RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780646|ref|YP_003065059.1| 50S ribosomal protein L21
[Candidatus Liberibacter asiaticus str. psy62]
(103 letters)
>d2qamr1 b.155.1.1 (R:1-103) Ribosomal protein L21p {Escherichia
coli [TaxId: 562]}
Length = 103
Score = 112 bits (281), Expect = 1e-26
Identities = 43/101 (42%), Positives = 63/101 (62%)
Query: 1 MFAIIEHGGKQSRVSATDTITVEKIVAKDGDNIRFDNVLAVGKDEHLSVGTPRVEGAYVE 60
M+A+ + GGKQ RVS T+ +EK+ G+ + F VL + E + +G P V+G ++
Sbjct: 1 MYAVFQSGGKQHRVSEGQTVRLEKLDIATGETVEFAEVLMIANGEEVKIGVPFVDGGVIK 60
Query: 61 AEVVKQLRTKKVVVFKKRRRQNYRRTHGHRQEMTVVRITSI 101
AEVV R +KV + K RRR++YR+ GHRQ T V+IT I
Sbjct: 61 AEVVAHGRGEKVKIVKFRRRKHYRKQQGHRQWFTDVKITGI 101
>d2j01v1 b.155.1.1 (V:1-101) Ribosomal protein L21p {Thermus
thermophilus [TaxId: 274]}
Length = 101
Score = 104 bits (262), Expect = 2e-24
Identities = 45/101 (44%), Positives = 58/101 (57%), Gaps = 2/101 (1%)
Query: 1 MFAIIEHGGKQSRVSATDTITVEKIVAKDGDNIRFDNVLAVGKDEHLSVGTPRVEGAYVE 60
MFAI++ GGKQ RV + VEK+ A+ G + +L G E VGTP VEGA V
Sbjct: 1 MFAIVKTGGKQYRVEPGLKLRVEKLDAEPGATVELPVLLLGG--EKTVVGTPVVEGASVV 58
Query: 61 AEVVKQLRTKKVVVFKKRRRQNYRRTHGHRQEMTVVRITSI 101
AEV+ R KK++V K + + YRR GHRQ T + I I
Sbjct: 59 AEVLGHGRGKKILVSKFKAKVQYRRKKGHRQPYTELLIKEI 99
>d2zjro1 b.155.1.1 (O:5-98) Ribosomal protein L21p {Deinococcus
radiodurans [TaxId: 1299]}
Length = 94
Score = 91.0 bits (226), Expect = 2e-20
Identities = 34/97 (35%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
Query: 5 IEHGGKQSRVSATDTITVEKIVAKDGDNIRFDNVLAVGKDEHLSVGTPRVEGAYVEAEVV 64
I+ GGKQ RVS D I VE + + GD + + G+ V+AEVV
Sbjct: 1 IQTGGKQYRVSEGDVIRVESLQGEAGDKVELKALFVGGEQTV---FGEDAGKYTVQAEVV 57
Query: 65 KQLRTKKVVVFKKRRRQNYRRTHGHRQEMTVVRITSI 101
+ R KK+ + K + YRR GHRQ T ++I I
Sbjct: 58 EHGRGKKIYIRKYKSGVQYRRRTGHRQNFTAIKILGI 94
>d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase
{Escherichia coli [TaxId: 562]}
Length = 80
Score = 31.5 bits (71), Expect = 0.022
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 1 MFAIIEHGGKQSRVSATDTITVEKIVAKDGDNIRFDNVLAV 41
I+E +++ A + TV+ I+ + G + FD L V
Sbjct: 38 TLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVV 78
>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide
acetyltransferase {Bacillus stearothermophilus [TaxId:
1422]}
Length = 80
Score = 26.6 bits (59), Expect = 0.54
Identities = 4/41 (9%), Positives = 13/41 (31%)
Query: 1 MFAIIEHGGKQSRVSATDTITVEKIVAKDGDNIRFDNVLAV 41
+ +++ + + V +I+ +G L
Sbjct: 34 VLCEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLIT 74
>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide
acetyltransferase {Escherichia coli [TaxId: 562]}
Length = 80
Score = 25.9 bits (57), Expect = 0.82
Identities = 6/39 (15%), Positives = 16/39 (41%)
Query: 3 AIIEHGGKQSRVSATDTITVEKIVAKDGDNIRFDNVLAV 41
+E V A V+++ GD ++ +++ +
Sbjct: 35 ITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMI 73
>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate
dehydrogenase complex {Escherichia coli [TaxId: 562]}
Length = 80
Score = 25.5 bits (56), Expect = 1.2
Identities = 6/41 (14%), Positives = 15/41 (36%)
Query: 1 MFAIIEHGGKQSRVSATDTITVEKIVAKDGDNIRFDNVLAV 41
+ IE V A+ ++ ++ +G + +L
Sbjct: 35 VLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGR 75
>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial
branched-chain alpha-ketoacid dehydrogenase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 25.5 bits (56), Expect = 1.3
Identities = 3/41 (7%), Positives = 11/41 (26%)
Query: 1 MFAIIEHGGKQSRVSATDTITVEKIVAKDGDNIRFDNVLAV 41
++ +++ ++K+ D L
Sbjct: 37 SICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVD 77
>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate
dehydrogenase complex {Azotobacter vinelandii [TaxId:
354]}
Length = 79
Score = 24.4 bits (53), Expect = 2.8
Identities = 9/41 (21%), Positives = 15/41 (36%)
Query: 1 MFAIIEHGGKQSRVSATDTITVEKIVAKDGDNIRFDNVLAV 41
+ IE V A + +IV +GD + +L
Sbjct: 34 LIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLGK 74
>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide
acetyltransferase {Neisseria meningitidis [TaxId: 487]}
Length = 81
Score = 24.0 bits (52), Expect = 4.1
Identities = 9/39 (23%), Positives = 15/39 (38%)
Query: 3 AIIEHGGKQSRVSATDTITVEKIVAKDGDNIRFDNVLAV 41
+E V A V+++ K GD I ++ V
Sbjct: 36 ITLETDKATMDVPAEVAGVVKEVKVKVGDKISEGGLIVV 74
>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of
transcarboxylase (TC 1.3S) {Propionibacterium
freudenreichii, subsp. shermanii [TaxId: 1744]}
Length = 77
Score = 23.7 bits (51), Expect = 4.5
Identities = 8/39 (20%), Positives = 19/39 (48%)
Query: 3 AIIEHGGKQSRVSATDTITVEKIVAKDGDNIRFDNVLAV 41
++E ++ ++A VEK++ K+ D ++ L
Sbjct: 37 LVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIK 75
>d2qkwa1 a.8.8.1 (A:29-129) Avirulence protein AvrPto {Pseudomonas
syringae [TaxId: 317]}
Length = 101
Score = 23.6 bits (50), Expect = 5.1
Identities = 12/50 (24%), Positives = 24/50 (48%)
Query: 31 DNIRFDNVLAVGKDEHLSVGTPRVEGAYVEAEVVKQLRTKKVVVFKKRRR 80
DN+ +L+V S G PR + +V ++ + LR + ++ +R
Sbjct: 1 DNVTSSQLLSVRHQLAESAGLPRDQHEFVSSQAPQSLRNRYNNLYSHTQR 50
>d1j1ta_ b.29.1.18 (A:) Alginate lyase {Alteromonas sp. [TaxId:
232]}
Length = 228
Score = 22.4 bits (47), Expect = 9.9
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 16/67 (23%)
Query: 8 GGKQ--SRVSATDTITVEKIVAKDGDNIRFDNVLA--------------VGKDEHLSVGT 51
GGK S+ A+DT T+ K+ D D F++ +A G +E ++GT
Sbjct: 78 GGKTIISQHHASDTGTISKVYVSDTDESGFNDSVANNGIFDVYVRLRNTSGNEEKFALGT 137
Query: 52 PRVEGAY 58
+
Sbjct: 138 MTSGETF 144
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.133 0.363
Gapped
Lambda K H
0.267 0.0639 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 367,798
Number of extensions: 15263
Number of successful extensions: 47
Number of sequences better than 10.0: 1
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 22
Length of query: 103
Length of database: 2,407,596
Length adjustment: 64
Effective length of query: 39
Effective length of database: 1,528,876
Effective search space: 59626164
Effective search space used: 59626164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.1 bits)