGKQSRVSATDTITVEKIVAKDGDNIRFDNVLAVGKDE 45 AI+E + + A + V+++ K+GD + +VL + Sbjct: 27 VAILESMKMEIPIVADRSGIVKEVKKKEGDFVNEGDVLLELSNS 70 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.320 0.133 0.363 Gapped Lambda K H 0.267 0.0649 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 763,361 Number of extensions: 31007 Number of successful extensions: 128 Number of sequences better than 10.0: 1 Number of HSP's gapped: 125 Number of HSP's successfully gapped: 29 Length of query: 103 Length of database: 4,956,049 Length adjustment: 61 Effective length of query: 42 Effective length of database: 2,893,944 Effective search space: 121545648 Effective search space used: 121545648 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 50 (23.2 bits)